Strain Fitness in Variovorax sp. SCN45 around GFF3754

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3753 and GFF3754 are separated by 71 nucleotidesGFF3754 and GFF3755 are separated by 249 nucleotides GFF3753 - Hydroxymethylpyrimidine ABC transporter, substrate-binding component, at 246,823 to 247,842 GFF3753 GFF3754 - Fumarylacetoacetate hydrolase family protein, at 247,914 to 248,852 GFF3754 GFF3755 - Transcriptional regulator, GntR family, at 249,102 to 249,788 GFF3755 Position (kb) 247 248 249Strain fitness (log2 ratio) -2 -1 0 1 2at 246.935 kb on + strand, within GFF3753at 246.935 kb on + strand, within GFF3753at 246.935 kb on + strand, within GFF3753at 246.935 kb on + strand, within GFF3753at 246.936 kb on - strand, within GFF3753at 247.076 kb on + strand, within GFF3753at 247.077 kb on - strand, within GFF3753at 247.083 kb on - strand, within GFF3753at 247.169 kb on + strand, within GFF3753at 247.193 kb on + strand, within GFF3753at 247.193 kb on + strand, within GFF3753at 247.193 kb on + strand, within GFF3753at 247.193 kb on + strand, within GFF3753at 247.193 kb on + strand, within GFF3753at 247.568 kb on + strand, within GFF3753at 247.568 kb on + strand, within GFF3753at 247.569 kb on - strand, within GFF3753at 247.727 kb on + strand, within GFF3753at 247.727 kb on + strand, within GFF3753at 247.727 kb on + strand, within GFF3753at 247.727 kb on + strand, within GFF3753at 247.727 kb on + strand, within GFF3753at 247.727 kb on + strand, within GFF3753at 247.727 kb on + strand, within GFF3753at 247.727 kb on + strand, within GFF3753at 247.727 kb on + strand, within GFF3753at 247.727 kb on + strand, within GFF3753at 247.727 kb on + strand, within GFF3753at 247.727 kb on + strand, within GFF3753at 247.728 kb on - strand, within GFF3753at 247.728 kb on - strand, within GFF3753at 247.728 kb on - strand, within GFF3753at 247.728 kb on - strand, within GFF3753at 247.728 kb on - strand, within GFF3753at 247.728 kb on - strand, within GFF3753at 247.728 kb on - strand, within GFF3753at 247.728 kb on - strand, within GFF3753at 247.728 kb on - strand, within GFF3753at 247.728 kb on - strand, within GFF3753at 247.728 kb on - strand, within GFF3753at 247.728 kb on - strand, within GFF3753at 247.728 kb on - strand, within GFF3753at 247.728 kb on - strand, within GFF3753at 247.728 kb on - strand, within GFF3753at 247.728 kb on - strand, within GFF3753at 247.728 kb on - strand, within GFF3753at 247.728 kb on - strand, within GFF3753at 247.853 kb on + strandat 247.853 kb on + strandat 247.853 kb on + strandat 247.853 kb on + strandat 247.853 kb on + strandat 247.853 kb on + strandat 247.853 kb on + strandat 247.853 kb on + strandat 247.853 kb on + strandat 247.853 kb on + strandat 247.853 kb on + strandat 247.853 kb on + strandat 247.853 kb on + strandat 247.854 kb on - strandat 247.854 kb on - strandat 247.854 kb on - strandat 247.854 kb on - strandat 247.854 kb on - strandat 247.854 kb on - strandat 247.854 kb on - strandat 247.854 kb on - strandat 247.996 kb on + strandat 247.996 kb on + strandat 247.997 kb on - strandat 247.997 kb on - strandat 248.080 kb on + strand, within GFF3754at 248.080 kb on + strand, within GFF3754at 248.081 kb on - strand, within GFF3754at 248.081 kb on - strand, within GFF3754at 248.081 kb on - strand, within GFF3754at 248.081 kb on - strand, within GFF3754at 248.270 kb on - strand, within