Strain Fitness in Variovorax sp. SCN45 around GFF3768

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3766 and GFF3767 overlap by 14 nucleotidesGFF3767 and GFF3768 overlap by 4 nucleotidesGFF3768 and GFF3769 are separated by 17 nucleotides GFF3766 - hypothetical protein, at 257,741 to 258,472 GFF3766 GFF3767 - 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases, at 258,459 to 259,235 GFF3767 GFF3768 - no description, at 259,232 to 260,482 GFF3768 GFF3769 - FIG022979: MoxR-like ATPases, at 260,500 to 261,495 GFF3769 Position (kb) 259 260 261Strain fitness (log2 ratio) -2 -1 0 1at 258.347 kb on + strand, within GFF3766at 258.348 kb on - strand, within GFF3766at 258.348 kb on - strand, within GFF3766at 258.348 kb on - strand, within GFF3766at 258.348 kb on - strand, within GFF3766at 258.380 kb on + strand, within GFF3766at 258.381 kb on - strand, within GFF3766at 258.381 kb on - strand, within GFF3766at 258.404 kb on + strandat 258.404 kb on + strandat 258.404 kb on + strandat 258.404 kb on + strandat 258.404 kb on + strandat 258.404 kb on + strandat 258.404 kb on + strandat 258.404 kb on + strandat 258.405 kb on - strandat 258.405 kb on - strandat 258.405 kb on - strandat 258.405 kb on - strandat 258.405 kb on - strandat 258.964 kb on - strand, within GFF3767at 259.119 kb on + strand, within GFF3767at 259.119 kb on + strand, within GFF3767at 259.367 kb on + strand, within GFF3768at 259.367 kb on + strand, within GFF3768at 259.367 kb on + strand, within GFF3768at 259.367 kb on + strand, within GFF3768at 259.367 kb on + strand, within GFF3768at 259.367 kb on + strand, within GFF3768at 259.367 kb on + strand, within GFF3768at 259.367 kb on + strand, within GFF3768at 259.367 kb on + strand, within GFF3768at 259.367 kb on + strand, within GFF3768at 259.367 kb on + strand, within GFF3768at 259.367 kb on + strand, within GFF3768at 259.367 kb on + strand, within GFF3768at 259.368 kb on - strand, within GFF3768at 259.368 kb on - strand, within GFF3768at 259.368 kb on - strand, within GFF3768at 259.368 kb on - strand, within GFF3768at 259.368 kb on - strand, within GFF3768at 259.368 kb on - strand, within GFF3768at 259.368 kb on - strand, within GFF3768at 259.368 kb on - strand, within GFF3768at 259.368 kb on - strand, within GFF3768at 259.472 kb on + strand, within GFF3768at 259.473 kb on - strand, within GFF3768at 259.473 kb on - strand, within GFF3768at 259.473 kb on - strand, within GFF3768at 259.550 kb on + strand, within GFF3768at 259.550 kb on + strand, within GFF3768at 259.550 kb on + strand, within GFF3768at 259.550 kb on + strand, within GFF3768at 259.551 kb on - strand, within GFF3768at 259.765 kb on + strand, within GFF3768at 259.765 kb on + strand, within GFF3768at 259.765 kb on + strand, within GFF3768at 259.765 kb on + strand, within GFF3768at 259.766 kb on - strand, within GFF3768at 259.766 kb on - strand, within GFF3768at 259.766 kb on - strand, within GFF3768at 259.766 kb on - strand, within GFF3768at 260.261 kb on + strand, within GFF3768at 260.261 kb on + strand, within GFF3768at 260.713 kb on + strand, within GFF3769at 260.917 kb on + strand, within GFF3769at 260.917 kb on + strand, within GFF3769at 260.917 kb on + strand, within GFF3769at 260.918 kb on - strand, within GFF3769at 260.918 kb on - strand, within GFF3769at 260.918 kb on - strand, within GFF3769at 260.918 kb on - strand, within GFF3769at 261.007 kb on + strand, within GFF3769at 261.007 kb on + strand, within GFF3769at 261.008 kb on - strand, within GFF3769at 261.008 kb on - strand, within GFF3769at 261.179 kb on + strand, within GFF3769at 261.179 kb on + strand, within GFF3769at 261.180 kb on - strand, within GFF3769at 261.180 kb on - strand, within GFF3769at 261.226 kb on + strand, within GFF3769at 261.368 kb on + strand, within GFF3769at 261.369 kb on - strand, within GFF3769

