Strain Fitness in Variovorax sp. SCN45 around GFF4491

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4490 and GFF4491 overlap by 26 nucleotidesGFF4491 and GFF4492 overlap by 4 nucleotidesGFF4492 and GFF4493 overlap by 4 nucleotides GFF4490 - Site-specific tyrosine recombinase XerC, at 135,454 to 136,470 GFF4490 GFF4491 - no description, at 136,445 to 137,080 GFF4491 GFF4492 - Protein of unknown function DUF484, at 137,077 to 137,781 GFF4492 GFF4493 - Diaminopimelate epimerase (EC 5.1.1.7), at 137,778 to 138,662 GFF4493 Position (kb) 136 137 138Strain fitness (log2 ratio) -2 -1 0 1 2at 135.451 kb on + strandat 135.451 kb on + strandat 135.451 kb on + strandat 135.451 kb on + strandat 135.451 kb on + strandat 135.451 kb on + strandat 135.451 kb on + strandat 135.451 kb on + strandat 135.451 kb on + strandat 135.451 kb on + strandat 135.451 kb on + strandat 135.452 kb on - strandat 135.452 kb on - strandat 135.452 kb on - strandat 135.452 kb on - strandat 135.455 kb on + strandat 135.455 kb on + strandat 135.456 kb on - strandat 135.456 kb on - strandat 135.456 kb on - strandat 135.456 kb on - strandat 135.456 kb on - strandat 135.456 kb on - strandat 135.456 kb on - strandat 135.461 kb on + strandat 135.503 kb on + strandat 135.503 kb on + strandat 135.503 kb on + strandat 135.503 kb on + strandat 135.503 kb on + strandat 135.503 kb on + strandat 135.503 kb on + strandat 135.503 kb on + strandat 135.504 kb on - strandat 135.504 kb on - strandat 135.504 kb on - strandat 135.504 kb on - strandat 135.504 kb on - strandat 135.504 kb on - strandat 135.537 kb on + strandat 135.538 kb on - strandat 135.539 kb on + strandat 135.539 kb on + strandat 135.539 kb on + strandat 135.539 kb on + strandat 135.539 kb on + strandat 135.540 kb on - strandat 135.540 kb on - strandat 135.540 kb on - strandat 135.540 kb on - strandat 135.540 kb on - strandat 135.986 kb on + strand, within GFF4490at 135.987 kb on - strand, within GFF4490at 135.987 kb on - strand, within GFF4490at 135.987 kb on - strand, within GFF4490at 136.046 kb on + strand, within GFF4490at 136.046 kb on + strand, within GFF4490at 136.046 kb on + strand, within GFF4490at 136.046 kb on + strand, within GFF4490at 136.046 kb on + strand, within GFF4490at 136.047 kb on - strand, within GFF4490at 136.047 kb on - strand, within GFF4490at 136.172 kb on + strand, within GFF4490at 136.172 kb on + strand, within GFF4490at 136.172 kb on + strand, within GFF4490at 136.172 kb on + strand, within GFF4490at 136.173 kb on - strand, within GFF4490at 136.334 kb on + strand, within GFF4490at 136.334 kb on + strand, within GFF4490at 136.334 kb on + strand, within GFF4490at 136.554 kb on + strand, within GFF4491at 136.554 kb on + strand, within GFF4491at 136.555 kb on - strand, within GFF4491at 136.555 kb on - strand, within GFF4491at 136.555 kb on - strand, within GFF4491at 136.737 kb on + strand, within GFF4491at 136.737 kb on + strand, within GFF4491at 136.737 kb on + strand, within GFF4491at 136.737 kb on + strand, within GFF4491at 136.902 kb on + strand, within GFF4491at 136.902 kb on + strand, within GFF4491at 136.902 kb on + strand, within GFF4491at 136.902 kb on + strand, within GFF4491at 136.903 kb on - strand, within GFF4491at 136.903 kb on - strand, within GFF4491at 136.903 kb on - strand, within GFF4491at 137.303 kb on + strand, within GFF4492at 137.304 kb on - strand, within GFF4492at 137.360 kb on + strand, within GFF4492at 137.360 kb on + strand, within GFF4492at 137.360 kb on + strand, within GFF4492at 137.360 kb on + strand, within GFF4492at 137.361 kb on - strand, within GFF4492at 137.361 kb on - strand, within GFF4492at 137.361 kb on - strand, within GFF4492at 137.361 kb on - strand, within GFF4492at 137.361 kb on - strand, within GFF4492at 137.361 kb