Strain Fitness in Variovorax sp. SCN45 around GFF3596

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
107,976	+				-0.5
108,158	+		GFF3595	0.20	+0.1
108,158	+		GFF3595	0.20	-0.4
108,158	+		GFF3595	0.20	+0.2
108,159	-		GFF3595	0.21	-0.4
108,159	-		GFF3595	0.21	-0.5
108,204	+		GFF3595	0.27	-0.1
108,204	+		GFF3595	0.27	-0.2
108,204	+		GFF3595	0.27	-3.5
108,204	+		GFF3595	0.27	+0.0
108,204	+		GFF3595	0.27	+1.0
108,205	-		GFF3595	0.27	-1.4
108,205	-		GFF3595	0.27	-0.1
108,205	-		GFF3595	0.27	-1.5
108,219	-		GFF3595	0.29	-0.6
108,219	-		GFF3595	0.29	+0.4
108,219	-		GFF3595	0.29	-0.4
108,219	-		GFF3595	0.29	-0.1
108,262	+		GFF3595	0.35	-0.4
108,262	+		GFF3595	0.35	+0.7
108,262	+		GFF3595	0.35	-0.6
108,262	+		GFF3595	0.35	+0.2
108,263	-		GFF3595	0.35	-1.0
108,263	-		GFF3595	0.35	+0.8
108,263	-		GFF3595	0.35	-0.2
108,263	-		GFF3595	0.35	-0.2
108,314	+		GFF3595	0.43	-1.5
108,314	+		GFF3595	0.43	-0.2
108,314	+		GFF3595	0.43	+0.8
108,314	+		GFF3595	0.43	-0.4
108,314	+		GFF3595	0.43	-0.9
108,314	+		GFF3595	0.43	-0.3
108,314	+		GFF3595	0.43	-0.5
108,314	+		GFF3595	0.43	-1.1
108,314	+		GFF3595	0.43	-1.0
108,314	+		GFF3595	0.43	-0.6
108,314	+		GFF3595	0.43	+0.2
108,314	+		GFF3595	0.43	+0.9
108,314	+		GFF3595	0.43	+0.2
108,314	+		GFF3595	0.43	+0.0
108,315	-		GFF3595	0.43	-0.3
108,315	-		GFF3595	0.43	+0.8
108,315	-		GFF3595	0.43	+0.1
108,315	-		GFF3595	0.43	+0.5
108,315	-		GFF3595	0.43	+0.7
108,315	-		GFF3595	0.43	+0.7
108,315	-		GFF3595	0.43	-0.8
108,315	-		GFF3595	0.43	+0.0
108,315	-		GFF3595	0.43	+0.2
108,315	-		GFF3595	0.43	+0.3
108,315	-		GFF3595	0.43	-1.3
108,315	-		GFF3595	0.43	-0.2
108,331	-		GFF3595	0.45	-0.5
108,334	+		GFF3595	0.45	-1.0
108,334	+		GFF3595	0.45	-0.2
108,334	+		GFF3595	0.45	-0.9
108,334	+		GFF3595	0.45	+0.1
108,334	+		GFF3595	0.45	+0.2
108,334	+		GFF3595	0.45	+0.3
108,334	+		GFF3595	0.45	+1.3
108,334	+		GFF3595	0.45	-0.4
108,334	+		GFF3595	0.45	+0.4
108,334	+		GFF3595	0.45	-0.2
108,334	+		GFF3595	0.45	-0.1
108,334	+		GFF3595	0.45	+0.8
108,335	-		GFF3595	0.45	-0.2
108,335	-		GFF3595	0.45	-0.2
108,335	-		GFF3595	0.45	-0.4
108,335	-		GFF3595	0.45	+0.1
108,335	-		GFF3595	0.45	-0.6
108,373	+		GFF3595	0.51	+0.4
108,373	+		GFF3595	0.51	+1.5
108,373	+		GFF3595	0.51	+0.5
108,373	+		GFF3595	0.51	-0.1
108,373	+		GFF3595	0.51	+0.2
108,373	+		GFF3595	0.51	+0.4
108,373	+		GFF3595	0.51	-0.5
