Strain Fitness in Variovorax sp. SCN45 around GFF2078

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2077 and GFF2078 are separated by 3 nucleotidesGFF2078 and GFF2079 are separated by 48 nucleotides GFF2077 - Acetyl-CoA synthetase (ADP-forming) alpha and beta chains, putative, at 123,454 to 124,794 GFF2077 GFF2078 - hypothetical protein, at 124,798 to 126,186 GFF2078 GFF2079 - BUG/TctC family periplasmic protein, at 126,235 to 127,227 GFF2079 Position (kb) 124 125 126 127Strain fitness (log2 ratio) -2 -1 0 1 2at 123.872 kb on + strand, within GFF2077at 123.872 kb on + strand, within GFF2077at 123.873 kb on - strand, within GFF2077at 123.873 kb on - strand, within GFF2077at 124.469 kb on + strand, within GFF2077at 124.469 kb on + strand, within GFF2077at 124.470 kb on - strand, within GFF2077at 124.470 kb on - strand, within GFF2077at 124.470 kb on - strand, within GFF2077at 124.470 kb on - strand, within GFF2077at 124.493 kb on + strand, within GFF2077at 124.493 kb on + strand, within GFF2077at 124.494 kb on - strand, within GFF2077at 124.494 kb on - strand, within GFF2077at 124.494 kb on - strand, within GFF2077at 124.494 kb on - strand, within GFF2077at 124.494 kb on - strand, within GFF2077at 124.494 kb on - strand, within GFF2077at 124.494 kb on - strand, within GFF2077at 124.494 kb on - strand, within GFF2077at 124.496 kb on + strand, within GFF2077at 124.497 kb on - strand, within GFF2077at 124.497 kb on - strand, within GFF2077at 124.565 kb on + strand, within GFF2077at 124.565 kb on + strand, within GFF2077at 124.566 kb on - strand, within GFF2077at 124.566 kb on - strand, within GFF2077at 124.566 kb on - strand, within GFF2077at 124.566 kb on - strand, within GFF2077at 124.739 kb on + strandat 124.739 kb on + strandat 124.740 kb on - strandat 124.740 kb on - strandat 124.740 kb on - strandat 124.740 kb on - strandat 124.859 kb on + strandat 124.859 kb on + strandat 124.859 kb on + strandat 124.859 kb on + strandat 124.859 kb on + strandat 124.859 kb on + strandat 124.859 kb on + strandat 124.859 kb on + strandat 124.860 kb on - strandat 124.860 kb on - strandat 124.877 kb on + strandat 124.877 kb on + strandat 124.878 kb on - strandat 125.021 kb on + strand, within GFF2078at 125.021 kb on + strand, within GFF2078at 125.042 kb on + strand, within GFF2078at 125.159 kb on + strand, within GFF2078at 125.159 kb on + strand, within GFF2078at 125.159 kb on + strand, within GFF2078at 125.159 kb on + strand, within GFF2078at 125.160 kb on - strand, within GFF2078at 125.160 kb on - strand, within GFF2078at 125.161 kb on + strand, within GFF2078at 125.162 kb on - strand, within GFF2078at 125.199 kb on - strand, within GFF2078at 125.816 kb on + strand, within GFF2078at 125.816 kb on + strand, within GFF2078at 125.816 kb on + strand, within GFF2078at 125.817 kb on - strand, within GFF2078at 125.825 kb on + strand, within GFF2078at 125.844 kb on - strand, within