Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3216 and GFF3217 are separated by 6 nucleotides GFF3217 and GFF3218 are separated by 2 nucleotides GFF3218 and GFF3219 are separated by 13 nucleotides GFF3219 and GFF3220 are separated by 24 nucleotides
GFF3216 - hypothetical protein, at 36,587 to 37,069
GFF3216
GFF3217 - hypothetical protein, at 37,076 to 37,687
GFF3217
GFF3218 - Phage tail fiber, at 37,690 to 38,703
GFF3218
GFF3219 - hypothetical protein, at 38,717 to 39,154
GFF3219
GFF3220 - no description, at 39,179 to 39,790
GFF3220
Position (kb) 37
38
39 Strain fitness (log2 ratio) -2
-1
0
1
2 at 36.702 kb on + strand, within GFF3216 at 36.702 kb on + strand, within GFF3216 at 36.702 kb on + strand, within GFF3216 at 36.703 kb on - strand, within GFF3216 at 36.703 kb on - strand, within GFF3216 at 36.703 kb on - strand, within GFF3216 at 36.846 kb on - strand, within GFF3216 at 37.077 kb on + strand at 37.077 kb on + strand at 37.078 kb on - strand at 37.078 kb on - strand at 37.201 kb on - strand, within GFF3217 at 37.284 kb on + strand, within GFF3217 at 37.284 kb on + strand, within GFF3217 at 37.284 kb on + strand, within GFF3217 at 37.285 kb on - strand, within GFF3217 at 37.285 kb on - strand, within GFF3217 at 37.285 kb on - strand, within GFF3217 at 37.318 kb on - strand, within GFF3217 at 37.391 kb on + strand, within GFF3217 at 37.391 kb on + strand, within GFF3217 at 37.391 kb on + strand, within GFF3217 at 37.392 kb on - strand, within GFF3217 at 37.392 kb on - strand, within GFF3217 at 37.392 kb on - strand, within GFF3217 at 37.392 kb on - strand, within GFF3217 at 37.392 kb on - strand, within GFF3217 at 37.392 kb on - strand, within GFF3217 at 37.448 kb on + strand, within GFF3217 at 37.501 kb on + strand, within GFF3217 at 37.501 kb on + strand, within GFF3217 at 37.501 kb on + strand, within GFF3217 at 37.501 kb on + strand, within GFF3217 at 37.501 kb on + strand, within GFF3217 at 37.502 kb on - strand, within GFF3217 at 37.502 kb on - strand, within GFF3217 at 37.502 kb on - strand, within GFF3217 at 37.502 kb on - strand, within GFF3217 at 37.502 kb on - strand, within GFF3217 at 37.502 kb on - strand, within GFF3217 at 37.502 kb on - strand, within GFF3217 at 37.521 kb on + strand, within GFF3217 at 37.521 kb on + strand, within GFF3217 at 37.641 kb on + strand at 37.642 kb on + strand at 37.642 kb on - strand at 37.642 kb on - strand at 37.642 kb on - strand at 37.642 kb on - strand at 37.642 kb on - strand at 37.665 kb on + strand at 37.666 kb on - strand at 37.694 kb on + strand at 37.695 kb on - strand at 37.712 kb on + strand at 37.712 kb on + strand at 37.713 kb on - strand at 37.808 kb on + strand, within GFF3218 at 37.808 kb on + strand, within GFF3218 at 37.808 kb on + strand, within GFF3218 at 37.808 kb on + strand, within GFF3218 at 37.809 kb on - strand, within GFF3218 at 38.018 kb on + strand, within GFF3218 at 38.018 kb on + strand, within GFF3218 at 38.019 kb on - strand, within GFF3218 at 38.019 kb on - strand, within GFF3218 at 38.019 kb on - strand, within GFF3218 at 38.111 kb on + strand, within GFF3218 at 38.111 kb on + strand, within GFF3218 at 38.111 kb on + strand, within GFF3218 at 38.112 kb on - strand, within GFF3218 at 38.125 kb on - strand, within GFF3218 at 38.223 kb on - strand, within GFF3218 at 38.255 kb on + strand, within GFF3218 at 38.255 kb on + strand, within GFF3218 at 38.255 kb on + strand, within GFF3218 at 38.256 kb on - strand, within GFF3218 at 38.256 kb on - strand, within GFF3218 at 38.256 kb on - strand, within GFF3218 at 38.262 kb on + strand, within GFF3218 at 38.324 kb on + strand, within GFF3218 at 