Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4371 and GFF4372 are separated by 29 nucleotides
GFF4371 - FIG074102: hypothetical protein, at 98 to 232
GFF4371
GFF4372 - ATP-dependent DNA helicase UvrD/PcrA (EC 3.6.4.12), at 262 to 2,061
GFF4372
Position (kb) 0
1 Strain fitness (log2 ratio) -2
-1
0
1
2 at 0.059 kb on + strand at 0.059 kb on + strand at 0.059 kb on + strand at 0.059 kb on + strand at 0.059 kb on + strand at 0.059 kb on + strand at 0.059 kb on + strand at 0.059 kb on + strand at 0.059 kb on + strand at 0.059 kb on + strand at 0.125 kb on + strand, within GFF4371 at 0.125 kb on + strand, within GFF4371 at 0.125 kb on + strand, within GFF4371 at 0.125 kb on + strand, within GFF4371 at 0.125 kb on + strand, within GFF4371 at 0.125 kb on + strand, within GFF4371 at 0.126 kb on - strand, within GFF4371 at 0.126 kb on - strand, within GFF4371 at 0.126 kb on - strand, within GFF4371 at 0.126 kb on - strand, within GFF4371 at 0.126 kb on - strand, within GFF4371 at 0.126 kb on - strand, within GFF4371 at 0.131 kb on - strand, within GFF4371 at 0.131 kb on - strand, within GFF4371 at 0.131 kb on - strand, within GFF4371 at 0.175 kb on + strand, within GFF4371 at 0.256 kb on + strand at 0.256 kb on + strand at 0.256 kb on + strand at 0.256 kb on + strand at 0.257 kb on - strand at 0.257 kb on - strand at 0.257 kb on - strand at 0.257 kb on - strand at 0.257 kb on - strand at 0.263 kb on + strand at 0.263 kb on + strand at 0.264 kb on - strand at 0.264 kb on - strand at 0.264 kb on - strand at 0.264 kb on - strand at 0.288 kb on + strand at 0.288 kb on + strand at 0.288 kb on + strand at 0.289 kb on - strand at 0.318 kb on - strand at 0.332 kb on + strand at 0.342 kb on + strand at 0.342 kb on + strand at 0.342 kb on + strand at 0.343 kb on - strand at 0.343 kb on - strand at 0.398 kb on + strand at 0.398 kb on + strand at 0.398 kb on + strand at 0.398 kb on + strand at 0.398 kb on + strand at 0.398 kb on + strand at 0.398 kb on + strand at 0.398 kb on + strand at 0.398 kb on + strand at 0.398 kb on + strand at 0.399 kb on - strand at 0.399 kb on - strand at 0.399 kb on - strand at 0.399 kb on - strand at 0.399 kb on - strand at 0.470 kb on + strand, within GFF4372 at 0.470 kb on + strand, within GFF4372 at 0.470 kb on + strand, within GFF4372 at 0.471 kb on - strand, within GFF4372 at 0.471 kb on - strand, within GFF4372 at 0.471 kb on - strand, within GFF4372 at 0.471 kb on - strand, within GFF4372 at 0.522 kb on + strand, within GFF4372 at 0.522 kb on + strand, within GFF4372 at 0.522 kb on + strand, within GFF4372 at 0.522 kb on + strand, within GFF4372 at 0.522 kb on + strand, within