GFF2078at 125.921 kb on + strand, within GFF2078at 125.922 kb on - strand, within GFF2078at 126.080 kb on + strandat 126.104 kb on + strandat 126.105 kb on - strandat 126.296 kb on + strandat 126.297 kb on - strandat 126.297 kb on - strandat 126.297 kb on - strandat 126.297 kb on - strandat 126.297 kb on - strandat 126.470 kb on + strand, within GFF2079at 126.470 kb on + strand, within GFF2079at 126.470 kb on + strand, within GFF2079at 126.470 kb on + strand, within GFF2079at 126.471 kb on - strand, within GFF2079at 126.471 kb on - strand, within GFF2079at 126.471 kb on - strand, within GFF2079at 126.471 kb on - strand, within GFF2079at 126.485 kb on + strand, within GFF2079at 126.578 kb on + strand, within GFF2079at 126.578 kb on + strand, within GFF2079at 126.579 kb on - strand, within GFF2079at 126.579 kb on - strand, within GFF2079at 126.579 kb on - strand, within GFF2079at 126.579 kb on - strand, within GFF2079at 126.579 kb on - strand, within GFF2079at 126.579 kb on - strand, within GFF2079at 126.662 kb on + strand, within GFF2079at 126.662 kb on + strand, within GFF2079at 126.662 kb on + strand, within GFF2079at 126.662 kb on + strand, within GFF2079at 126.662 kb on + strand, within GFF2079at 126.663 kb on - strand, within GFF2079at 126.663 kb on - strand, within GFF2079at 126.690 kb on - strand, within GFF2079at 126.704 kb on + strand, within GFF2079at 126.704 kb on + strand, within GFF2079at 126.704 kb on + strand, within GFF2079at 126.704 kb on + strand, within GFF2079at 126.705 kb on - strand, within GFF2079at 126.705 kb on - strand, within GFF2079at 126.705 kb on - strand, within GFF2079at 126.755 kb on + strand, within GFF2079at 126.755 kb on + strand, within GFF2079at 126.755 kb on + strand, within GFF2079at 126.756 kb on - strand, within GFF2079at 126.756 kb on - strand, within GFF2079at 126.823 kb on + strand, within GFF2079at 126.823 kb on + strand, within GFF2079at 126.823 kb on + strand, within GFF2079at 126.824 kb on - strand, within GFF2079at 126.824 kb on - strand, within GFF2079at 126.824 kb on - strand, within GFF2079at 126.902 kb on + strand, within GFF2079at 126.903 kb on - strand, within GFF2079at 126.903 kb on - strand, within GFF2079at 126.903 kb on - strand, within GFF2079at 126.903 kb on - strand, within GFF2079at 126.953 kb on + strand, within GFF2079at 126.954 kb on - strand, within GFF2079at 126.981 kb on - strand, within GFF2079at 127.027 kb on + strand, within GFF2079

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
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123,872 + GFF2077 0.31 +0.6
123,872 + GFF2077 0.31 -1.4
123,873 - GFF2077 0.31 +0.1
123,873 - GFF2077 0.31 -1.1
124,469 + GFF2077 0.76 +0.3
124,469 + GFF2077 0.76 -0.6
124,470 - GFF2077 0.76 -0.9
124,470 - GFF2077 0.76 +0.9
124,470 - GFF2077 0.76 -0.4
124,470 - GFF2077 0.76 -0.3
124,493 + GFF2077 0.77 +0.5
124,493 + GFF2077 0.77 -0.4
124,494 - GFF2077 0.78 -0.5