GFF3754at 248.320 kb on + strand, within GFF3754at 248.320 kb on + strand, within GFF3754at 248.320 kb on + strand, within GFF3754at 248.320 kb on + strand, within GFF3754at 248.320 kb on + strand, within GFF3754at 248.320 kb on + strand, within GFF3754at 248.320 kb on + strand, within GFF3754at 248.320 kb on + strand, within GFF3754at 248.320 kb on + strand, within GFF3754at 248.321 kb on - strand, within GFF3754at 248.321 kb on - strand, within GFF3754at 248.321 kb on - strand, within GFF3754at 248.321 kb on - strand, within GFF3754at 248.321 kb on - strand, within GFF3754at 248.321 kb on - strand, within GFF3754at 248.321 kb on - strand, within GFF3754at 248.321 kb on - strand, within GFF3754at 248.482 kb on + strand, within GFF3754at 248.482 kb on + strand, within GFF3754at 248.482 kb on + strand, within GFF3754at 248.482 kb on + strand, within GFF3754at 248.482 kb on + strand, within GFF3754at 248.482 kb on + strand, within GFF3754at 248.482 kb on + strand, within GFF3754at 248.482 kb on + strand, within GFF3754at 248.482 kb on + strand, within GFF3754at 248.482 kb on + strand, within GFF3754at 248.482 kb on + strand, within GFF3754at 248.482 kb on + strand, within GFF3754at 248.482 kb on + strand, within GFF3754at 248.482 kb on + strand, within GFF3754at 248.482 kb on + strand, within GFF3754at 248.482 kb on + strand, within GFF3754at 248.482 kb on + strand, within GFF3754at 248.482 kb on + strand, within GFF3754at 248.482 kb on + strand, within GFF3754at 248.482 kb on + strand, within GFF3754at 248.482 kb on + strand, within GFF3754at 248.482 kb on + strand, within GFF3754at 248.482 kb on + strand, within GFF3754at 248.482 kb on + strand, within GFF3754at 248.482 kb on + strand, within GFF3754at 248.482 kb on + strand, within GFF3754at 248.482 kb on + strand, within GFF3754at 248.482 kb on + strand, within GFF3754at 248.483 kb on - strand, within GFF3754at 248.483 kb on - strand, within GFF3754at 248.483 kb on - strand, within GFF3754at 248.483 kb on - strand, within GFF3754at 248.483 kb on - strand, within GFF3754at 248.483 kb on - strand, within GFF3754at 248.483 kb on - strand, within GFF3754at 248.483 kb on - strand, within GFF3754at 248.483 kb on - strand, within GFF3754at 248.483 kb on - strand, within GFF3754at 248.483 kb on - strand, within GFF3754at 248.483 kb on - strand, within GFF3754at 248.483 kb on - strand, within GFF3754at 248.483 kb on - strand, within GFF3754at 248.483 kb on - strand, within GFF3754at 248.483 kb on - strand, within GFF3754at 248.483 kb on - strand, within GFF3754at 248.483 kb on - strand, within GFF3754at 248.483 kb on - strand, within GFF3754at 248.483 kb on - strand, within GFF3754at 248.483 kb on - strand, within GFF3754at 248.542 kb on + strand, within GFF3754at 248.542 kb on + strand, within GFF3754at 248.542 kb on + strand, within GFF3754at 248.542 kb on + strand, within GFF3754at 248.542 kb on + strand, within GFF3754at 248.542 kb on + strand, within GFF3754at 248.542 kb on + strand, within GFF3754at 248.542 kb on + strand, within GFF3754at 248.542 kb on + strand, within GFF3754at 248.543 kb on - strand, within GFF3754at 248.543 kb on - strand, within GFF3754at 248.543 kb on - strand, within GFF3754at 248.543 kb on - strand, within GFF3754at 248.543 kb on - strand, within GFF3754at 248.543 kb on - strand, within GFF3754at 248.543 kb on - strand, within GFF3754at 248.543 kb on - strand, within GFF3754at 248.543 kb on - strand, within GFF3754at 248.578 kb on + strand, within GFF3754at 248.578 kb on + strand, within GFF3754at 248.579 kb on - strand, within GFF3754at 248.579 kb on - strand, within GFF3754at 248.579 kb on - strand, within GFF3754at 248.579 kb on - strand, within GFF3754at 248.579 kb on - strand, within GFF3754at 248.776 kb on + strandat 248.776 kb on + strandat 248.776 kb on + strandat 248.776 kb on + strandat 248.777 kb on - strandat 248.777 kb on - strandat 248.777 kb on - strandat 248.777 kb on - strandat 248.827 kb on + strandat 249.370 kb on + strand, within GFF3755at 249.370 kb on + strand, within GFF3755at 249.371 kb on - strand, within GFF3755at 249.371 kb on - strand, within GFF3755at 249.371 kb on - strand, within GFF3755at 249.371 kb on - strand, within GFF3755at 249.371 kb on - strand, within GFF3755at 249.371 kb on - strand, within GFF3755at 249.406 kb on + strand, within GFF3755at 249.406 kb on + strand, within GFF3755at 249.406 kb on + strand, within GFF3755at 249.406 kb on + strand, within GFF3755at 249.406 kb on + strand, within GFF3755at 249.406 kb on + strand, within GFF3755at 249.406 kb on + strand, within GFF3755at 249.406 kb on + strand, within GFF3755at 249.407 kb on - strand, within GFF3755at 249.407 kb on - strand, within GFF3755at 249.407 kb on - strand, within GFF3755at 249.407 kb on - strand, within GFF3755at 249.407 kb on - strand, within GFF3755at 249.847 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
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246,935 + GFF3753 0.11 +1.1
246,935 + GFF3753 0.11 -1.0
246,935 + GFF3753 0.11 -0.5
246,935 + GFF3753 0.11 -0.6
246,936 - GFF3753 0.11 -0.1
247,076 + GFF3753 0.25 -1.2
247,077 - GFF3753 0.25 -0.6
247,083 - GFF3753 0.25 +1.1
247,169 + GFF3753 0.34 -0.2
247,193 + GFF3753 0.36 -0.1
247,193 + GFF3753 0.36 -0.7
247,193 + GFF3753 0.36 -0.3
247,193 + GFF3753 0.36 -0.4
247,193 + GFF3753 0.36 -2.1
247,568 + GFF3753 0.73 +0.2
247,568 + GFF3753 0.73 -0.3
247,569 - GFF3753 0.73 +0.2
247,727 + GFF3753 0.89 -0.1
247,727 + GFF3753 0.89 -2.2
247,727 + GFF3753 0.89 +0.9
247,727 + GFF3753 0.89 -0.4
247,727 + GFF3753 0.89 -0.6
247,727 + GFF3753 0.89 -0.4
247,727 + GFF3753 0.89 -0.5
247,727 + GFF3753 0.89 +1.0
247,727 + GFF3753 0.89 +0.3
247,727 + GFF3753 0.89 -0.8
247,727 + GFF3753 0.89 +0.7
247,727 + GFF3753 0.89 -0.7
247,728 - GFF3753 0.89 +0.2
247,728 - GFF3753 0.89 -0.3
247,728 - GFF3753 0.89 +0.1
247,728 - GFF3753 0.89 -0.1
247,728 - GFF3753 0.89 -0.2
247,728 - GFF3753 0.89 +0.8
247,728 - GFF3753 0.89 +0.1
247,728 - GFF3753 0.89 -0.3
247,728 - GFF3753 0.89 -0.6
247,728 - GFF3753 0.89 -0.5
247,728 - GFF3753 0.89 +0.1
247,728 - GFF3753 0.89 -0.5
247,728 - GFF3753 0.89 +0.2
247,728 - GFF3753 0.89 +0.2
247,728 - GFF3753 0.89 +0.2
247,728 - GFF3753 0.89 -1.0
247,728 - GFF3753 0.89 +0.2
247,728 - GFF3753 0.89 -0.3
247,853 + +1.5
247,853 + -0.4
247,853 + +1.1
247,853 + +1.3
247,853 + -1.7
247,853 + +0.0
247,853 + -1.2
247,853 + +0.0
247,853 + +0.5
247,853 + -0.7
247,853 + +0.4
247,853 + -1.7
247,853 + +0.3
247,854 - +1.4
247,854 - -0.4
247,854 - -1.8
247,854 - -0.5
247,854 - +0.3
247,854 - +0.2
247,854 - +1.0
247,854 - +1.5
247,996 + -0.5
247,996 + -0.8
247,997 - -0.6
247,997 - -0.2
248,080 + GFF3754 0.18 +0.3
248,080 + GFF3754 0.18 +0.1
248,081 - GFF3754 0.18 +0.4
248,081 - GFF3754 0.18 +0.4
248,081 - GFF3754 0.18 -1.1