108,373	+		GFF3595	0.51	-1.0
108,373	+		GFF3595	0.51	-0.3
108,374	-		GFF3595	0.51	-0.4
108,374	-		GFF3595	0.51	+0.8
108,374	-		GFF3595	0.51	+0.1
108,374	-		GFF3595	0.51	-2.3
108,374	-		GFF3595	0.51	-1.8
108,374	-		GFF3595	0.51	-0.0
108,374	-		GFF3595	0.51	+0.0
108,472	+		GFF3595	0.65	-0.2
108,473	-		GFF3595	0.65	+0.4
108,540	-		GFF3595	0.74	-0.1
108,540	-		GFF3595	0.74	+0.3
108,560	-		GFF3595	0.77	-0.1
108,596	+		GFF3595	0.82	-0.4
108,609	-		GFF3595	0.84	-0.7
108,609	-		GFF3595	0.84	+0.6
108,638	-		GFF3595	0.88	-0.4
108,736	+				+1.2
108,736	+				+0.1
108,777	+				+1.1
108,777	+				-0.2
108,778	-				+0.2
108,778	-				-0.5
108,784	+				-0.3
108,784	+				-0.3
108,785	-				+1.0
108,785	-				-0.3
108,820	+				+0.5
108,820	+				+0.9
108,820	+				+0.1
108,821	-				+0.2
108,822	+				-0.2
108,823	-				+1.6
108,823	-				-0.4
108,880	+				-0.3
108,880	+				+1.5
108,880	+				-0.1
108,880	+				-0.4
108,881	-				+0.0
108,881	-				-2.2
108,881	-				-0.2
108,881	-				-1.6
108,881	-				-0.9
108,881	-				-0.6
108,908	-				-1.0
108,934	+				-0.9
108,934	+				-0.2
108,934	+				-0.7
108,934	+				-0.8
108,934	+				-0.5
108,934	+				+0.1
108,935	-				+0.6
108,935	-				-0.1
108,940	+				-0.1
108,940	+				+0.6
108,940	+				-0.2
108,940	+				-0.5
108,940	+				-1.4
108,940	+				+0.3
108,940	+				-0.9
108,941	-				-0.7
108,941	-				-0.0
108,982	+				-0.5
108,982	+				+0.0
108,982	+				+0.2
108,982	+				-0.5
108,982	+				+0.6
108,982	+				+0.2
108,982	+				-1.5
108,982	+				+0.8
108,982	+				-0.3
108,982	+				-0.3
108,982	+				+1.3
108,982	+				-0.3
108,982	+				-0.5
108,982	+				-1.3
108,982	+				+0.2
108,982	+				+0.5
108,982	+				+0.2
108,982	+				+0.0
108,982	+				+0.8
108,982	+				-0.6
108,982	+				-0.1
108,982	+				+0.1
108,982	+				-0.6
108,982	+				+0.6
108,982	+				+1.8
108,982	+				+0.1
108,982	+				-0.4
108,982	+				-1.0
108,982	+				+1.4
108,982	+				-0.2
108,982	+				-0.7
108,982	+				+1.3
108,982	+				+0.1
108,982	+				-0.7
108,983	-				-0.4
108,983	-				+1.4
108,983	-				-0.1
108,983	-				+0.0
108,983	-				-0.7
108,983	-				+0.8
108,983	-				-0.0
108,983	-				-0.3
108,983	-				-0.0
108,983	-				+1.8
108,983	-				-3.3
108,983	-				-0.7
108,983	-				+0.5
108,983	-				-1.0
108,983	-				-0.3
108,983	-				+0.2
108,983	-				+0.6
108,983	-				-0.5
108,983	-				+0.5
108,983	-				+2.8
108,983	-				-0.4
108,983	-				-0.4
108,983	-				+0.3