124,494 - GFF2077 0.78 +0.4
124,494 - GFF2077 0.78 +0.0
124,494 - GFF2077 0.78 -0.5
124,494 - GFF2077 0.78 +1.5
124,494 - GFF2077 0.78 -1.2
124,494 - GFF2077 0.78 +0.2
124,494 - GFF2077 0.78 -0.9
124,496 + GFF2077 0.78 +0.2
124,497 - GFF2077 0.78 +0.7
124,497 - GFF2077 0.78 -0.1
124,565 + GFF2077 0.83 +0.2
124,565 + GFF2077 0.83 +0.2
124,566 - GFF2077 0.83 -0.0
124,566 - GFF2077 0.83 -0.2
124,566 - GFF2077 0.83 -0.6
124,566 - GFF2077 0.83 +0.4
124,739 + -0.8
124,739 + -0.3
124,740 - -2.0
124,740 - +0.3
124,740 - +0.5
124,740 - +0.7
124,859 + -0.2
124,859 + -0.9
124,859 + -2.3
124,859 + -2.0
124,859 + -1.3
124,859 + -0.1
124,859 + -0.6
124,859 + +0.2
124,860 - -0.2
124,860 - +2.7
124,877 + -0.5
124,877 + +1.0
124,878 - +0.1
125,021 + GFF2078 0.16 +0.2
125,021 + GFF2078 0.16 -0.4
125,042 + GFF2078 0.18 -0.8
125,159 + GFF2078 0.26 +2.2
125,159 + GFF2078 0.26 -1.4
125,159 + GFF2078 0.26 -0.9
125,159 + GFF2078 0.26 -0.7
125,160 - GFF2078 0.26 +1.4
125,160 - GFF2078 0.26 +0.8
125,161 + GFF2078 0.26 +0.7
125,162 - GFF2078 0.26 -0.3
125,199 - GFF2078 0.29 -0.9
125,816 + GFF2078 0.73 -1.2
125,816 + GFF2078 0.73 -0.1
125,816 + GFF2078 0.73 -0.2
125,817 - GFF2078 0.73 -2.3
125,825 + GFF2078 0.74 -0.2
125,844 - GFF2078 0.75 +0.0
125,921 + GFF2078 0.81 -0.1
125,922 - GFF2078 0.81 -1.5
126,080 + -0.6
126,104 + +0.0
126,105 - +0.7
126,296 + +0.0
126,297 - -0.9
126,297 - +0.3
126,297 - +0.3
126,297 - +0.7
126,297 - +1.1
126,470 + GFF2079 0.24 -0.4
126,470 + GFF2079 0.24 -0.7
126,470 + GFF2079 0.24 -0.2
126,470 + GFF2079 0.24 -0.4
126,471 - GFF2079 0.24 -0.4
126,471 - GFF2079 0.24 +1.9
126,471 - GFF2079 0.24 +0.1
126,471 - GFF2079 0.24 -0.1
126,485 + GFF2079 0.25 -0.3
126,578 + GFF2079 0.35 +1.0
126,578 + GFF2079 0.35 +0.2
126,579 - GFF2079 0.35 +0.4
126,579 - GFF2079 0.35 +0.2
126,579 - GFF2079 0.35 -0.3
126,579 - GFF2079 0.35 -0.6
126,579 - GFF2079 0.35 -0.2
126,579 - GFF2079 0.35 +2.2
126,662 + GFF2079 0.43 -0.2
126,662 + GFF2079 0.43 -0.9
126,662 + GFF2079 0.43 +2.7
126,662 + GFF2079 0.43 +1.1
126,662 + GFF2079 0.43 +1.7
126,663 - GFF2079 0.43 -0.5
126,663 - GFF2079 0.43 +0.0
126,690 - GFF2079 0.46 +0.7
126,704 + GFF2079 0.47 +0.0
126,704 + GFF2079 0.47 +0.1
126,704 + GFF2079 0.47 +1.5
126,704 + GFF2079 0.47 +0.4
126,705 - GFF2079 0.47 +0.2
126,705 - GFF2079 0.47 +0.0
126,705 - GFF2079 0.47 +0.1
126,755 + GFF2079 0.52 -0.2
126,755 + GFF2079 0.52 -0.3
126,755 + GFF2079 0.52 -1.1
126,756 - GFF2079 0.52 +0.3
126,756 - GFF2079 0.52 -0.6
126,823 + GFF2079 0.59 +0.1
126,823 + GFF2079 0.59 -0.4
126,823 + GFF2079 0.59 -0.9
126,824 - GFF2079 0.59 -0.8
126,824 - GFF2079 0.59 -0.2
126,824 - GFF2079 0.59 -0.3
126,902 + GFF2079 0.67 -1.1
126,903 - GFF2079 0.67 +1.0
126,903 - GFF2079 0.67 -0.3
126,903 - GFF2079 0.67 +0.9
126,903 - GFF2079 0.67 +0.4
126,953 + GFF2079 0.72 +0.0
126,954 - GFF2079 0.72 -0.0
126,981 - GFF2079 0.75 -0.6
127,027 + GFF2079 0.80 -0.3

Or see this region's nucleotide sequence