248,081 - GFF3754 0.18 -0.4
248,270 - GFF3754 0.38 -0.5
248,320 + GFF3754 0.43 +0.0
248,320 + GFF3754 0.43 -0.9
248,320 + GFF3754 0.43 -0.8
248,320 + GFF3754 0.43 +0.1
248,320 + GFF3754 0.43 -0.4
248,320 + GFF3754 0.43 -0.9
248,320 + GFF3754 0.43 -0.9
248,320 + GFF3754 0.43 +0.4
248,320 + GFF3754 0.43 +0.6
248,321 - GFF3754 0.43 +0.1
248,321 - GFF3754 0.43 +1.1
248,321 - GFF3754 0.43 +0.5
248,321 - GFF3754 0.43 -0.2
248,321 - GFF3754 0.43 -1.1
248,321 - GFF3754 0.43 -0.8
248,321 - GFF3754 0.43 -0.3
248,321 - GFF3754 0.43 -0.2
248,482 + GFF3754 0.60 -0.1
248,482 + GFF3754 0.60 +0.8
248,482 + GFF3754 0.60 +0.8
248,482 + GFF3754 0.60 +0.6
248,482 + GFF3754 0.60 -0.5
248,482 + GFF3754 0.60 +0.0
248,482 + GFF3754 0.60 -0.5
248,482 + GFF3754 0.60 -2.0
248,482 + GFF3754 0.60 -0.1
248,482 + GFF3754 0.60 -0.2
248,482 + GFF3754 0.60 +0.3
248,482 + GFF3754 0.60 -0.1
248,482 + GFF3754 0.60 +0.5
248,482 + GFF3754 0.60 -0.4
248,482 + GFF3754 0.60 -0.5
248,482 + GFF3754 0.60 +0.2
248,482 + GFF3754 0.60 -0.1
248,482 + GFF3754 0.60 -0.5
248,482 + GFF3754 0.60 +0.2
248,482 + GFF3754 0.60 +0.0
248,482 + GFF3754 0.60 +1.0
248,482 + GFF3754 0.60 +1.4
248,482 + GFF3754 0.60 +0.9
248,482 + GFF3754 0.60 -0.8
248,482 + GFF3754 0.60 +0.4
248,482 + GFF3754 0.60 -0.1
248,482 + GFF3754 0.60 -0.1
248,482 + GFF3754 0.60 +0.0
248,483 - GFF3754 0.61 -1.1
248,483 - GFF3754 0.61 -0.5
248,483 - GFF3754 0.61 -0.6
248,483 - GFF3754 0.61 +0.0
248,483 - GFF3754 0.61 -0.0
248,483 - GFF3754 0.61 +0.0
248,483 - GFF3754 0.61 -1.3
248,483 - GFF3754 0.61 +0.8
248,483 - GFF3754 0.61 -0.8
248,483 - GFF3754 0.61 +0.4
248,483 - GFF3754 0.61 -0.6
248,483 - GFF3754 0.61 +0.3
248,483 - GFF3754 0.61 -0.1
248,483 - GFF3754 0.61 -0.8
248,483 - GFF3754 0.61 -1.4
248,483 - GFF3754 0.61 +0.8
248,483 - GFF3754 0.61 -0.9
248,483 - GFF3754 0.61 +0.2
248,483 - GFF3754 0.61 -1.5
248,483 - GFF3754 0.61 +0.8
248,483 - GFF3754 0.61 -1.3
248,542 + GFF3754 0.67 -0.8
248,542 + GFF3754 0.67 -1.1
248,542 + GFF3754 0.67 +0.3
248,542 + GFF3754 0.67 +0.4
248,542 + GFF3754 0.67 -0.1
248,542 + GFF3754 0.67 -1.6
248,542 + GFF3754 0.67 +0.0
248,542 + GFF3754 0.67 +0.4
248,542 + GFF3754 0.67 -0.2
248,543 - GFF3754 0.67 +0.8
248,543 - GFF3754 0.67 +0.5
248,543 - GFF3754 0.67 +1.0
248,543 - GFF3754 0.67 -0.1
248,543 - GFF3754 0.67 -0.0
248,543 - GFF3754 0.67 -0.7
248,543 - GFF3754 0.67 -2.1
248,543 - GFF3754 0.67 -0.5
248,543 - GFF3754 0.67 -0.1
248,578 + GFF3754 0.71 -1.1
248,578 + GFF3754 0.71 +0.1
248,579 - GFF3754 0.71 -0.8
248,579 - GFF3754 0.71 +0.1
248,579 - GFF3754 0.71 -0.0
248,579 - GFF3754 0.71 -2.3
248,579 - GFF3754 0.71 -0.7
248,776 + -0.1
248,776 + -0.2
248,776 + -0.0
248,776 + -0.0
248,777 - -0.0
248,777 - +0.2
248,777 - -1.7
248,777 - -0.2
248,827 + +0.8
249,370 + GFF3755 0.39 +1.8
249,370 + GFF3755 0.39 -0.1
249,371 - GFF3755 0.39 -0.2
249,371 - GFF3755 0.39 -0.3
249,371 - GFF3755 0.39 -0.6
249,371 - GFF3755 0.39 +1.8
249,371 - GFF3755 0.39 -0.4
249,371 - GFF3755 0.39 +0.4
249,406 + GFF3755 0.44 -0.6
249,406 + GFF3755 0.44 +0.4
249,406 + GFF3755 0.44 +0.2
249,406 + GFF3755 0.44 -0.1
249,406 + GFF3755 0.44 -1.0
249,406 + GFF3755 0.44 +0.5
249,406 + GFF3755 0.44 +0.2
249,406 + GFF3755 0.44 -1.2
249,407 - GFF3755 0.44 +0.4
249,407 - GFF3755 0.44 -0.0
249,407 - GFF3755 0.44 -1.1
249,407 - GFF3755 0.44 -0.2
249,407 - GFF3755 0.44 -0.1
249,847 + -0.0

Or see this region's nucleotide sequence