Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2494 and GFF2495 are separated by 19 nucleotides GFF2495 and GFF2496 are separated by 62 nucleotides GFF2496 and GFF2497 are separated by 169 nucleotides
GFF2494 - Threonine-synthase-like protein 4, at 552,866 to 554,014
GFF2494
GFF2495 - Ornithine cyclodeaminase (EC 4.3.1.12), at 554,034 to 555,020
GFF2495
GFF2496 - hypothetical protein, at 555,083 to 555,391
GFF2496
GFF2497 - Protein translocase subunit SecA, at 555,561 to 558,347
GFF2497
Position (kb) 554
555
556 Strain fitness (log2 ratio) -2
-1
0
1
2 at 553.087 kb on + strand, within GFF2494 at 553.088 kb on - strand, within GFF2494 at 553.088 kb on - strand, within GFF2494 at 553.088 kb on - strand, within GFF2494 at 553.088 kb on - strand, within GFF2494 at 553.128 kb on - strand, within GFF2494 at 553.313 kb on + strand, within GFF2494 at 553.313 kb on + strand, within GFF2494 at 553.313 kb on + strand, within GFF2494 at 553.313 kb on + strand, within GFF2494 at 553.313 kb on + strand, within GFF2494 at 553.314 kb on - strand, within GFF2494 at 553.397 kb on + strand, within GFF2494 at 553.398 kb on - strand, within GFF2494 at 553.398 kb on - strand, within GFF2494 at 553.430 kb on + strand, within GFF2494 at 553.430 kb on + strand, within GFF2494 at 553.430 kb on + strand, within GFF2494 at 553.431 kb on - strand, within GFF2494 at 553.484 kb on + strand, within GFF2494 at 553.857 kb on - strand, within GFF2494 at 554.013 kb on - strand at 554.013 kb on - strand at 554.516 kb on + strand, within GFF2495 at 554.516 kb on + strand, within GFF2495 at 554.516 kb on + strand, within GFF2495 at 554.517 kb on - strand, within GFF2495 at 554.517 kb on - strand, within GFF2495 at 554.517 kb on - strand, within GFF2495 at 554.517 kb on - strand, within GFF2495 at 554.517 kb on - strand, within GFF2495 at 554.517 kb on - strand, within GFF2495 at 554.517 kb on - strand, within GFF2495 at 554.518 kb on + strand, within GFF2495 at 554.518 kb on + strand, within GFF2495 at 554.518 kb on + strand, within GFF2495 at 554.518 kb on + strand, within GFF2495 at 554.519 kb on - strand, within GFF2495 at 554.519 kb on - strand, within GFF2495 at 554.519 kb on - strand, within GFF2495 at 554.519 kb on - strand, within GFF2495 at 554.519 kb on - strand, within GFF2495 at 554.519 kb on - strand, within GFF2495 at 554.519 kb on - strand, within GFF2495 at 555.094 kb on + strand at 555.094 kb on + strand at 555.094 kb on + strand at 555.094 kb on + strand at 555.094 kb on + strand at 555.094 kb on + strand at 555.094 kb on + strand at 555.094 kb on + strand at 555.095 kb on - strand at 555.095 kb on - strand at 555.095 kb on - strand at 555.095 kb on - strand at 555.095 kb on - strand at 555.388 kb on - strand at 555.388 kb on - strand at 555.388 kb on - strand at 555.395 kb on + strand at 555.395 kb on + strand at 555.407 kb on + strand at 555.422 kb on + strand at 555.422 kb on + strand at 555.422 kb on + strand at 555.422 kb on + strand at 555.423 kb on - strand at 555.423 kb on - strand at 555.423 kb on - strand at 555.423 kb on - strand at 555.503 kb on + strand at 555.503 kb on + strand at 555.503 kb on + strand at 555.503 kb on + strand at 555.503 kb on + strand at 555.503 kb on + strand at 555.503 kb on + strand at 555.503 kb on + strand at 555.503 kb on + strand at 555.503 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL remove 553,087 + GFF2494 0.19 -0.2 553,088 - GFF2494 0.19 -0.1 553,088 - GFF2494 0.19 +0.6 553,088 - GFF2494 0.19 +1.7 553,088 - GFF2494 0.19 +1.1 553,128 - GFF2494 0.23 +1.1 553,313 + GFF2494 0.39 +0.1 553,313 + GFF2494 0.39 -0.3 553,313 + GFF2494 0.39 -0.8 553,313 + GFF2494 0.39 +0.3 553,313 + GFF2494 0.39 -0.0 553,314 - GFF2494 0.39 -0.2 553,397 + GFF2494 0.46 -0.1 553,398 - GFF2494 0.46 +0.8 553,398 - GFF2494 0.46 -1.3 553,430 + GFF2494 0.49 -0.7 553,430 + GFF2494 0.49 -0.5 553,430 + GFF2494 0.49 -0.1 553,431 - GFF2494 0.49 +1.4 553,484 + GFF2494 0.54 +0.4 553,857 - GFF2494 0.86 -0.8 554,013 - -1.1 554,013 - +0.1 554,516 + GFF2495 0.49 +0.7 554,516 + GFF2495 0.49 -0.5 554,516 + GFF2495 0.49 -1.2 554,517 - GFF2495 0.49 -0.1 554,517 - GFF2495 0.49 -1.2 554,517 - GFF2495 0.49 -0.0 554,517 - GFF2495 0.49 +2.3 554,517 - GFF2495 0.49 +0.1 554,517 - GFF2495 0.49 -0.7 554,517 - GFF2495 0.49 -0.1 554,518 + GFF2495 0.49 -0.1 554,518 + GFF2495 0.49 -0.5 554,518 + GFF2495 0.49 -2.7 554,518 + GFF2495 0.49 +1.7 554,519 - GFF2495 0.49 -0.3 554,519 - GFF2495 0.49 -0.2 554,519 - GFF2495 0.49 -0.5 554,519 - GFF2495 0.49 -0.7 554,519 - GFF2495 0.49 -0.8 554,519 - GFF2495 0.49 -0.2 554,519 - GFF2495 0.49 +0.3 555,094 + -0.0 555,094 + +0.3 555,094 + -1.2 555,094 + -1.0 555,094 + -0.4 555,094 + +0.1 555,094 + -2.7 555,094 + -0.5 555,095 - -0.0 555,095 - -0.3 555,095 - +0.4 555,095 - -0.8 555,095 - +0.3 555,388 - -1.1 555,388 - +0.1 555,388 - -0.3 555,395 + -0.0 555,395 + +0.6 555,407 + -1.4 555,422 + -1.2 555,422 + -0.7 555,422 + +0.2 555,422 + +2.0 555,423 - -1.0 555,423 - -1.5 555,423 - -0.9 555,423 - +0.1 555,503 + -0.5 555,503 + -0.9 555,503 + +1.7 555,503 + -0.3 555,503 + -0.3 555,503 + -0.4 555,503 + -0.1 555,503 + -0.9 555,503 + +0.3 555,503 + -0.5
Or see this region's nucleotide sequence