Strain Fitness in Variovorax sp. SCN45 around GFF3586

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3584 and GFF3585 overlap by 23 nucleotidesGFF3585 and GFF3586 are separated by 23 nucleotidesGFF3586 and GFF3587 are separated by 22 nucleotides GFF3584 - hypothetical protein, at 95,813 to 96,334 GFF3584 GFF3585 - Sulfate transport system permease protein CysT, at 96,312 to 97,133 GFF3585 GFF3586 - ABC-type Fe3+ transport system, periplasmic component, at 97,157 to 98,236 GFF3586 GFF3587 - KEGG: putative spermidine/putrescine transport system ATP-binding protein, at 98,259 to 99,287 GFF3587 Position (kb) 97 98 99Strain fitness (log2 ratio) -2 -1 0 1at 96.204 kb on + strand, within GFF3584at 96.205 kb on - strand, within GFF3584at 96.354 kb on - strandat 96.514 kb on + strand, within GFF3585at 96.514 kb on + strand, within GFF3585at 96.514 kb on + strand, within GFF3585at 96.515 kb on - strand, within GFF3585at 96.515 kb on - strand, within GFF3585at 96.515 kb on - strand, within GFF3585at 96.515 kb on - strand, within GFF3585at 96.700 kb on + strand, within GFF3585at 96.700 kb on + strand, within GFF3585at 96.701 kb on - strand, within GFF3585at 96.703 kb on + strand, within GFF3585at 96.703 kb on + strand, within GFF3585at 96.703 kb on + strand, within GFF3585at 96.703 kb on + strand, within GFF3585at 96.703 kb on + strand, within GFF3585at 96.703 kb on + strand, within GFF3585at 96.703 kb on + strand, within GFF3585at 96.703 kb on + strand, within GFF3585at 96.704 kb on - strand, within GFF3585at 96.704 kb on - strand, within GFF3585at 96.704 kb on - strand, within GFF3585at 96.704 kb on - strand, within GFF3585at 96.704 kb on - strand, within GFF3585at 96.704 kb on - strand, within GFF3585at 96.704 kb on - strand, within GFF3585at 96.704 kb on - strand, within GFF3585at 96.704 kb on - strand, within GFF3585at 96.704 kb on - strand, within GFF3585at 96.709 kb on + strand, within GFF3585at 96.710 kb on - strand, within GFF3585at 96.710 kb on - strand, within GFF3585at 96.736 kb on + strand, within GFF3585at 96.736 kb on + strand, within GFF3585at 96.736 kb on + strand, within GFF3585at 96.737 kb on - strand, within GFF3585at 96.737 kb on - strand, within GFF3585at 96.737 kb on - strand, within GFF3585at 96.737 kb on - strand, within GFF3585at 97.158 kb on + strandat 97.158 kb on + strandat 97.159 kb on - strandat 97.413 kb on + strand, within GFF3586at 97.507 kb on - strand, within GFF3586at 97.548 kb on + strand, within GFF3586at 97.605 kb on + strand, within GFF3586at 97.606 kb on - strand, within GFF3586at 97.650 kb on + strand, within GFF3586at 97.651 kb on - strand, within GFF3586at 97.704 kb on + strand, within GFF3586at 97.704 kb on + strand, within GFF3586at 97.705 kb on - strand, within GFF3586at 97.705 kb on - strand, within GFF3586at 97.926 kb on + strand, within GFF3586at 97.926 kb on + strand, within GFF3586at 97.926 kb on + strand, within GFF3586at 97.926 kb on + strand, within GFF3586at 97.926 kb on + strand, within GFF3586at 97.927 kb on - strand, within GFF3586at 97.927 kb on - strand, within GFF3586at 97.927 kb on - strand, within GFF3586at 97.929 kb on + strand, within GFF3586at 97.929 kb on + strand, within GFF3586at 97.929 kb on + strand, within GFF3586at 97.930 kb on - strand, within GFF3586at 97.930 kb on - strand, within GFF3586at 98.004 kb on + strand, within GFF3586at 98.005 kb on - strand, within GFF3586at 98.025 kb on + strand, within GFF3586at 98.026 kb on - strand, within GFF3586at 98.121 kb on + strand, within GFF3586at 98.143 kb on - strandat 98.143 kb on - strandat 98.389 kb on + strand, within GFF3587at 98.390 kb on - strand, within GFF3587at 98.390 kb on - strand, within GFF3587at 98.623 kb on + strand, within GFF3587at 98.623 kb on + strand, within GFF3587at 98.623 kb on + strand, within GFF3587at 98.623 kb on + strand, within GFF3587at 98.624 kb on - strand, within GFF3587at 98.624 kb on - strand, within GFF3587at 98.751 kb on + strand, within GFF3587at 98.751 kb on + strand, within GFF3587at 98.751 kb on + strand, within GFF3587at 98.752 kb on - strand, within GFF3587at 98.752 kb on - strand, within GFF3587at 98.752 kb on - strand, within GFF3587at 98.995 kb on + strand, within GFF3587at 98.995 kb on + strand, within GFF3587at 98.995 kb on + strand, within GFF3587at 98.995 kb on + strand, within GFF3587at 98.996 kb on - strand, within GFF3587at 98.996 kb on - strand, within GFF3587at 99.037 kb on + strand, within GFF3587at 99.037 kb on + strand, within GFF3587at 99.037 kb on + strand, within GFF3587at 99.038 kb on - strand, within GFF3587at 99.038 kb on - strand, within GFF3587