108,983	-				+0.8
108,983	-				-0.4
108,983	-				-0.2
109,081	+				-0.2
109,081	+				+0.1
109,081	+				-0.4
109,081	+				-0.1
109,081	+				-0.7
109,081	+				-0.1
109,081	+				+0.3
109,081	+				-0.2
109,081	+				-0.8
109,082	-				+1.5
109,082	-				+0.4
109,082	-				-0.3
109,082	-				-0.0
109,082	-				+0.4
109,082	-				-0.3
109,082	-				+0.5
109,082	-				-0.7
109,082	-				+0.9
109,082	-				+0.0
109,082	-				+0.0
109,624	+		GFF3596	0.37	-0.1
109,624	+		GFF3596	0.37	-0.0
109,624	+		GFF3596	0.37	-1.4
109,624	+		GFF3596	0.37	-1.6
109,624	+		GFF3596	0.37	-0.6
109,624	+		GFF3596	0.37	-1.1
109,624	+		GFF3596	0.37	-0.4
109,624	+		GFF3596	0.37	-0.6
109,624	+		GFF3596	0.37	-0.7
109,624	+		GFF3596	0.37	-0.2
109,624	+		GFF3596	0.37	-0.1
109,625	-		GFF3596	0.37	+0.2
109,625	-		GFF3596	0.37	-0.6
109,625	-		GFF3596	0.37	-2.7
109,625	-		GFF3596	0.37	-0.2
109,625	-		GFF3596	0.37	+0.7
109,625	-		GFF3596	0.37	-0.0
109,625	-		GFF3596	0.37	-0.1
109,625	-		GFF3596	0.37	+2.4
109,625	-		GFF3596	0.37	-0.9
109,625	-		GFF3596	0.37	-0.2
109,625	-		GFF3596	0.37	+0.2
109,874	-		GFF3596	0.50	-0.9
109,909	+		GFF3596	0.52	+0.0
109,909	+		GFF3596	0.52	-0.1
109,909	+		GFF3596	0.52	+0.5
109,909	+		GFF3596	0.52	-0.3
109,909	+		GFF3596	0.52	-0.1
109,909	+		GFF3596	0.52	+0.9
109,909	+		GFF3596	0.52	+0.2
109,910	-		GFF3596	0.52	+0.3
109,910	-		GFF3596	0.52	-0.8
109,910	-		GFF3596	0.52	-0.6
109,910	-		GFF3596	0.52	+0.1
109,910	-		GFF3596	0.52	+0.6
110,146	+		GFF3596	0.64	+0.1
110,146	+		GFF3596	0.64	+0.2
110,146	+		GFF3596	0.64	+0.5
110,146	+		GFF3596	0.64	-1.7
110,146	+		GFF3596	0.64	-0.2
110,146	+		GFF3596	0.64	+0.9
110,146	+		GFF3596	0.64	+1.2
110,146	+		GFF3596	0.64	+1.0
110,146	+		GFF3596	0.64	+1.8
110,147	-		GFF3596	0.64	-0.2
110,147	-		GFF3596	0.64	-0.7
110,147	-		GFF3596	0.64	-0.4
110,147	-		GFF3596	0.64	+0.1
110,147	-		GFF3596	0.64	+0.6
110,155	+		GFF3596	0.65	+2.8
110,155	+		GFF3596	0.65	+0.1
110,155	+		GFF3596	0.65	-0.6
110,155	+		GFF3596	0.65	-0.1
110,156	-		GFF3596	0.65	+0.0
110,156	-		GFF3596	0.65	+0.4
110,156	-		GFF3596	0.65	+0.6
110,197	+		GFF3596	0.67	+0.1
110,197	+		GFF3596	0.67	-0.2
110,197	+		GFF3596	0.67	+0.2
110,197	+		GFF3596	0.67	+0.1
110,198	-		GFF3596	0.67	-0.1
110,198	-		GFF3596	0.67	-0.1
110,198	-		GFF3596	0.67	+0.2
110,198	-		GFF3596	0.67	+1.8
110,198	-		GFF3596	0.67	-0.8
110,234	-		GFF3596	0.69	-0.2
