Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4933 and GFF4934 overlap by 8 nucleotides GFF4934 and GFF4935 overlap by 4 nucleotides GFF4935 and GFF4936 are separated by 10 nucleotides
GFF4933 - Dipeptide transport ATP-binding protein DppD (TC 3.A.1.5.2), at 26,717 to 27,565
GFF4933
GFF4934 - ABC transporter, permease protein 2 (cluster 5, nickel/peptides/opines), at 27,558 to 28,454
GFF4934
GFF4935 - ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines), at 28,451 to 29,473
GFF4935
GFF4936 - ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines), at 29,484 to 31,058
GFF4936
Position (kb) 28
29
30 Strain fitness (log2 ratio) -2
-1
0
1
2 at 27.528 kb on + strand at 27.579 kb on + strand at 27.579 kb on + strand at 27.579 kb on + strand at 27.580 kb on - strand at 27.580 kb on - strand at 27.580 kb on - strand at 27.676 kb on + strand, within GFF4934 at 27.676 kb on + strand, within GFF4934 at 27.676 kb on + strand, within GFF4934 at 27.676 kb on + strand, within GFF4934 at 27.676 kb on + strand, within GFF4934 at 27.676 kb on + strand, within GFF4934 at 27.676 kb on + strand, within GFF4934 at 27.676 kb on + strand, within GFF4934 at 27.676 kb on + strand, within GFF4934 at 27.676 kb on + strand, within GFF4934 at 27.677 kb on - strand, within GFF4934 at 27.677 kb on - strand, within GFF4934 at 27.677 kb on - strand, within GFF4934 at 28.084 kb on + strand, within GFF4934 at 28.085 kb on - strand, within GFF4934 at 28.171 kb on + strand, within GFF4934 at 28.172 kb on - strand, within GFF4934 at 28.587 kb on + strand, within GFF4935 at 28.588 kb on - strand, within GFF4935 at 28.588 kb on - strand, within GFF4935 at 28.588 kb on - strand, within GFF4935 at 28.588 kb on - strand, within GFF4935 at 28.588 kb on - strand, within GFF4935 at 28.588 kb on - strand, within GFF4935 at 28.588 kb on - strand, within GFF4935 at 28.588 kb on - strand, within GFF4935 at 28.588 kb on - strand, within GFF4935 at 28.653 kb on + strand, within GFF4935 at 28.653 kb on + strand, within GFF4935 at 28.653 kb on + strand, within GFF4935 at 28.654 kb on - strand, within GFF4935 at 28.758 kb on + strand, within GFF4935 at 28.758 kb on + strand, within GFF4935 at 28.758 kb on + strand, within GFF4935 at 28.759 kb on - strand, within GFF4935 at 28.759 kb on - strand, within GFF4935 at 28.759 kb on - strand, within GFF4935 at 28.759 kb on - strand, within GFF4935 at 28.759 kb on - strand, within GFF4935 at 28.759 kb on - strand, within GFF4935 at 28.759 kb on - strand, within GFF4935 at 28.759 kb on - strand, within GFF4935 at 28.759 kb on - strand, within GFF4935 at 28.809 kb on + strand, within GFF4935 at 28.809 kb on + strand, within GFF4935 at 28.809 kb on + strand, within GFF4935 at 28.809 kb on + strand, within GFF4935 at 28.809 kb on + strand, within GFF4935 at 28.810 kb on - strand, within GFF4935 at 28.810 kb on - strand, within GFF4935 at 28.810 kb on - strand, within GFF4935 at 28.810 kb on - strand, within GFF4935 at 28.825 kb on - strand, within GFF4935 at 28.825 kb on - strand, within GFF4935 at 28.825 kb on - strand, within GFF4935 at 28.825 kb on - strand, within GFF4935 at 28.825 kb on - strand, within GFF4935 at 28.938 kb on + strand, within GFF4935 at 28.938 kb on + strand, within GFF4935 at 28.944 kb on + strand, within GFF4935 at 28.944 kb on + strand, within GFF4935 at 28.944 kb on + strand, within GFF4935 at 28.944 kb on + strand, within GFF4935 at 28.944 kb on + strand, within GFF4935 at 28.944 kb on + strand, within GFF4935 at 28.944 kb on + strand, within GFF4935 at 28.944 kb on + strand, within GFF4935 at 28.945 kb on - strand, within GFF4935 at 28.945 kb on - strand, within GFF4935 at 28.945 kb on - strand, within GFF4935 at 28.945 kb on - strand, within GFF4935 at 28.945 kb on - strand, within GFF4935 at 28.945 kb on - strand, within GFF4935 at 28.992 kb on + strand, within GFF4935 at 28.993 kb on - strand, within GFF4935 at 28.993 kb on - strand, within GFF4935 at 28.993 kb on - strand, within GFF4935 at 28.993 kb on - strand, within GFF4935 at 28.993 kb on - strand, within GFF4935 at 29.041 kb on - strand, within GFF4935 at 29.178 kb on + strand, within GFF4935 at 29.256 kb on + strand, within GFF4935 at 29.257 kb on - strand, within GFF4935 at 29.316 kb on + strand, within GFF4935 at 29.486 kb on - strand at 29.504 kb on - strand at 29.504 kb on - strand at 29.536 kb on + strand at 29.536 kb on + strand at 29.536 kb on + strand at 29.537 kb on - strand at 29.537 kb on - strand at 29.537 kb on - strand at 29.632 kb on + strand at 29.633 kb on - strand at 29.737 kb on + strand, within GFF4936 at 29.764 kb on + strand, within GFF4936 at 29.764 kb on + strand, within GFF4936 at 29.764 kb on + strand, within GFF4936 at 29.815 kb on + strand, within GFF4936 at 29.815 kb on + strand, within GFF4936 at 29.816 kb on - strand, within GFF4936 at 29.816 kb on - strand, within GFF4936 at 29.816 kb on - strand, within GFF4936 at 30.037 kb on + strand, within GFF4936 at 30.038 kb on - strand, within GFF4936 at 30.038 kb on - strand, within GFF4936 at 30.038 kb on - strand, within GFF4936 at 30.038 kb on - strand, within GFF4936 at 30.038 kb on - strand, within GFF4936 at 30.133 kb on + strand, within GFF4936 at 30.133 kb on + strand, within GFF4936 at 30.134 kb on - strand, within GFF4936 at 30.134 kb on - strand, within GFF4936 at 30.145 kb on + strand, within GFF4936 at 30.433 kb on + strand, within GFF4936 at 30.433 kb on + strand, within GFF4936 at 30.433 kb on + strand, within GFF4936 at 30.434 kb on - strand, within GFF4936 at 30.434 kb on - strand, within GFF4936 at 30.434 kb on - strand, within GFF4936 at 30.434 kb on - strand, within GFF4936 at 30.434 kb on - strand, within GFF4936 at 30.434 kb on - strand, within GFF4936 at 30.449 kb on - strand, within GFF4936