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
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96,204 + GFF3584 0.75 +0.5
96,205 - GFF3584 0.75 -1.2
96,354 - -1.9
96,514 + GFF3585 0.25 +0.4
96,514 + GFF3585 0.25 -0.3
96,514 + GFF3585 0.25 -0.4
96,515 - GFF3585 0.25 +0.3
96,515 - GFF3585 0.25 -0.1
96,515 - GFF3585 0.25 -1.7
96,515 - GFF3585 0.25 -0.1
96,700 + GFF3585 0.47 -1.3
96,700 + GFF3585 0.47 -0.4
96,701 - GFF3585 0.47 +0.2
96,703 + GFF3585 0.48 +0.5
96,703 + GFF3585 0.48 +0.4
96,703 + GFF3585 0.48 -0.1
96,703 + GFF3585 0.48 -0.0
96,703 + GFF3585 0.48 -0.1
96,703 + GFF3585 0.48 -0.7
96,703 + GFF3585 0.48 +1.0
96,703 + GFF3585 0.48 +0.1
96,704 - GFF3585 0.48 -0.4
96,704 - GFF3585 0.48 -0.7
96,704 - GFF3585 0.48 -0.2
96,704 - GFF3585 0.48 -0.2
96,704 - GFF3585 0.48 -0.1
96,704 - GFF3585 0.48 -0.6
96,704 - GFF3585 0.48 -0.4
96,704 - GFF3585 0.48 -0.2
96,704 - GFF3585 0.48 +0.8
96,704 - GFF3585 0.48 +0.2
96,709 + GFF3585 0.48 -1.0
96,710 - GFF3585 0.48 -1.0
96,710 - GFF3585 0.48 +0.6
96,736 + GFF3585 0.52 -0.1
96,736 + GFF3585 0.52 -0.5
96,736 + GFF3585 0.52 -1.3
96,737 - GFF3585 0.52 -0.5
96,737 - GFF3585 0.52 -0.4
96,737 - GFF3585 0.52 +1.1
96,737 - GFF3585 0.52 -0.5
97,158 + +0.1
97,158 + -0.2
97,159 - -0.8
97,413 + GFF3586 0.24 -0.3
97,507 - GFF3586 0.32 +0.0
97,548 + GFF3586 0.36 -0.2
97,605 + GFF3586 0.41 -1.5
97,606 - GFF3586 0.42 +0.6
97,650 + GFF3586 0.46 -0.3
97,651 - GFF3586 0.46 -0.6
97,704 + GFF3586 0.51 -0.4
97,704 + GFF3586 0.51 -1.4
97,705 - GFF3586 0.51 -0.5
97,705 - GFF3586 0.51 +0.8
97,926 + GFF3586 0.71 -0.2
97,926 + GFF3586 0.71 -0.6
97,926 + GFF3586 0.71 -0.1
97,926 + GFF3586 0.71 -0.3
97,926 + GFF3586 0.71 -0.0
97,927 - GFF3586 0.71 -0.7
97,927 - GFF3586 0.71 -0.5
97,927 - GFF3586 0.71 -1.0
97,929 + GFF3586 0.71 -0.6
97,929 + GFF3586 0.71 +0.6
97,929 + GFF3586 0.71 -1.4
97,930 - GFF3586 0.72 -0.7
97,930 - GFF3586 0.72 -2.1
98,004 + GFF3586 0.78 -1.1
98,005 - GFF3586 0.79 -1.0
98,025 + GFF3586 0.80 -0.2
98,026 - GFF3586 0.80 -0.1
98,121 + GFF3586 0.89 +0.5
98,143 - -0.0
98,143 - -1.4
98,389 + GFF3587 0.13 +0.2
98,390 - GFF3587 0.13 +0.4
98,390 - GFF3587 0.13 +0.7
98,623 + GFF3587 0.35 -0.4
98,623 + GFF3587 0.35 -0.1
98,623 + GFF3587 0.35 +0.8
98,623 + GFF3587 0.35 -0.5
98,624 - GFF3587 0.35 -0.2
98,624 - GFF3587 0.35 -2.1
98,751 + GFF3587 0.48 -1.2
98,751 + GFF3587 0.48 -0.1
98,751 + GFF3587 0.48 +0.8
98,752 - GFF3587 0.48 +1.2
98,752 - GFF3587 0.48 -0.7
98,752 - GFF3587 0.48 -0.5
98,995 + GFF3587 0.72 +0.5
98,995 + GFF3587 0.72 +1.5
98,995 + GFF3587 0.72 -1.2
98,995 + GFF3587 0.72 +0.4
98,996 - GFF3587 0.72 -0.4
98,996 - GFF3587 0.72 -0.9
99,037 + GFF3587 0.76 -2.0
99,037 + GFF3587 0.76 -0.3
99,037 + GFF3587 0.76 +0.2
99,038 - GFF3587 0.76 +0.0
99,038 - GFF3587 0.76 +0.5

Or see this region's nucleotide sequence