Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2205 and GFF2206 overlap by 4 nucleotides GFF2206 and GFF2207 overlap by 4 nucleotides GFF2207 and GFF2208 overlap by 8 nucleotides
GFF2205 - hypothetical protein, at 266,597 to 267,580
GFF2205
GFF2206 - Type II/IV secretion system protein TadC, associated with Flp pilus assembly, at 267,577 to 268,539
GFF2206
GFF2207 - Flp pilus assembly protein TadB, at 268,536 to 269,534
GFF2207
GFF2208 - Type II/IV secretion system ATP hydrolase TadA/VirB11/CpaF, TadA subfamily, at 269,527 to 270,840
GFF2208
Position (kb) 267
268
269 Strain fitness (log2 ratio) -2
-1
0
1
2 at 266.606 kb on - strand at 266.937 kb on + strand, within GFF2205 at 267.120 kb on + strand, within GFF2205 at 267.196 kb on + strand, within GFF2205 at 267.197 kb on - strand, within GFF2205 at 267.197 kb on - strand, within GFF2205 at 267.198 kb on + strand, within GFF2205 at 267.198 kb on + strand, within GFF2205 at 267.199 kb on - strand, within GFF2205 at 267.199 kb on - strand, within GFF2205 at 267.360 kb on + strand, within GFF2205 at 267.360 kb on + strand, within GFF2205 at 267.360 kb on + strand, within GFF2205 at 267.563 kb on + strand at 267.564 kb on - strand at 267.887 kb on + strand, within GFF2206 at 267.922 kb on + strand, within GFF2206 at 267.923 kb on - strand, within GFF2206 at 267.923 kb on - strand, within GFF2206 at 268.560 kb on + strand at 268.560 kb on + strand at 268.560 kb on + strand at 268.560 kb on + strand at 268.560 kb on + strand at 268.561 kb on - strand at 268.600 kb on + strand at 268.600 kb on + strand at 268.601 kb on - strand at 268.601 kb on - strand at 268.601 kb on - strand at 268.604 kb on + strand at 268.604 kb on + strand at 268.605 kb on - strand at 268.659 kb on - strand, within GFF2207 at 269.037 kb on + strand, within GFF2207 at 269.041 kb on + strand, within GFF2207 at 269.042 kb on - strand, within GFF2207 at 269.172 kb on + strand, within GFF2207 at 269.173 kb on - strand, within GFF2207 at 269.173 kb on - strand, within GFF2207 at 269.173 kb on - strand, within GFF2207 at 269.300 kb on + strand, within GFF2207
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL remove 266,606 - +0.7 266,937 + GFF2205 0.35 +0.9 267,120 + GFF2205 0.53 +0.6 267,196 + GFF2205 0.61 -1.5 267,197 - GFF2205 0.61 -0.6 267,197 - GFF2205 0.61 -1.4 267,198 + GFF2205 0.61 +0.5 267,198 + GFF2205 0.61 -1.0 267,199 - GFF2205 0.61 -0.2 267,199 - GFF2205 0.61 +0.0 267,360 + GFF2205 0.78 +0.6 267,360 + GFF2205 0.78 +0.6 267,360 + GFF2205 0.78 -1.1 267,563 + +0.7 267,564 - -1.9 267,887 + GFF2206 0.32 +0.5 267,922 + GFF2206 0.36 +0.1 267,923 - GFF2206 0.36 +0.3 267,923 - GFF2206 0.36 +2.7 268,560 + -0.2 268,560 + -0.9 268,560 + +0.6 268,560 + +0.7 268,560 + +0.4 268,561 - -0.6 268,600 + +1.1 268,600 + +0.7 268,601 - +0.9 268,601 - -0.0 268,601 - +0.4 268,604 + +0.4 268,604 + -0.3 268,605 - +0.5 268,659 - GFF2207 0.12 -0.3 269,037 + GFF2207 0.50 +1.6 269,041 + GFF2207 0.51 +0.7 269,042 - GFF2207 0.51 -0.2 269,172 + GFF2207 0.64 -0.6 269,173 - GFF2207 0.64 -0.7 269,173 - GFF2207 0.64 -1.3 269,173 - GFF2207 0.64 -2.0 269,300 + GFF2207 0.76 -0.6
Or see this region's nucleotide sequence