GFF4372 at 0.522 kb on + strand, within GFF4372 at 0.522 kb on + strand, within GFF4372 at 0.522 kb on + strand, within GFF4372 at 0.523 kb on - strand, within GFF4372 at 0.523 kb on - strand, within GFF4372 at 0.523 kb on - strand, within GFF4372 at 0.523 kb on - strand, within GFF4372 at 0.523 kb on - strand, within GFF4372 at 0.523 kb on - strand, within GFF4372 at 0.523 kb on - strand, within GFF4372 at 0.527 kb on - strand, within GFF4372 at 0.675 kb on - strand, within GFF4372 at 0.719 kb on + strand, within GFF4372 at 0.719 kb on + strand, within GFF4372 at 0.719 kb on + strand, within GFF4372 at 0.719 kb on + strand, within GFF4372 at 0.720 kb on - strand, within GFF4372 at 0.720 kb on - strand, within GFF4372 at 0.720 kb on - strand, within GFF4372 at 0.720 kb on - strand, within GFF4372 at 0.827 kb on - strand, within GFF4372 at 0.857 kb on + strand, within GFF4372 at 0.857 kb on + strand, within GFF4372 at 0.857 kb on + strand, within GFF4372 at 0.857 kb on + strand, within GFF4372 at 0.857 kb on + strand, within GFF4372 at 0.857 kb on + strand, within GFF4372 at 0.857 kb on + strand, within GFF4372 at 0.857 kb on + strand, within GFF4372 at 0.857 kb on + strand, within GFF4372 at 0.857 kb on + strand, within GFF4372 at 0.857 kb on + strand, within GFF4372 at 0.857 kb on + strand, within GFF4372 at 0.857 kb on + strand, within GFF4372 at 0.857 kb on + strand, within GFF4372 at 0.857 kb on + strand, within GFF4372 at 0.857 kb on + strand, within GFF4372 at 0.857 kb on + strand, within GFF4372 at 0.857 kb on + strand, within GFF4372 at 0.857 kb on + strand, within GFF4372 at 0.857 kb on + strand, within GFF4372 at 0.857 kb on + strand, within GFF4372 at 0.857 kb on + strand, within GFF4372 at 0.857 kb on + strand, within GFF4372 at 0.857 kb on + strand, within GFF4372 at 0.857 kb on + strand, within GFF4372 at 0.858 kb on - strand, within GFF4372 at 0.858 kb on - strand, within GFF4372 at 0.858 kb on - strand, within GFF4372 at 0.858 kb on - strand, within GFF4372 at 0.858 kb on - strand, within GFF4372 at 0.858 kb on - strand, within GFF4372 at 0.858 kb on - strand, within GFF4372 at 0.858 kb on - strand, within GFF4372 at 0.858 kb on - strand, within GFF4372 at 0.858 kb on - strand, within GFF4372 at 0.858 kb on - strand, within GFF4372 at 0.858 kb on - strand, within GFF4372 at 0.858 kb on - strand, within GFF4372 at 0.858 kb on - strand, within GFF4372 at 0.858 kb on - strand, within GFF4372 at 0.879 kb on + strand, within GFF4372 at 0.879 kb on + strand, within GFF4372 at 0.902 kb on + strand, within GFF4372 at 1.024 kb on + strand, within GFF4372 at 1.024 kb on + strand, within GFF4372 