Strain Fitness in Variovorax sp. SCN45 around GFF4488

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4487 and GFF4488 are separated by 134 nucleotidesGFF4488 and GFF4489 are separated by 98 nucleotides GFF4487 - putative secreted protein, at 131,453 to 132,931 GFF4487 GFF4488 - Metal-binding GTPase YjiA, at 133,066 to 134,121 GFF4488 GFF4489 - 23S rRNA (cytosine(1962)-C(5))-methyltransferase (EC 2.1.1.191), at 134,220 to 135,434 GFF4489 Position (kb) 133 134 135Strain fitness (log2 ratio) -2 -1 0 1 2at 132.326 kb on + strand, within GFF4487at 132.326 kb on + strand, within GFF4487at 132.327 kb on - strand, within GFF4487at 132.327 kb on - strand, within GFF4487at 132.327 kb on - strand, within GFF4487at 132.428 kb on + strand, within GFF4487at 132.429 kb on - strand, within GFF4487at 132.429 kb on - strand, within GFF4487at 132.429 kb on - strand, within GFF4487at 132.429 kb on - strand, within GFF4487at 132.563 kb on + strand, within GFF4487at 132.563 kb on + strand, within GFF4487at 132.563 kb on + strand, within GFF4487at 132.564 kb on - strand, within GFF4487at 132.564 kb on - strand, within GFF4487at 132.564 kb on - strand, within GFF4487at 132.564 kb on - strand, within GFF4487at 132.629 kb on + strand, within GFF4487at 132.629 kb on + strand, within GFF4487at 132.629 kb on + strand, within GFF4487at 132.629 kb on + strand, within GFF4487at 132.630 kb on - strand, within GFF4487at 132.630 kb on - strand, within GFF4487at 132.630 kb on - strand, within GFF4487at 132.630 kb on - strand, within GFF4487at 132.630 kb on - strand, within GFF4487at 132.929 kb on + strandat 132.929 kb on + strandat 132.929 kb on + strandat 132.929 kb on + strandat 132.929 kb on + strandat 132.929 kb on + strandat 132.930 kb on - strandat 132.930 kb on - strandat 132.930 kb on - strandat 132.930 kb on - strandat 132.930 kb on - strandat 132.930 kb on - strandat 132.930 kb on - strandat 132.930 kb on - strandat 132.937 kb on + strandat 132.937 kb on + strandat 132.937 kb on + strandat 132.937 kb on + strandat 132.937 kb on + strandat 132.937 kb on + strandat 132.937 kb on + strandat 132.937 kb on + strandat 132.937 kb on + strandat 132.937 kb on + strandat 132.937 kb on + strandat 132.937 kb on + strandat 132.937 kb on + strandat 132.937 kb on + strandat 132.937 kb on + strandat 132.938 kb on - strandat 132.938 kb on - strandat 132.938 kb on - strandat 132.938 kb on - strandat 132.938 kb on - strandat 132.938 kb on - strandat 132.938 kb on - strandat 132.938 kb on - strandat 132.938 kb on - strandat 132.938 kb on - strandat 132.938 kb on - strandat 132.938 kb on - strandat 132.938 kb on - strandat 132.938 kb on - strandat 132.938 kb on - strandat 132.938 kb on - strandat 132.938 kb on - strandat 132.938 kb on - strandat 132.938 kb on - strandat 132.938 kb on - strandat 132.938 kb on - strandat 132.938 kb on - strandat 132.938 kb on - strandat 133.253 kb on + strand, within GFF4488at 133.253 kb on + strand, within GFF4488at 133.253 kb on + strand, within GFF4488at 133.253 kb on + strand, within