110,317	+		GFF3596	0.73	-0.7
110,317	+		GFF3596	0.73	+2.9
110,318	-		GFF3596	0.73	-0.2
110,510	-		GFF3596	0.84	-0.0
110,510	-		GFF3596	0.84	+0.2
110,510	-		GFF3596	0.84	+0.5
110,614	+		GFF3596	0.89	-0.5
111,036	+		GFF3597	0.35	-1.4
111,036	+		GFF3597	0.35	+0.6
111,036	+		GFF3597	0.35	+0.2
111,036	+		GFF3597	0.35	-2.0
111,036	+		GFF3597	0.35	-0.1
111,036	+		GFF3597	0.35	+0.9
111,037	-		GFF3597	0.35	+0.2
111,037	-		GFF3597	0.35	-0.5
111,037	-		GFF3597	0.35	-0.2
111,037	-		GFF3597	0.35	+0.0
111,037	-		GFF3597	0.35	-0.4
111,048	+		GFF3597	0.37	+0.3
111,048	+		GFF3597	0.37	+0.1
111,049	-		GFF3597	0.37	+0.5
111,049	-		GFF3597	0.37	-1.0
111,049	-		GFF3597	0.37	+0.4
111,108	+		GFF3597	0.46	-0.2
111,108	+		GFF3597	0.46	+0.2
111,109	-		GFF3597	0.47	-0.2
111,109	-		GFF3597	0.47	+0.8
111,109	-		GFF3597	0.47	+0.4
111,162	+		GFF3597	0.55	+0.1
111,162	+		GFF3597	0.55	-0.8
111,162	+		GFF3597	0.55	+0.1
111,162	+		GFF3597	0.55	-0.7
111,162	+		GFF3597	0.55	-0.2
111,162	+		GFF3597	0.55	+0.5
111,162	+		GFF3597	0.55	+0.1
111,162	+		GFF3597	0.55	+0.8
111,163	-		GFF3597	0.55	+0.0
111,163	-		GFF3597	0.55	+0.2
111,163	-		GFF3597	0.55	+0.6
111,163	-		GFF3597	0.55	+0.6
111,163	-		GFF3597	0.55	+0.5
111,163	-		GFF3597	0.55	-1.0
111,163	-		GFF3597	0.55	-0.5
111,163	-		GFF3597	0.55	+0.6
111,163	-		GFF3597	0.55	-0.5
111,163	-		GFF3597	0.55	+1.6
111,210	+		GFF3597	0.63	-0.8
111,211	-		GFF3597	0.63	+0.5
111,253	-		GFF3597	0.69	-0.8
111,253	-		GFF3597	0.69	-0.9
111,253	-		GFF3597	0.69	-0.1
111,282	+		GFF3597	0.74	-1.0
111,283	-		GFF3597	0.74	-0.0
111,334	-		GFF3597	0.82	+0.5
111,566	+				+1.2
111,566	+				-1.7
111,566	+				+0.0
111,575	+				+0.1
111,575	+				-0.2
111,575	+				-0.6
111,575	+				+0.1
111,575	+				+0.6
111,575	+				+0.3
111,575	+				-0.5
111,575	+				-0.3
111,575	+				+0.4
111,575	+				-1.5
111,576	-				+1.0
111,576	-				+0.2
111,599	+				-0.8
111,746	+		GFF3598	0.19	+0.1
111,746	+		GFF3598	0.19	-0.4
111,746	+		GFF3598	0.19	-1.2
111,747	-		GFF3598	0.19	-0.0
111,747	-		GFF3598	0.19	-0.5
111,779	+		GFF3598	0.22	-0.2
111,779	+		GFF3598	0.22	+0.4
111,779	+		GFF3598	0.22	-1.0
111,779	+		GFF3598	0.22	-0.1
111,779	+		GFF3598	0.22	+0.2
111,779	+		GFF3598	0.22	+0.4
111,779	+		GFF3598	0.22	+0.8
111,779	+		GFF3598	0.22	-0.2
111,779	+		GFF3598	0.22	-0.1
111,780	-		GFF3598	0.22	-2.5
111,780	-		GFF3598	0.22	+0.3
111,780	-		GFF3598	0.22	-0.6