at 1.024 kb on + strand, within GFF4372 at 1.024 kb on + strand, within GFF4372 at 1.024 kb on + strand, within GFF4372 at 1.024 kb on + strand, within GFF4372 at 1.024 kb on + strand, within GFF4372 at 1.024 kb on + strand, within GFF4372 at 1.024 kb on + strand, within GFF4372 at 1.024 kb on + strand, within GFF4372 at 1.024 kb on + strand, within GFF4372 at 1.025 kb on - strand, within GFF4372 at 1.025 kb on - strand, within GFF4372 at 1.025 kb on - strand, within GFF4372 at 1.025 kb on - strand, within GFF4372 at 1.025 kb on - strand, within GFF4372 at 1.025 kb on - strand, within GFF4372 at 1.025 kb on - strand, within GFF4372 at 1.025 kb on - strand, within GFF4372 at 1.025 kb on - strand, within GFF4372 at 1.190 kb on + strand, within GFF4372 at 1.190 kb on + strand, within GFF4372 at 1.190 kb on + strand, within GFF4372 at 1.190 kb on + strand, within GFF4372 at 1.190 kb on + strand, within GFF4372 at 1.191 kb on - strand, within GFF4372 at 1.191 kb on - strand, within GFF4372 at 1.191 kb on - strand, within GFF4372 at 1.191 kb on - strand, within GFF4372 at 1.191 kb on - strand, within GFF4372 at 1.202 kb on + strand, within GFF4372 at 1.203 kb on - strand, within GFF4372 at 1.203 kb on - strand, within GFF4372 at 1.229 kb on + strand, within GFF4372 at 1.230 kb on - strand, within GFF4372 at 1.230 kb on - strand, within GFF4372 at 1.230 kb on - strand, within GFF4372 at 1.230 kb on - strand, within GFF4372
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL remove 59 + +0.0 59 + -0.9 59 + -0.2 59 + +0.3 59 + +1.4 59 + -1.3 59 + -0.6 59 + -0.8 59 + -0.4 59 + -0.5 125 + GFF4371 0.20 +0.0 125 + GFF4371 0.20 +0.2 125 + GFF4371 0.20 -0.3 125 + GFF4371 0.20 +0.5 125 + GFF4371 0.20 +0.5 125 + GFF4371 0.20 -0.1 126 - GFF4371 0.21 +0.0 126 - GFF4371 0.21 -0.5 126 - GFF4371 0.21 +0.4 126 - GFF4371 0.21 +0.4 126 - GFF4371 0.21 +0.3 126 - GFF4371 0.21 +0.3 131 - GFF4371 0.24 +0.2 131 - GFF4371 0.24 +0.6 131 - GFF4371 0.24 -0.5 175 + GFF4371 0.57 -2.0 256 + +1.0 256 + +0.2 256 + -0.4 256 + +1.4 257 - +0.6 257 - -0.1 257 - -0.1 257 - +0.4 257 - -1.0 263 + -1.8 263 + -1.3 264 - -0.2 264 - -0.8 264 - -0.4 264 - +0.5 288 + +2.3 288 + +0.8 288 + -0.4 289 - -0.9 318 - +0.1 332 + +0.3 342 + -0.5 342 + +0.8 342 + -0.1 343 - +0.2 343 - -1.8 398 + +0.7 398 + +0.1 398 + -1.1 398 + -0.4 398 + -0.5 398 + -0.1 398 + -0.5 398 + +0.4 398 + -0.9 398 + +0.1 399 - -0.6 399 - +1.9 399 - -0.7 399 - -0.3 399 - +0.5 470 + GFF4372 0.12 +0.4 470 + GFF4372 0.12 -0.8 470 + GFF4372 0.12 +2.7 471 - GFF4372 0.12 -0.6 471 - GFF4372 0.12 -0.1 471 - GFF4372 0.12 -0.9 471 - GFF4372 0.12 -0.1 522 + GFF4372 0.14 -0.3 522 + GFF4372 