on - strand, within GFF4492at 137.361 kb on - strand, within GFF4492at 137.376 kb on - strand, within GFF4492at 137.708 kb on + strand, within GFF4492at 137.708 kb on + strand, within GFF4492at 137.708 kb on + strand, within GFF4492at 137.708 kb on + strand, within GFF4492at 137.708 kb on + strand, within GFF4492at 137.708 kb on + strand, within GFF4492at 137.708 kb on + strand, within GFF4492at 137.708 kb on + strand, within GFF4492at 137.709 kb on - strand, within GFF4492at 137.709 kb on - strand, within GFF4492at 137.709 kb on - strand, within GFF4492at 137.709 kb on - strand, within GFF4492at 137.709 kb on - strand, within GFF4492at 137.709 kb on - strand, within GFF4492at 137.709 kb on - strand, within GFF4492at 137.709 kb on - strand, within GFF4492at 137.709 kb on - strand, within GFF4492at 137.709 kb on - strand, within GFF4492at 137.709 kb on - strand, within GFF4492at 137.803 kb on - strandat 137.803 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
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135,451 + -0.7
135,451 + +0.0
135,451 + +0.3
135,451 + +0.2
135,451 + +0.1
135,451 + +0.4
135,451 + +0.9
135,451 + -0.5
135,451 + -0.6
135,451 + +0.0
135,451 + -0.4
135,452 - +0.0
135,452 - -1.4
135,452 - -0.2
135,452 - -0.4
135,455 + -0.0
135,455 + -0.5
135,456 - +1.7
135,456 - +0.6
135,456 - -0.5
135,456 - +0.4
135,456 - +0.1
135,456 - +0.1
135,456 - -0.1
135,461 + -0.3
135,503 + -1.5
135,503 + +0.5
135,503 + -1.7
135,503 + -1.7
135,503 + -0.3
135,503 + +0.1
135,503 + -2.0
135,503 + +0.5
135,504 - -1.1
135,504 - -0.9
135,504 - -1.7
135,504 - +0.7
135,504 - -1.1
135,504 - -1.7
135,537 + +2.0
135,538 - -1.0
135,539 + +0.1
135,539 + -0.3
135,539 + -0.1
135,539 + +0.5
135,539 + +1.1
135,540 - -1.1
135,540 - -1.1
135,540 - -1.2
135,540 - +0.7
135,540 - -0.1
135,986 + GFF4490 0.52 -0.7
135,987 - GFF4490 0.52 -0.3
135,987 - GFF4490 0.52 +0.7
135,987 - GFF4490 0.52 +1.1
136,046 + GFF4490 0.58 -0.1
136,046 + GFF4490 0.58 -0.5
136,046 + GFF4490 0.58 +0.7
136,046 + GFF4490 0.58 -0.6
136,046 + GFF4490 0.58 -1.1
136,047 - GFF4490 0.58 -1.7
136,047 - GFF4490 0.58 -1.2
136,172 + GFF4490 0.71 +0.2
136,172 + GFF4490 0.71 -0.5
136,172 + GFF4490 0.71 -1.1
136,172 + GFF4490 0.71 -1.6
136,173 - GFF4490 0.71 -1.3
136,334 + GFF4490 0.87 -2.7
136,334 + GFF4490 0.87 +0.9
136,334 + GFF4490 0.87 -0.7
136,554 + GFF4491 0.17 +1.3
136,554 + GFF4491 0.17 -0.3
136,555 - GFF4491 0.17 +0.0
136,555 - GFF4491 0.17 +0.9
136,555 - GFF4491 0.17 -1.3
136,737 + GFF4491 0.46 -0.0
136,737 + GFF4491 0.46 -1.7
136,737 + GFF4491 0.46 -0.5
136,737 + GFF4491 0.46 -0.7
136,902 + GFF4491 0.72 -0.4
136,902 + GFF4491 0.72 -0.9
136,902 + GFF4491 0.72 +0.2
136,902 + GFF4491 0.72 +0.8
136,903 - GFF4491 0.72 -0.9
136,903 - GFF4491 0.72 -0.5
136,903 - GFF4491 0.72 -1.5
137,303 + GFF4492 0.32 -0.3
137,304 - GFF4492 0.32 +0.2
137,360 + GFF4492 0.40 -1.0
137,360 + GFF4492 0.40 -0.9
137,360 + GFF4492 0.40 -0.9
137,360 + GFF4492 0.40 -0.9
137,361 - GFF4492 0.40 -2.0
137,361 - GFF4492 0.40 -0.1
137,361 - GFF4492 0.40 -0.3
137,361 - GFF4492 0.40 -0.7
137,361 - GFF4492 0.40 +0.4
137,361 - GFF4492 0.40 -0.4
137,361 - GFF4492 0.40 +0.1
137,376 - GFF4492 0.42 -0.4
137,708 + GFF4492 0.90 -0.0
137,708 + GFF4492 0.90 -0.7
137,708 + GFF4492 0.90 +0.3
137,708 + GFF4492 0.90 -0.2
137,708 + GFF4492 0.90 -0.9
137,708 + GFF4492 0.90 -2.3
137,708 + GFF4492 0.90 -0.4
137,708 + GFF4492 0.90 +1.3
137,709 - GFF4492 0.90 -1.4
137,709 - GFF4492 0.90 -0.3
137,709 - GFF4492 0.90 -0.2
137,709 - GFF4492 0.90 -1.6
137,709 - GFF4492 0.90 -1.1
137,709 - GFF4492 0.90 -0.7
137,709 - GFF4492 0.90 -0.3
137,709 - GFF4492 0.90 -0.2
137,709 - GFF4492 0.90 -0.9
137,709 - GFF4492 0.90 +0.7
137,709 - GFF4492 0.90 -0.2
137,803 - -0.4
137,803 - -1.2

Or see this region's nucleotide sequence