Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5208 and GFF5209 overlap by 4 nucleotides GFF5209 and GFF5210 are separated by 80 nucleotides GFF5210 and GFF5211 overlap by 4 nucleotides
GFF5208 - Efflux ABC transporter, permease/ATP-binding protein Reut_A2584, at 69,740 to 71,761
GFF5208
GFF5209 - DUF1854 domain-containing protein, at 71,758 to 72,240
GFF5209
GFF5210 - hypothetical protein, at 72,321 to 73,031
GFF5210
GFF5211 - Alkaline phosphatase (EC 3.1.3.1), at 73,028 to 74,566
GFF5211
Position (kb) 71
72
73 Strain fitness (log2 ratio) -1
0
1 at 70.787 kb on + strand, within GFF5208 at 70.787 kb on + strand, within GFF5208 at 70.788 kb on - strand, within GFF5208 at 70.788 kb on - strand, within GFF5208 at 70.788 kb on - strand, within GFF5208 at 70.788 kb on - strand, within GFF5208 at 70.802 kb on + strand, within GFF5208 at 70.803 kb on - strand, within GFF5208 at 70.803 kb on - strand, within GFF5208 at 71.097 kb on - strand, within GFF5208 at 71.325 kb on - strand, within GFF5208 at 71.630 kb on + strand at 71.630 kb on + strand at 71.643 kb on - strand at 71.643 kb on - strand at 71.643 kb on - strand at 71.849 kb on + strand, within GFF5209 at 71.849 kb on + strand, within GFF5209 at 71.849 kb on + strand, within GFF5209 at 71.849 kb on + strand, within GFF5209 at 71.849 kb on + strand, within GFF5209 at 71.849 kb on + strand, within GFF5209 at 71.850 kb on - strand, within GFF5209 at 71.850 kb on - strand, within GFF5209 at 71.850 kb on - strand, within GFF5209 at 72.341 kb on - strand at 72.356 kb on - strand at 72.356 kb on - strand at 72.463 kb on + strand, within GFF5210 at 72.520 kb on + strand, within GFF5210
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL remove 70,787 + GFF5208 0.52 -0.8 70,787 + GFF5208 0.52 -0.8 70,788 - GFF5208 0.52 +0.2 70,788 - GFF5208 0.52 +0.5 70,788 - GFF5208 0.52 -0.2 70,788 - GFF5208 0.52 +0.0 70,802 + GFF5208 0.53 +0.5 70,803 - GFF5208 0.53 -0.7 70,803 - GFF5208 0.53 +0.7 71,097 - GFF5208 0.67 +0.3 71,325 - GFF5208 0.78 +0.5 71,630 + -0.1 71,630 + +0.5 71,643 - -0.7 71,643 - +1.5 71,643 - +0.5 71,849 + GFF5209 0.19 +0.2 71,849 + GFF5209 0.19 -1.6 71,849 + GFF5209 0.19 +1.6 71,849 + GFF5209 0.19 +0.2 71,849 + GFF5209 0.19 +0.7 71,849 + GFF5209 0.19 -0.5 71,850 - GFF5209 0.19 +0.0 71,850 - GFF5209 0.19 +0.0 71,850 - GFF5209 0.19 +1.5 72,341 - +0.0 72,356 - -0.3 72,356 - +0.4 72,463 + GFF5210 0.20 -0.6 72,520 + GFF5210 0.28 -0.0
Or see this region's nucleotide sequence