0.14 -0.2 522 + GFF4372 0.14 -0.5 522 + GFF4372 0.14 +2.3 522 + GFF4372 0.14 -0.9 522 + GFF4372 0.14 -0.5 522 + GFF4372 0.14 +0.1 522 + GFF4372 0.14 +0.1 523 - GFF4372 0.14 -0.9 523 - GFF4372 0.14 -0.1 523 - GFF4372 0.14 -1.3 523 - GFF4372 0.14 +0.6 523 - GFF4372 0.14 -1.4 523 - GFF4372 0.14 +0.9 523 - GFF4372 0.14 -0.4 527 - GFF4372 0.15 -0.2 675 - GFF4372 0.23 -0.3 719 + GFF4372 0.25 -0.2 719 + GFF4372 0.25 -0.3 719 + GFF4372 0.25 +2.3 719 + GFF4372 0.25 -0.1 720 - GFF4372 0.25 +0.0 720 - GFF4372 0.25 -0.1 720 - GFF4372 0.25 -0.3 720 - GFF4372 0.25 -0.7 827 - GFF4372 0.31 -0.8 857 + GFF4372 0.33 -0.7 857 + GFF4372 0.33 -0.2 857 + GFF4372 0.33 -0.3 857 + GFF4372 0.33 -0.6 857 + GFF4372 0.33 -0.5 857 + GFF4372 0.33 -0.4 857 + GFF4372 0.33 -0.3 857 + GFF4372 0.33 +0.8 857 + GFF4372 0.33 +0.2 857 + GFF4372 0.33 -2.1 857 + GFF4372 0.33 +0.1 857 + GFF4372 0.33 -1.1 857 + GFF4372 0.33 -1.2 857 + GFF4372 0.33 -0.5 857 + GFF4372 0.33 -0.9 857 + GFF4372 0.33 -0.7 857 + GFF4372 0.33 -0.4 857 + GFF4372 0.33 -0.3 857 + GFF4372 0.33 -0.3 857 + GFF4372 0.33 +0.7 857 + GFF4372 0.33 +1.0 857 + GFF4372 0.33 -0.5 857 + GFF4372 0.33 -0.5 857 + GFF4372 0.33 -0.5 857 + GFF4372 0.33 +0.4 858 - GFF4372 0.33 +0.7 858 - GFF4372 0.33 -1.5 858 - GFF4372 0.33 +0.5 858 - GFF4372 0.33 -1.5 858 - GFF4372 0.33 +0.4 858 - GFF4372 0.33 -0.0 858 - GFF4372 0.33 -0.8 858 - GFF4372 0.33 -0.4 858 - GFF4372 0.33 -0.3 858 - GFF4372 0.33 -0.6 858 - GFF4372 0.33 -1.3 858 - GFF4372 0.33 +0.8 858 - GFF4372 0.33 +0.1 858 - GFF4372 0.33 -0.4 858 - GFF4372 0.33 -0.7 879 + GFF4372 0.34 +0.8 879 + GFF4372 0.34 -1.1 902 + GFF4372 0.36 -0.5 1,024 + GFF4372 0.42 -0.3 1,024 + GFF4372 0.42 -0.2 1,024 + GFF4372 0.42 -1.4 1,024 + GFF4372 0.42 -0.5 1,024 + GFF4372 0.42 -0.9 1,024 + GFF4372 0.42 -1.1 1,024 + GFF4372 0.42 +0.1 1,024 + GFF4372 0.42 +0.1 1,024 + GFF4372 0.42 +0.1 1,024 + GFF4372 0.42 -0.5 1,024 + GFF4372 0.42 -0.2 1,025 - GFF4372 0.42 -0.1 1,025 - GFF4372 0.42 +0.7 1,025 - GFF4372 0.42 -0.3 1,025 - GFF4372 0.42 +0.3 1,025 - GFF4372 0.42 -0.5 1,025 - GFF4372 0.42 +0.1 1,025 - GFF4372 0.42 +0.4 1,025 - GFF4372 0.42 -0.3 1,025 - GFF4372 0.42 -0.4 1,190 + GFF4372 0.52 +1.3 1,190 + GFF4372 0.52 +0.2 1,190 + GFF4372 0.52 +0.3 1,190 + GFF4372 0.52 +0.0 1,190 + GFF4372 0.52 +0.1 1,191 - GFF4372 0.52 +0.6 1,191 - GFF4372 0.52 +0.1 1,191 - GFF4372 0.52 -0.0 1,191 - GFF4372 0.52 +0.1 1,191 - GFF4372 0.52 +1.0 1,202 + GFF4372 0.52 -1.0 1,203 - GFF4372 0.52 -0.0 1,203 - GFF4372 0.52 -0.0 1,229 + GFF4372 0.54 +1.3 1,230 - GFF4372 0.54 -0.3 1,230 - GFF4372 0.54 -0.3 1,230 - GFF4372 0.54 -1.3 1,230 - GFF4372 0.54 -0.2
Or see this region's nucleotide sequence