Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3609 and GFF3610 are separated by 268 nucleotides GFF3610 and GFF3611 are separated by 8 nucleotides
GFF3609 - ABC transporter, ATP-binding protein 1 (cluster 4, leucine/isoleucine/valine/benzoate), at 122,507 to 123,328
GFF3609
GFF3610 - ABC transporter, ATP-binding protein 2 (cluster 4, leucine/isoleucine/valine/benzoate), at 123,597 to 124,370
GFF3610
GFF3611 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 124,379 to 126,235
GFF3611
Position (kb) 123
124
125 Strain fitness (log2 ratio) -1
0
1
2
3 at 122.675 kb on + strand, within GFF3609 at 122.676 kb on - strand, within GFF3609 at 122.993 kb on + strand, within GFF3609 at 122.994 kb on - strand, within GFF3609 at 123.222 kb on + strand, within GFF3609 at 123.223 kb on - strand, within GFF3609 at 123.223 kb on - strand, within GFF3609 at 123.223 kb on - strand, within GFF3609 at 123.639 kb on + strand at 123.640 kb on - strand at 123.640 kb on - strand at 123.640 kb on - strand at 123.680 kb on - strand, within GFF3610 at 123.703 kb on + strand, within GFF3610 at 123.704 kb on - strand, within GFF3610 at 123.822 kb on + strand, within GFF3610 at 123.823 kb on - strand, within GFF3610 at 123.912 kb on + strand, within GFF3610 at 123.912 kb on + strand, within GFF3610 at 123.913 kb on - strand, within GFF3610 at 123.960 kb on + strand, within GFF3610 at 123.960 kb on + strand, within GFF3610 at 123.961 kb on - strand, within GFF3610 at 123.966 kb on + strand, within GFF3610 at 123.966 kb on + strand, within GFF3610 at 123.966 kb on + strand, within GFF3610 at 123.966 kb on + strand, within GFF3610 at 123.966 kb on + strand, within GFF3610 at 123.967 kb on - strand, within GFF3610 at 123.967 kb on - strand, within GFF3610 at 124.224 kb on + strand, within GFF3610 at 124.224 kb on + strand, within GFF3610 at 124.224 kb on + strand, within GFF3610 at 124.224 kb on + strand, within GFF3610 at 124.225 kb on - strand, within GFF3610 at 124.225 kb on - strand, within GFF3610 at 124.225 kb on - strand, within GFF3610 at 124.225 kb on - strand, within GFF3610 at 124.369 kb on - strand at 124.369 kb on - strand at 124.567 kb on - strand, within GFF3611 at 124.694 kb on + strand, within GFF3611 at 124.695 kb on - strand, within GFF3611 at 124.724 kb on + strand, within GFF3611 at 124.724 kb on + strand, within GFF3611 at 124.724 kb on + strand, within GFF3611 at 124.724 kb on + strand, within GFF3611 at 124.725 kb on - strand, within GFF3611 at 124.725 kb on - strand, within GFF3611 at 124.988 kb on + strand, within GFF3611 at 124.988 kb on + strand, within GFF3611 at 124.989 kb on - strand, within GFF3611 at 125.048 kb on + strand, within GFF3611 at 125.049 kb on - strand, within GFF3611 at 125.049 kb on - strand, within GFF3611 at 125.064 kb on - strand, within GFF3611 at 125.150 kb on + strand, within GFF3611 at 125.162 kb on + strand, within GFF3611 at 125.162 kb on + strand, within GFF3611 at 125.162 kb on + strand, within GFF3611 at 125.162 kb on + strand, within GFF3611 at 125.163 kb on - strand, within GFF3611 at 125.163 kb on - strand, within GFF3611 at 125.163 kb on - strand, within GFF3611 at 125.163 kb on - strand, within GFF3611 at 125.273 kb on + strand, within GFF3611 at 125.274 kb on - strand, within GFF3611 at 125.327 kb on + strand, within GFF3611 at 125.328 kb on - strand, within GFF3611 at 125.328 kb on - strand, within GFF3611 at 125.328 kb on - strand, within GFF3611
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL remove 122,675 + GFF3609 0.20 -0.1 122,676 - GFF3609 0.21 +0.2 122,993 + GFF3609 0.59 -0.0 122,994 - GFF3609 0.59 -0.1 123,222 + GFF3609 0.87 -1.5 123,223 - GFF3609 0.87 -0.8 123,223 - GFF3609 0.87 +0.0 123,223 - GFF3609 0.87 -1.7 123,639 + -0.3 123,640 - -1.0 123,640 - +0.6 123,640 - +0.1 123,680 - GFF3610 0.11 +0.1 123,703 + GFF3610 0.14 +0.4 123,704 - GFF3610 0.14 +0.9 123,822 + GFF3610 0.29 -1.4 123,823 - GFF3610 0.29 +0.1 123,912 + GFF3610 0.41 +0.5 123,912 + GFF3610 0.41 -0.8 123,913 - GFF3610 0.41 +0.1 123,960 + GFF3610 0.47 -0.7 123,960 + GFF3610 0.47 +0.6 123,961 - GFF3610 0.47 +0.6 123,966 + GFF3610 0.48 -0.0 123,966 + GFF3610 0.48 -0.0 123,966 + GFF3610 0.48 -0.2 123,966 + GFF3610 0.48 -1.7 123,966 + GFF3610 0.48 +0.2 123,967 - GFF3610 0.48 +1.0 123,967 - GFF3610 0.48 -0.4 124,224 + GFF3610 0.81 -0.3 124,224 + GFF3610 0.81 -0.3 124,224 + GFF3610 0.81 -0.0 124,224 + GFF3610 0.81 -0.5 124,225 - GFF3610 0.81 +1.0 124,225 - GFF3610 0.81 +0.5 124,225 - GFF3610 0.81 +1.8 124,225 - GFF3610 0.81 -0.1 124,369 - -0.3 124,369 - +0.6 124,567 - GFF3611 0.10 -0.4 124,694 + GFF3611 0.17 -0.3 124,695 - GFF3611 0.17 +0.1 124,724 + GFF3611 0.19 +0.8 124,724 + GFF3611 0.19 +0.1 124,724 + GFF3611 0.19 -0.3 124,724 + GFF3611 0.19 -0.2 124,725 - GFF3611 0.19 -0.5 124,725 - GFF3611 0.19 +2.8 124,988 + GFF3611 0.33 -0.4 124,988 + GFF3611 0.33 -0.4 124,989 - GFF3611 0.33 -1.2 125,048 + GFF3611 0.36 +0.5 125,049 - GFF3611 0.36 -0.0 125,049 - GFF3611 0.36 -0.1 125,064 - GFF3611 0.37 +0.0 125,150 + GFF3611 0.42 -0.1 125,162 + GFF3611 0.42 -0.5 125,162 + GFF3611 0.42 -0.5 125,162 + GFF3611 0.42 +0.3 125,162 + GFF3611 0.42 -1.3 125,163 - GFF3611 0.42 +0.1 125,163 - GFF3611 0.42 -0.3 125,163 - GFF3611 0.42 -0.7 125,163 - GFF3611 0.42 -0.9 125,273 + GFF3611 0.48 -0.1 125,274 - GFF3611 0.48 -0.3 125,327 + GFF3611 0.51 -1.7 125,328 - GFF3611 0.51 -1.0 125,328 - GFF3611 0.51 +0.2 125,328 - GFF3611 0.51 -0.7
Or see this region's nucleotide sequence