Strain Fitness in Variovorax sp. SCN45 around GFF3892

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
90,304	-				-0.4
90,304	-				-0.3
90,587	-		GFF3891	0.30	-1.2
90,612	+		GFF3891	0.33	-0.4
90,612	+		GFF3891	0.33	-0.1
90,612	+		GFF3891	0.33	-0.1
90,612	+		GFF3891	0.33	+0.9
90,612	+		GFF3891	0.33	-0.4
90,612	+		GFF3891	0.33	-0.7
90,612	+		GFF3891	0.33	-0.5
90,612	+		GFF3891	0.33	+0.1
90,613	-		GFF3891	0.33	-1.6
90,613	-		GFF3891	0.33	-0.4
90,613	-		GFF3891	0.33	+0.5
90,613	-		GFF3891	0.33	-1.0
90,613	-		GFF3891	0.33	-0.8
90,613	-		GFF3891	0.33	+0.2
90,613	-		GFF3891	0.33	+0.0
90,613	-		GFF3891	0.33	+0.2
90,960	+		GFF3891	0.70	-0.6
90,961	-		GFF3891	0.70	-2.1
90,961	-		GFF3891	0.70	-0.3
90,961	-		GFF3891	0.70	-2.0
90,996	+		GFF3891	0.73	-0.6
90,996	+		GFF3891	0.73	+0.5
90,996	+		GFF3891	0.73	-1.6
90,996	+		GFF3891	0.73	-0.2
90,996	+		GFF3891	0.73	-1.9
90,996	+		GFF3891	0.73	+1.2
90,996	+		GFF3891	0.73	-0.9
90,996	+		GFF3891	0.73	-0.4
90,997	-		GFF3891	0.74	+0.8
90,997	-		GFF3891	0.74	+0.3
90,997	-		GFF3891	0.74	-0.2
90,997	-		GFF3891	0.74	+0.6
90,997	-		GFF3891	0.74	+0.2
91,068	+		GFF3891	0.81	-0.0
91,282	+		GFF3892	0.33	-1.0
91,283	-		GFF3892	0.34	-0.2
91,328	+		GFF3892	0.73	-0.3
91,386	+				+0.2
91,386	+				-0.3
91,402	+				+0.0
91,402	+				-0.2
91,402	+				-0.3
91,402	+				-0.7
91,402	+				-0.9
91,402	+				-2.7
91,402	+				-2.2
91,403	-				-0.5
91,403	-				-0.7
91,403	-				+0.1
91,403	-				+1.2
91,403	-				-2.3
91,415	+				-2.4
91,416	+				-0.2
91,416	+				-0.0
91,416	+				+0.1
91,417	-				+0.2
91,417	-				-0.8
91,417	-				-0.0
91,417	-				-0.4
91,420	-				-1.5
91,420	-				-0.8
91,426	-				+0.2
91,451	+				-0.9
91,451	+				-1.1
91,452	-				-0.4
91,458	-				+0.0
91,458	-				+0.8
91,558	+				-1.7
91,558	+				-1.2
91,558	+				-0.5
91,558	+				+0.1
91,558	+				+0.7
91,558	+				-0.3
91,558	+				+0.0
91,558	+				+1.5
91,558	+				+0.0
91,558	+				-2.2
91,558	+				-0.2
91,559	-				-0.4
91,559	-				-0.8
91,573	+				-0.2
91,847	+				-0.1
91,847	+				-0.8
91,847	+				-0.2
91,847	+				-0.7
91,847	+				+0.5
91,847	+				+1.5
91,847	+				-0.5
91,847	+				+0.3
91,847	+				-0.3
91,847	+				-1.5
91,847	+				-0.3
91,847	+				-0.2
91,847	+				+0.1
91,847	+				-0.3
91,847	+				+0.6
91,848	-				-0.4
91,848	-				-3.0
91,848	-				-0.0
92,322	+		GFF3893	0.17	-0.1