Strain Fitness in Variovorax sp. SCN45 around GFF4494

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
137,803	-				-0.4
137,803	-				-1.2
138,672	-				-0.3
138,672	-				+3.7
138,810	+		GFF4494	0.21	-2.0
138,810	+		GFF4494	0.21	+0.1
138,810	+		GFF4494	0.21	-0.1
138,810	+		GFF4494	0.21	-0.7
138,810	+		GFF4494	0.21	-0.3
138,810	+		GFF4494	0.21	+0.7
138,810	+		GFF4494	0.21	-1.5
138,810	+		GFF4494	0.21	-0.7
138,810	+		GFF4494	0.21	-0.3
138,810	+		GFF4494	0.21	-0.3
138,811	-		GFF4494	0.22	+0.6
138,811	-		GFF4494	0.22	+0.8
138,811	-		GFF4494	0.22	-0.4
138,811	-		GFF4494	0.22	-0.3
138,966	+		GFF4494	0.71	+0.0
138,966	+		GFF4494	0.71	+1.3
138,966	+		GFF4494	0.71	+1.7
138,966	+		GFF4494	0.71	+0.3
138,967	-		GFF4494	0.71	+0.2
138,967	-		GFF4494	0.71	-0.2
138,967	-		GFF4494	0.71	+0.5
138,967	-		GFF4494	0.71	+2.0
139,151	+				-0.2
139,151	+				-1.2
139,151	+				-0.5
139,152	-				+0.9
139,152	-				-0.1
139,403	+		GFF4495	0.40	+1.1
139,403	+		GFF4495	0.40	-0.6
139,404	-		GFF4495	0.40	+0.1
139,404	-		GFF4495	0.40	-0.2
139,583	+		GFF4495	0.62	+1.0
139,583	+		GFF4495	0.62	-1.4
139,584	-		GFF4495	0.62	-0.5
139,584	-		GFF4495	0.62	+0.2
139,584	-		GFF4495	0.62	+0.2
139,584	-		GFF4495	0.62	-0.7
139,685	+		GFF4495	0.75	+0.1
139,685	+		GFF4495	0.75	-0.3
139,685	+		GFF4495	0.75	-0.3
139,685	+		GFF4495	0.75	-1.7
139,685	+		GFF4495	0.75	-0.0
139,686	-		GFF4495	0.75	+0.6
139,686	-		GFF4495	0.75	+0.7
139,686	-		GFF4495	0.75	-0.3
139,691	+		GFF4495	0.75	+0.2
139,691	+		GFF4495	0.75	-0.0
139,691	+		GFF4495	0.75	+0.3
139,691	+		GFF4495	0.75	+0.7
139,691	+		GFF4495	0.75	+1.7
139,692	-		GFF4495	0.75	+0.7
139,692	-		GFF4495	0.75	-0.7
139,853	+				+0.7
139,853	+				-0.0
139,853	+				-0.3
139,853	+				+0.2
139,853	+				+0.5
139,853	+				-0.5
139,854	-				+0.5
139,854	-				+0.2
139,854	-				+0.7
139,854	-				-0.8
139,854	-				-1.3
139,854	-				+0.2
139,856	+				+0.2
139,856	+				-0.5
139,856	+				+0.4
139,856	+				-0.1
139,856	+				+0.4
139,857	-				-0.2
139,857	-				-3.1
139,857	-				-0.1
139,857	-				-0.4