GFF4488at 133.254 kb on - strand, within GFF4488at 133.254 kb on - strand, within GFF4488at 133.254 kb on - strand, within GFF4488at 133.254 kb on - strand, within GFF4488at 133.254 kb on - strand, within GFF4488at 133.254 kb on - strand, within GFF4488at 133.254 kb on - strand, within GFF4488at 133.254 kb on - strand, within GFF4488at 133.274 kb on + strand, within GFF4488at 133.274 kb on + strand, within GFF4488at 133.274 kb on + strand, within GFF4488at 133.274 kb on + strand, within GFF4488at 133.274 kb on + strand, within GFF4488at 133.274 kb on + strand, within GFF4488at 133.274 kb on + strand, within GFF4488at 133.274 kb on + strand, within GFF4488at 133.275 kb on - strand, within GFF4488at 133.275 kb on - strand, within GFF4488at 133.275 kb on - strand, within GFF4488at 133.275 kb on - strand, within GFF4488at 133.275 kb on - strand, within GFF4488at 133.275 kb on - strand, within GFF4488at 133.275 kb on - strand, within GFF4488at 133.275 kb on - strand, within GFF4488at 133.275 kb on - strand, within GFF4488at 133.275 kb on - strand, within GFF4488at 133.340 kb on + strand, within GFF4488at 133.340 kb on + strand, within GFF4488at 133.340 kb on + strand, within GFF4488at 133.340 kb on + strand, within GFF4488at 133.340 kb on + strand, within GFF4488at 133.340 kb on + strand, within GFF4488at 133.341 kb on - strand, within GFF4488at 133.341 kb on - strand, within GFF4488at 133.341 kb on - strand, within GFF4488at 133.341 kb on - strand, within GFF4488at 133.341 kb on - strand, within GFF4488at 133.341 kb on - strand, within GFF4488at 133.757 kb on + strand, within GFF4488at 133.757 kb on + strand, within GFF4488at 133.757 kb on + strand, within GFF4488at 133.757 kb on + strand, within GFF4488at 133.757 kb on + strand, within GFF4488at 133.757 kb on + strand, within GFF4488at 133.757 kb on + strand, within GFF4488at 133.757 kb on + strand, within GFF4488at 133.757 kb on + strand, within GFF4488at 133.757 kb on + strand, within GFF4488at 133.757 kb on + strand, within GFF4488at 133.757 kb on + strand, within GFF4488at 133.757 kb on + strand, within GFF4488at 133.757 kb on + strand, within GFF4488at 133.757 kb on + strand, within GFF4488at 133.757 kb on + strand, within GFF4488at 133.758 kb on - strand, within GFF4488at 133.758 kb on - strand, within GFF4488at 133.758 kb on - strand, within GFF4488at 133.758 kb on - strand, within GFF4488at 134.186 kb on + strandat 134.186 kb on + strandat 134.187 kb on - strandat 134.187 kb on - strandat 134.187 kb on - strandat 134.187 kb on - strandat 134.187 kb on - strandat 134.257 kb on + strandat 134.258 kb on - strandat 134.258 kb on - strandat 134.258 kb on - strandat 134.258 kb on - strandat 134.258 kb on - strandat 134.258 kb on - strandat 134.258 kb on - strandat 134.323 kb on + strandat 134.323 kb on + strandat 134.324 kb on - strandat 134.324 kb on - strandat 134.464 kb on + strand, within GFF4489at 134.464 kb on + strand, within GFF4489at 134.464 kb on + strand, within GFF4489at 134.464 kb on + strand, within GFF4489at 