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL remove 27,528 + +0.3 27,579 + -0.1 27,579 + -0.2 27,579 + -0.7 27,580 - -0.7 27,580 - +0.8 27,580 - +1.4 27,676 + GFF4934 0.13 -1.2 27,676 + GFF4934 0.13 +0.8 27,676 + GFF4934 0.13 -1.0 27,676 + GFF4934 0.13 -1.0 27,676 + GFF4934 0.13 +0.2 27,676 + GFF4934 0.13 -0.2 27,676 + GFF4934 0.13 +0.3 27,676 + GFF4934 0.13 +1.8 27,676 + GFF4934 0.13 +0.1 27,676 + GFF4934 0.13 -0.1 27,677 - GFF4934 0.13 +0.3 27,677 - GFF4934 0.13 -0.2 27,677 - GFF4934 0.13 -1.0 28,084 + GFF4934 0.59 +0.0 28,085 - GFF4934 0.59 +0.2 28,171 + GFF4934 0.68 -0.1 28,172 - GFF4934 0.68 -0.2 28,587 + GFF4935 0.13 -1.0 28,588 - GFF4935 0.13 -0.2 28,588 - GFF4935 0.13 +0.5 28,588 - GFF4935 0.13 +0.5 28,588 - GFF4935 0.13 -0.2 28,588 - GFF4935 0.13 -0.4 28,588 - GFF4935 0.13 +0.3 28,588 - GFF4935 0.13 +0.6 28,588 - GFF4935 0.13 +0.3 28,588 - GFF4935 0.13 +0.2 28,653 + GFF4935 0.20 -0.4 28,653 + GFF4935 0.20 +0.4 28,653 + GFF4935 0.20 -1.0 28,654 - GFF4935 0.20 -0.3 28,758 + GFF4935 0.30 -1.1 28,758 + GFF4935 0.30 -0.4 28,758 + GFF4935 0.30 -0.2 28,759 - GFF4935 0.30 +0.0 28,759 - GFF4935 0.30 -0.1 28,759 - GFF4935 0.30 +0.3 28,759 - GFF4935 0.30 +0.1 28,759 - GFF4935 0.30 -0.6 28,759 - GFF4935 0.30 +1.5 28,759 - GFF4935 0.30 +0.6 28,759 - GFF4935 0.30 -0.1 28,759 - GFF4935 0.30 -0.5 28,809 + GFF4935 0.35 -0.4 28,809 + GFF4935 0.35 +0.3 28,809 + GFF4935 0.35 +0.6 28,809 + GFF4935 0.35 -0.8 28,809 + GFF4935 0.35 -1.0 28,810 - GFF4935 0.35 +0.4 28,810 - GFF4935 0.35 +0.4 28,810 - GFF4935 0.35 +0.1 28,810 - GFF4935 0.35 +1.4 28,825 - GFF4935 0.37 -1.3 28,825 - GFF4935 0.37 -0.4 28,825 - GFF4935 0.37 +0.9 28,825 - GFF4935 0.37 -0.1 28,825 - GFF4935 0.37 +0.1 28,938 + GFF4935 0.48 -0.2 28,938 + GFF4935 0.48 -0.5 28,944 + GFF4935 0.48 -0.6 28,944 + GFF4935 0.48 -0.1 28,944 + GFF4935 0.48 -1.2 28,944 + GFF4935 0.48 -0.2 28,944 + GFF4935 0.48 +0.4 28,944 + GFF4935 0.48 -0.5 28,944 + GFF4935 0.48 +0.0 28,944 + GFF4935 0.48 +0.2 28,945 - GFF4935 0.48 -1.6 28,945 - GFF4935 0.48 +1.8 28,945 - GFF4935 0.48 +1.0 28,945 - GFF4935 0.48 +0.7 28,945 - GFF4935 0.48 -0.6 28,945 - GFF4935 0.48 +0.4 28,992 + GFF4935 0.53 -0.0 28,993 - GFF4935 0.53 -1.3 28,993 - GFF4935 0.53 -0.6 28,993 - GFF4935 0.53 -0.0 28,993 - GFF4935 0.53 -0.0 28,993 - GFF4935 0.53 +0.6 29,041 - GFF4935 0.58 -0.6 29,178 + GFF4935 0.71 +0.2 29,256 + GFF4935 0.79 -0.2 29,257 - GFF4935 0.79 -1.0 29,316 + GFF4935 0.85 +0.4 29,486 - -0.6 29,504 - -1.7 29,504 - +0.8 29,536 + -0.2 29,536 + -0.2 29,536 + +0.8 29,537 - +1.2 29,537 - -0.0 29,537 - -0.2 29,632 + -1.5 29,633 - +0.4 29,737 + GFF4936 0.16 -0.1 29,764 + GFF4936 0.18 +0.5 29,764 + GFF4936 0.18 +0.4 29,764 + GFF4936 0.18 +0.4 29,815 + GFF4936 0.21 -1.0 29,815 + GFF4936 0.21 -0.6 29,816 - GFF4936 0.21 -1.2 29,816 - GFF4936 0.21 -1.7 29,816 - GFF4936 0.21 -1.6 30,037 + GFF4936 0.35 -0.8 30,038 - GFF4936 0.35 -0.2 30,038 - GFF4936 0.35 +1.6 30,038 - GFF4936 0.35 -0.0 30,038 - GFF4936 0.35 -1.0 30,038 - GFF4936 0.35 -0.3 30,133 + GFF4936 0.41 -1.0 30,133 + GFF4936 0.41 -0.4 30,134 - GFF4936 0.41 -0.3 30,134 - GFF4936 0.41 +0.8 30,145 + GFF4936 0.42 -1.2 30,433 + GFF4936 0.60 +1.0 30,433 + GFF4936 0.60 -2.0 30,433 + GFF4936 0.60 +0.6 30,434 - GFF4936 0.60 +0.3 30,434 - GFF4936 0.60 +1.0 30,434 - GFF4936 0.60 -1.4 30,434 - GFF4936 0.60 +0.3 30,434 - GFF4936 0.60 +0.8 30,434 - GFF4936 0.60 -0.3 30,449 - GFF4936 0.61 +1.5
Or see this region's nucleotide sequence