38.567 kb on + strand, within GFF3218 at 38.567 kb on + strand, within GFF3218 at 38.567 kb on + strand, within GFF3218 at 38.567 kb on + strand, within GFF3218 at 38.568 kb on - strand, within GFF3218 at 38.616 kb on - strand at 38.638 kb on + strand at 38.639 kb on - strand at 38.974 kb on - strand, within GFF3219 at 38.974 kb on - strand, within GFF3219 at 38.984 kb on + strand, within GFF3219 at 38.985 kb on - strand, within GFF3219 at 38.985 kb on - strand, within GFF3219 at 38.985 kb on - strand, within GFF3219 at 38.985 kb on - strand, within GFF3219 at 38.985 kb on - strand, within GFF3219 at 39.045 kb on + strand, within GFF3219 at 39.045 kb on + strand, within GFF3219 at 39.045 kb on + strand, within GFF3219 at 39.045 kb on + strand, within GFF3219 at 39.045 kb on + strand, within GFF3219 at 39.046 kb on - strand, within GFF3219 at 39.147 kb on + strand at 39.180 kb on + strand at 39.181 kb on - strand at 39.636 kb on + strand, within GFF3220
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL remove 36,702 + GFF3216 0.24 +1.7 36,702 + GFF3216 0.24 -0.7 36,702 + GFF3216 0.24 +0.0 36,703 - GFF3216 0.24 -0.8 36,703 - GFF3216 0.24 -0.3 36,703 - GFF3216 0.24 -0.9 36,846 - GFF3216 0.54 +0.1 37,077 + +0.1 37,077 + +0.5 37,078 - +0.4 37,078 - -2.2 37,201 - GFF3217 0.20 -1.8 37,284 + GFF3217 0.34 +0.2 37,284 + GFF3217 0.34 +0.1 37,284 + GFF3217 0.34 -0.5 37,285 - GFF3217 0.34 -0.5 37,285 - GFF3217 0.34 +0.7 37,285 - GFF3217 0.34 +0.3 37,318 - GFF3217 0.40 -1.4 37,391 + GFF3217 0.51 -0.6 37,391 + GFF3217 0.51 -0.3 37,391 + GFF3217 0.51 +0.4 37,392 - GFF3217 0.52 +0.1 37,392 - GFF3217 0.52 +0.1 37,392 - GFF3217 0.52 -0.4 37,392 - GFF3217 0.52 +0.5 37,392 - GFF3217 0.52 -0.6 37,392 - GFF3217 0.52 +0.6 37,448 + GFF3217 0.61 -0.6 37,501 + GFF3217 0.69 -0.6 37,501 + GFF3217 0.69 +0.9 37,501 + GFF3217 0.69 +0.2 37,501 + GFF3217 0.69 -0.9 37,501 + GFF3217 0.69 +2.6 37,502 - GFF3217 0.70 -1.2 37,502 - GFF3217 0.70 -0.0 37,502 - GFF3217 0.70 -0.5 37,502 - GFF3217 0.70 -0.9 37,502 - GFF3217 0.70 -1.0 37,502 - GFF3217 0.70 -0.6 37,502 - GFF3217 0.70 +0.3 37,521 + GFF3217 0.73 +0.0 37,521 + GFF3217 0.73 +0.1 37,641 + -0.1 37,642 + -1.2 37,642 - -0.1 37,642 - -0.5 37,642 - +0.7 37,642 - +0.2 37,642 - -0.3 37,665 + -0.2 37,666 - -0.2 37,694 + +0.7 37,695 - +0.2 37,712 + -0.4 37,712 + -1.5 37,713 - +1.8 37,808 + GFF3218 0.12 -0.5 37,808 + GFF3218 0.12 -1.5 37,808 + GFF3218 0.12 -0.8 37,808 + GFF3218 0.12 -0.6 37,809 - GFF3218 0.12 -0.1 38,018 + GFF3218 0.32 -0.1 38,018 + GFF3218 0.32 +0.1 38,019 - GFF3218 0.32 -0.0 38,019 - GFF3218 0.32 -1.0 38,019 - GFF3218 0.32 +0.5 38,111 + GFF3218 0.42 -0.5 38,111 + GFF3218 0.42 -0.7 38,111 + GFF3218 0.42 -0.2 38,112 - GFF3218 0.42 -0.8 38,125 - GFF3218 0.43 -0.4 38,223 - GFF3218 0.53 +1.0 38,255 + GFF3218 0.56 -0.3 38,255 + GFF3218 0.56 -0.7 38,255 + GFF3218 0.56 -0.8 38,256 - GFF3218 0.56 +0.8 38,256 - GFF3218 0.56 +0.3 38,256 - GFF3218 0.56 -0.5 38,262 + GFF3218 0.56 -0.0 38,324 + GFF3218 0.63 +1.8 38,567 + GFF3218 0.86 -1.1 38,567 + GFF3218 0.86 -1.8 38,567 + GFF3218 0.86 -1.3 38,567 + GFF3218 0.86 +0.8 38,568 - GFF3218 0.87 +1.5 38,616 - -0.3 38,638 + +0.4 38,639 - -0.6 38,974 - GFF3219 0.59 -0.3 38,974 - GFF3219 0.59 +0.2 38,984 + GFF3219 0.61 +0.2 38,985 - GFF3219 0.61 -0.0 38,985 - GFF3219 0.61 -1.0 38,985 - GFF3219 0.61 -0.3 38,985 - GFF3219 0.61 -1.2 38,985 - GFF3219 0.61 +1.0 39,045 + GFF3219 0.75 -1.3 39,045 + GFF3219 0.75 +0.8 39,045 + GFF3219 0.75 +0.4 39,045 + GFF3219 0.75 -0.5 39,045 + GFF3219 0.75 -0.8 39,046 - GFF3219 0.75 -1.6 39,147 + +0.2 39,180 + +0.4 39,181 - -0.2 39,636 + GFF3220 0.75 -1.3
Or see this region's nucleotide sequence