134.464 kb on + strand, within GFF4489at 134.464 kb on + strand, within GFF4489at 134.464 kb on + strand, within GFF4489at 134.465 kb on - strand, within GFF4489at 134.465 kb on - strand, within GFF4489at 134.465 kb on - strand, within GFF4489at 134.465 kb on - strand, within GFF4489at 134.465 kb on - strand, within GFF4489at 134.604 kb on + strand, within GFF4489at 134.604 kb on + strand, within GFF4489at 134.604 kb on + strand, within GFF4489at 134.604 kb on + strand, within GFF4489at 134.605 kb on - strand, within GFF4489at 134.605 kb on - strand, within GFF4489at 134.605 kb on - strand, within GFF4489at 134.605 kb on - strand, within GFF4489at 134.755 kb on + strand, within GFF4489at 134.756 kb on - strand, within GFF4489at 134.756 kb on - strand, within GFF4489at 134.756 kb on - strand, within GFF4489at 134.756 kb on - strand, within GFF4489at 134.756 kb on - strand, within GFF4489at 134.756 kb on - strand, within GFF4489at 134.756 kb on - strand, within GFF4489at 134.839 kb on + strand, within GFF4489at 134.839 kb on + strand, within GFF4489at 134.839 kb on + strand, within GFF4489at 134.840 kb on - strand, within GFF4489at 134.840 kb on - strand, within GFF4489at 134.990 kb on - strand, within GFF4489at 135.091 kb on + strand, within GFF4489at 135.091 kb on + strand, within GFF4489at 135.091 kb on + strand, within GFF4489

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
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132,326 + GFF4487 0.59 -0.2
132,326 + GFF4487 0.59 -0.1
132,327 - GFF4487 0.59 -0.1
132,327 - GFF4487 0.59 -0.3
132,327 - GFF4487 0.59 -0.5
132,428 + GFF4487 0.66 -0.5
132,429 - GFF4487 0.66 +0.9
132,429 - GFF4487 0.66 -0.9
132,429 - GFF4487 0.66 -0.0
132,429 - GFF4487 0.66 +0.2
132,563 + GFF4487 0.75 -0.6
132,563 + GFF4487 0.75 -0.3
132,563 + GFF4487 0.75 -1.0
132,564 - GFF4487 0.75 -2.1
132,564 - GFF4487 0.75 +0.1
132,564 - GFF4487 0.75 +1.3
132,564 - GFF4487 0.75 -1.0
132,629 + GFF4487 0.80 -0.7
132,629 + GFF4487 0.80 +0.3
132,629 + GFF4487 0.80 +0.4
132,629 + GFF4487 0.80 +0.6
132,630 - GFF4487 0.80 -0.2
132,630 - GFF4487 0.80 -0.1
132,630 - GFF4487 0.80 +0.1
132,630 - GFF4487 0.80 +0.3
132,630 - GFF4487 0.80 +0.3
132,929 + -0.1
132,929 + -0.5
132,929 + -0.1
132,929 + -0.3
132,929 + -0.3
132,929 + +0.4
132,930 - -0.7
132,930 - -0.7
132,930 - -0.1
132,930 - +1.2
132,930 - -0.3
132,930 - -0.3
132,930 - +0.1
132,930 - +0.0
132,937 + -0.1
132,937 + -0.6
132,937 + -0.4
132,937 + -0.3
132,937 + +0.2
132,937 + -0.6
132,937 + +0.1
132,937 + +0.5
132,937 + -0.3
132,937 + -1.3
132,937 + -0.3
132,937 + -0.0
132,937 + +0.2
132,937 + -0.8
132,937 + +0.1
132,938 - -0.3
132,938 - -1.5
132,938 - -0.8
132,938 - +0.7
132,938 - -0.9
132,938 - -1.4
132,938 - -0.1
132,938 - +0.4
132,938 - -0.0
132,938 - -0.3
132,938 - +0.1
132,938 - -1.7
132,938 - +0.5
132,938 - +0.2
132,938 - +0.7
132,938 - -0.2
132,938 - -0.3
132,938 - +0.4
132,938 - +1.2
132,938 - -0.5
132,938 - +0.2
132,938 - -0.2
132,938 - +0.3
133,253 + GFF4488 0.18 +0.7
133,253 + GFF4488 0.18 +0.2