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
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258,347 + GFF3766 0.83 -0.2
258,348 - GFF3766 0.83 -0.5
258,348 - GFF3766 0.83 +0.2
258,348 - GFF3766 0.83 -0.1
258,348 - GFF3766 0.83 -0.7
258,380 + GFF3766 0.87 +0.1
258,381 - GFF3766 0.87 -0.4
258,381 - GFF3766 0.87 -0.9
258,404 + +0.1
258,404 + -1.6
258,404 + -1.2
258,404 + +0.2
258,404 + +1.3
258,404 + +0.1
258,404 + -1.9
258,404 + -0.4
258,405 - -0.2
258,405 - +1.1
258,405 - -0.1
258,405 - +1.1
258,405 - -0.6
258,964 - GFF3767 0.65 -0.5
259,119 + GFF3767 0.85 +0.9
259,119 + GFF3767 0.85 -0.5
259,367 + GFF3768 0.11 -1.2
259,367 + GFF3768 0.11 -0.5
259,367 + GFF3768 0.11 +0.1
259,367 + GFF3768 0.11 -0.6
259,367 + GFF3768 0.11 +0.1
259,367 + GFF3768 0.11 -0.1
259,367 + GFF3768 0.11 -0.8
259,367 + GFF3768 0.11 +1.5
259,367 + GFF3768 0.11 +0.5
259,367 + GFF3768 0.11 +0.7
259,367 + GFF3768 0.11 +0.2
259,367 + GFF3768 0.11 +0.4
259,367 + GFF3768 0.11 +0.1
259,368 - GFF3768 0.11 +0.0
259,368 - GFF3768 0.11 -0.7
259,368 - GFF3768 0.11 -0.4
259,368 - GFF3768 0.11 +1.3
259,368 - GFF3768 0.11 +0.5
259,368 - GFF3768 0.11 -0.4
259,368 - GFF3768 0.11 -0.5
259,368 - GFF3768 0.11 -0.1
259,368 - GFF3768 0.11 +0.3
259,472 + GFF3768 0.19 +0.7
259,473 - GFF3768 0.19 +0.3
259,473 - GFF3768 0.19 -0.2
259,473 - GFF3768 0.19 -1.0
259,550 + GFF3768 0.25 -1.2
259,550 + GFF3768 0.25 +0.8
259,550 + GFF3768 0.25 -0.3
259,550 + GFF3768 0.25 +0.7
259,551 - GFF3768 0.25 -1.6
259,765 + GFF3768 0.43 -0.5
259,765 + GFF3768 0.43 -0.2
259,765 + GFF3768 0.43 +0.6
259,765 + GFF3768 0.43 +0.7
259,766 - GFF3768 0.43 +0.9
259,766 - GFF3768 0.43 +0.2
259,766 - GFF3768 0.43 -0.2
259,766 - GFF3768 0.43 -0.8
260,261 + GFF3768 0.82 -0.3
260,261 + GFF3768 0.82 +0.4
260,713 + GFF3769 0.21 +0.0
260,917 + GFF3769 0.42 -1.1
260,917 + GFF3769 0.42 +0.0
260,917 + GFF3769 0.42 -0.2
260,918 - GFF3769 0.42 -0.0
260,918 - GFF3769 0.42 +0.1
260,918 - GFF3769 0.42 +0.8
260,918 - GFF3769 0.42 +1.0
261,007 + GFF3769 0.51 +0.7
261,007 + GFF3769 0.51 +1.2
261,008 - GFF3769 0.51 -0.3
261,008 - GFF3769 0.51 +0.3
261,179 + GFF3769 0.68 -1.0
261,179 + GFF3769 0.68 -0.7
261,180 - GFF3769 0.68 -0.2
261,180 - GFF3769 0.68 +1.0
261,226 + GFF3769 0.73 -0.6
261,368 + GFF3769 0.87 -0.6
261,369 - GFF3769 0.87 +1.3

Or see this region's nucleotide sequence