Strain Fitness in Variovorax sp. SCN45 around GFF4705

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
68,231	+		GFF4704	0.21	-0.7
68,231	+		GFF4704	0.21	+1.7
68,231	+		GFF4704	0.21	-0.9
68,231	+		GFF4704	0.21	+1.2
68,231	+		GFF4704	0.21	+0.8
68,342	+		GFF4704	0.34	-0.5
68,550	-		GFF4704	0.59	+0.3
68,615	+		GFF4704	0.67	-0.0
68,615	+		GFF4704	0.67	-1.2
68,615	+		GFF4704	0.67	-1.3
68,615	+		GFF4704	0.67	+0.3
68,615	+		GFF4704	0.67	-0.9
68,615	+		GFF4704	0.67	-0.4
68,615	+		GFF4704	0.67	+0.3
68,616	-		GFF4704	0.67	-1.2
68,616	-		GFF4704	0.67	-1.1
68,616	-		GFF4704	0.67	-0.9
68,616	-		GFF4704	0.67	-1.0
68,616	-		GFF4704	0.67	+1.1
68,617	+		GFF4704	0.68	-0.9
69,052	+		GFF4705	0.13	+0.9
69,053	-		GFF4705	0.13	+0.7
69,053	-		GFF4705	0.13	+0.2
69,053	-		GFF4705	0.13	-0.6
69,053	-		GFF4705	0.13	-0.1
69,053	-		GFF4705	0.13	-0.3
69,053	-		GFF4705	0.13	-1.5
69,130	+		GFF4705	0.19	+0.0
69,158	-		GFF4705	0.21	-0.7
69,307	+		GFF4705	0.32	-2.1
69,308	-		GFF4705	0.32	+0.3
69,403	+		GFF4705	0.39	+0.7
69,403	+		GFF4705	0.39	-0.5
69,404	-		GFF4705	0.39	+0.1
69,493	+		GFF4705	0.46	-0.3
69,530	-		GFF4705	0.49	+0.7
69,530	-		GFF4705	0.49	-0.7
69,530	-		GFF4705	0.49	-0.1
69,532	+		GFF4705	0.49	+0.1
69,532	+		GFF4705	0.49	+0.3
69,532	+		GFF4705	0.49	+1.0
69,533	-		GFF4705	0.49	-0.1
69,533	-		GFF4705	0.49	-0.1
69,533	-		GFF4705	0.49	-0.3
69,547	+		GFF4705	0.50	-0.5
69,547	+		GFF4705	0.50	-0.2
69,547	+		GFF4705	0.50	-3.3
69,548	-		GFF4705	0.50	-0.8
69,548	-		GFF4705	0.50	+1.1
69,548	-		GFF4705	0.50	+0.1
69,548	-		GFF4705	0.50	-0.3
69,548	-		GFF4705	0.50	+0.3
69,548	-		GFF4705	0.50	-0.4
69,548	-		GFF4705	0.50	-0.8
69,682	+		GFF4705	0.60	-0.3
69,682	+		GFF4705	0.60	-0.0
69,683	-		GFF4705	0.60	-0.2
69,683	-		GFF4705	0.60	-0.7
69,683	-		GFF4705	0.60	-0.6
69,691	+		GFF4705	0.61	+1.6
69,691	+		GFF4705	0.61	+0.5
69,691	+		GFF4705	0.61	+1.7
69,691	+		GFF4705	0.61	+0.5
69,691	+		GFF4705	0.61	-0.2
69,691	+		GFF4705	0.61	+2.1
69,691	+		GFF4705	0.61	-0.9
69,692	-		GFF4705	0.61	-0.4
69,692	-		GFF4705	0.61	-0.2
69,692	-		GFF4705	0.61	-0.3
69,692	-		GFF4705	0.61	-0.1
69,692	-		GFF4705	0.61	-0.9
69,692	-		GFF4705	0.61	+0.6
69,692	-		GFF4705	0.61	-1.3
69,692	-		GFF4705	0.61	+0.4
69,692	-		GFF4705	0.61	-2.0
69,820	+		GFF4705	0.70	-0.4
69,821	-		GFF4705	0.71	-0.3
69,821	-		GFF4705	0.71	+0.9
69,821	-		GFF4705	0.71	-0.3
69,847	+		GFF4705	0.72	+0.6
69,847	+		GFF4705	0.72	-1.3
69,847	+		GFF4705	0.72	-0.2
69,847	+		GFF4705	0.72	-0.0
69,859	+		GFF4705	0.73	-1.7
69,913	+		GFF4705	0.77	-0.2
69,913	+		GFF4705	0.77	-0.5
69,913	+		GFF4705	0.77	-0.0
69,914	-		GFF4705	0.78	-1.3
69,914	-		GFF4705	0.78	+0.3
70,025	-		GFF4705	0.86	+1.3
70,141	+				-0.0
70,141	+				+0.2
70,141	+				+0.1
70,141	+				+0.6
70,142	-				+1.3
70,142	-				-0.0
70,144	+				+1.0
70,144	+				-0.3
70,144	+				-0.3
70,144	+				-0.6
70,145	-				-0.7
70,145	-				-0.6
70,145	-				-1.2
70,145	-				+1.3
70,145	-				+0.6
70,145	-				+0.0
70,145	-				-0.3
70,145	-				+0.7
70,145	-				+0.2
70,163	-				+0.1
70,263	+				-0.3
70,263	+				-0.5
70,263	+				-0.0
70,264	-				-0.2
70,264	-				-1.3
70,264	-				-0.0
70,264	-				-0.7
70,264	-				-0.1
70,868	+		GFF4706	0.69	-1.9
70,868	+		GFF4706	0.69	-1.2
70,868	+		GFF4706	0.69	+2.1
70,868	+		GFF4706	0.69	+0.7
70,868	+		GFF4706	0.69	-0.3
70,869	-		GFF4706	0.69	+0.5
70,869	-		GFF4706	0.69	-0.5
70,869	-		GFF4706	0.69	+0.5
70,962	-		GFF4706	0.80	-0.3