133,253 + GFF4488 0.18 -0.3
133,253 + GFF4488 0.18 +0.7
133,254 - GFF4488 0.18 -0.1
133,254 - GFF4488 0.18 +0.2
133,254 - GFF4488 0.18 +0.6
133,254 - GFF4488 0.18 +0.1
133,254 - GFF4488 0.18 +0.6
133,254 - GFF4488 0.18 +0.1
133,254 - GFF4488 0.18 -0.1
133,254 - GFF4488 0.18 +0.3
133,274 + GFF4488 0.20 +0.4
133,274 + GFF4488 0.20 +0.2
133,274 + GFF4488 0.20 -0.3
133,274 + GFF4488 0.20 +0.0
133,274 + GFF4488 0.20 +0.8
133,274 + GFF4488 0.20 -1.1
133,274 + GFF4488 0.20 +0.9
133,274 + GFF4488 0.20 -0.1
133,275 - GFF4488 0.20 +0.2
133,275 - GFF4488 0.20 +0.9
133,275 - GFF4488 0.20 +1.1
133,275 - GFF4488 0.20 +2.3
133,275 - GFF4488 0.20 +1.7
133,275 - GFF4488 0.20 -0.8
133,275 - GFF4488 0.20 -0.7
133,275 - GFF4488 0.20 +0.8
133,275 - GFF4488 0.20 +0.2
133,275 - GFF4488 0.20 +0.1
133,340 + GFF4488 0.26 +0.4
133,340 + GFF4488 0.26 -0.1
133,340 + GFF4488 0.26 +0.5
133,340 + GFF4488 0.26 +0.2
133,340 + GFF4488 0.26 -0.9
133,340 + GFF4488 0.26 +0.2
133,341 - GFF4488 0.26 -0.0
133,341 - GFF4488 0.26 -0.7
133,341 - GFF4488 0.26 +0.3
133,341 - GFF4488 0.26 +0.3
133,341 - GFF4488 0.26 -0.1
133,341 - GFF4488 0.26 +0.4
133,757 + GFF4488 0.65 -0.0
133,757 + GFF4488 0.65 +0.6
133,757 + GFF4488 0.65 -1.0
133,757 + GFF4488 0.65 -0.9
133,757 + GFF4488 0.65 -0.1
133,757 + GFF4488 0.65 +0.7
133,757 + GFF4488 0.65 -0.0
133,757 + GFF4488 0.65 -0.3
133,757 + GFF4488 0.65 -0.0
133,757 + GFF4488 0.65 +0.2
133,757 + GFF4488 0.65 -1.3
133,757 + GFF4488 0.65 -0.3
133,757 + GFF4488 0.65 -0.9
133,757 + GFF4488 0.65 -0.5
133,757 + GFF4488 0.65 +0.0
133,757 + GFF4488 0.65 +1.7
133,758 - GFF4488 0.66 -0.7
133,758 - GFF4488 0.66 -0.1
133,758 - GFF4488 0.66 +0.6
133,758 - GFF4488 0.66 -0.3
134,186 + +0.8
134,186 + +0.9
134,187 - -0.4
134,187 - -0.3
134,187 - +0.5
134,187 - -0.5
134,187 - +0.5
134,257 + +0.6
134,258 - -0.6
134,258 - +0.9
134,258 - +1.3
134,258 - -0.1
134,258 - +0.9
134,258 - -0.3
134,258 - -1.3
134,323 + -0.3
134,323 + -1.7
134,324 - -0.1
134,324 - -1.0
134,464 + GFF4489 0.20 +0.5
134,464 + GFF4489 0.20 -0.3
134,464 + GFF4489 0.20 -2.0
134,464 + GFF4489 0.20 -0.2
134,464 + GFF4489 0.20 +0.2
134,464 + GFF4489 0.20 +0.3
134,464 + GFF4489 0.20 +1.1
134,465 - GFF4489 0.20 +0.3
134,465 - GFF4489 0.20 +0.7
134,465 - GFF4489 0.20 -0.3
134,465 - GFF4489 0.20 +0.3
134,465 - GFF4489 0.20 -0.3
134,604 + GFF4489 0.32 -0.0
134,604 + GFF4489 0.32 +1.5
134,604 + GFF4489 0.32 +1.2
134,604 + GFF4489 0.32 -0.2
134,605 - GFF4489 0.32 +0.9
134,605 - GFF4489 0.32 +0.3
134,605 - GFF4489 0.32 +0.1
134,605 - GFF4489 0.32 -2.7
134,755 + GFF4489 0.44 -0.7
134,756 - GFF4489 0.44 -2.2
134,756 - GFF4489 0.44 -0.1
134,756 - GFF4489 0.44 +0.1
134,756 - GFF4489 0.44 -2.3
134,756 - GFF4489 0.44 +0.1
134,756 - GFF4489 0.44 +1.2
134,756 - GFF4489 0.44 +0.7
134,839 + GFF4489 0.51 -0.2
134,839 + GFF4489 0.51 -0.4
134,839 + GFF4489 0.51 +0.8
134,840 - GFF4489 0.51 -1.6
134,840 - GFF4489 0.51 +1.0
134,990 - GFF4489 0.63 +1.7
135,091 + GFF4489 0.72 -0.1
135,091 + GFF4489 0.72 -0.6
135,091 + GFF4489 0.72 -0.0

Or see this region's nucleotide sequence