Strain Fitness in Variovorax sp. SCN45 around GFF1995

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1994 and GFF1995 are separated by 49 nucleotidesGFF1995 and GFF1996 are separated by 117 nucleotides GFF1994 - Glutamate carboxypeptidase (EC 3.4.17.11), at 36,421 to 37,671 GFF1994 GFF1995 - Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.8.1), at 37,721 to 38,851 GFF1995 GFF1996 - Indoleacetamide hydrolase (EC 3.5.1.-), at 38,969 to 40,489 GFF1996 Position (kb) 37 38 39Strain fitness (log2 ratio) -2 -1 0 1 2at 36.772 kb on + strand, within GFF1994at 36.772 kb on + strand, within GFF1994at 36.772 kb on + strand, within GFF1994at 36.772 kb on + strand, within GFF1994at 36.826 kb on + strand, within GFF1994at 36.898 kb on + strand, within GFF1994at 36.898 kb on + strand, within GFF1994at 36.899 kb on - strand, within GFF1994at 36.899 kb on - strand, within GFF1994at 36.914 kb on - strand, within GFF1994at 37.006 kb on + strand, within GFF1994at 37.007 kb on - strand, within GFF1994at 37.007 kb on - strand, within GFF1994at 37.289 kb on - strand, within GFF1994at 37.451 kb on - strand, within GFF1994at 37.453 kb on + strand, within GFF1994at 37.453 kb on + strand, within GFF1994at 37.453 kb on + strand, within GFF1994at 37.453 kb on + strand, within GFF1994at 37.454 kb on - strand, within GFF1994at 37.454 kb on - strand, within GFF1994at 37.517 kb on - strand, within GFF1994at 37.573 kb on + strandat 37.573 kb on + strandat 37.573 kb on + strandat 37.573 kb on + strandat 37.594 kb on + strandat 37.594 kb on + strandat 37.594 kb on + strandat 37.594 kb on + strandat 37.595 kb on - strandat 37.627 kb on + strandat 37.627 kb on + strandat 37.627 kb on + strandat 37.627 kb on + strandat 37.627 kb on + strandat 37.627 kb on + strandat 37.628 kb on - strandat 37.628 kb on - strandat 37.628 kb on - strandat 37.628 kb on - strandat 37.628 kb on - strandat 37.628 kb on - strandat 37.628 kb on - strandat 37.628 kb on - strandat 37.669 kb on + strandat 37.669 kb on + strandat 37.669 kb on + strandat 37.669 kb on + strandat 37.669 kb on + strandat 37.670 kb on - strandat 37.670 kb on - strandat 37.670 kb on - strandat 37.670 kb on - strandat 37.670 kb on - strandat 37.865 kb on + strand, within GFF1995at 37.866 kb on - strand, within GFF1995at 37.910 kb on + strand, within GFF1995at 37.910 kb on + strand, within GFF1995at 37.911 kb on - strand, within GFF1995at 38.016 kb on - strand, within GFF1995at 38.156 kb on + strand, within GFF1995at 38.156 kb on + strand, within GFF1995at 38.156 kb on + strand, within GFF1995at 38.157 kb on - strand, within GFF1995at 38.157 kb on - strand, within GFF1995at 38.157 kb on - strand, within GFF1995at 38.292 kb on - strand, within GFF1995at 38.292 kb on - strand, within GFF1995at 38.292 kb on - strand, within GFF1995at 38.409 kb on - strand, within GFF1995at 38.409 kb on - strand, within GFF1995at 38.504 kb on + strand, within GFF1995at 38.505 kb on - strand, within GFF1995at 38.505 kb on - strand, within GFF1995at 38.735 kb on + strand, within GFF1995at 38.741 kb on + strandat 38.741 kb on + strandat 38.741 kb on + strandat 38.771 kb on + strandat 38.798 kb on + strandat 38.798 kb on + strandat 38.798 kb on + strandat 38.799 kb on - strandat 38.799 kb on - strandat 38.799 kb on - strandat 39.150 kb on - strand, within GFF1996at 39.306 kb on + strand, within GFF1996at 39.306 kb on + strand, within GFF1996at 39.306 kb on + strand, within GFF1996at 39.306 kb on + strand, within GFF1996at 39.306 kb on + strand, within GFF1996at 39.306 kb on + strand, within GFF1996at 39.306 kb on + strand, within GFF1996at 39.306 kb on + strand, within GFF1996at 39.306 kb on + strand, within GFF1996at 39.306 kb on + strand, within GFF1996at 39.306 kb on + strand, within GFF1996at 39.306 kb on + strand, within GFF1996at 39.306 kb on + strand, within GFF1996at 39.306 kb on + strand, within GFF1996at 39.306 kb on + strand, within GFF1996at 39.306 kb on + strand, within GFF1996at 39.307 kb on - strand, within GFF1996at 39.307 kb on - strand, within GFF1996at 39.307 kb on - strand, within GFF1996at 39.307 kb on - strand, within GFF1996at 39.307 kb on - strand, within GFF1996at 39.307 kb on - strand, within GFF1996at 39.307 kb on - strand, within GFF1996at 39.307 kb on - strand, within GFF1996at 39.307 kb on - strand, within GFF1996at 39.307 kb on - strand, within GFF1996at 39.307 kb on - strand, within GFF1996at 39.307 kb on - strand, within GFF1996at 39.307 kb on - strand, within GFF1996at 39.307 kb on - strand, within GFF1996at 39.307 kb on - strand, within GFF1996at 39.307 kb on - strand, within GFF1996at 39.307 kb on - strand, within GFF1996at 39.461 kb on + strand, within GFF1996at 39.462 kb on - strand, within GFF1996at 39.509 kb on + strand, within GFF1996at 39.833 kb on + strand, within GFF1996at 39.833 kb on + strand, within GFF1996at 39.833 kb on + strand, within GFF1996at 39.834 kb on - strand, within GFF1996at 39.834 kb on - strand, within GFF1996at 39.834 kb on - strand, within GFF1996

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
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36,772 + GFF1994 0.28 -0.9
36,772 + GFF1994 0.28 -2.2
36,772 + GFF1994 0.28 +0.3
36,772 + GFF1994 0.28 +1.4
36,826 + GFF1994 0.32 -0.9
36,898 + GFF1994 0.38 -0.7
36,898 + GFF1994 0.38 -0.4
36,899 - GFF1994 0.38 -0.0
36,899 - GFF1994 0.38 -0.9
36,914 - GFF1994 0.39 -1.2
37,006 + GFF1994 0.47 -0.2
37,007 - GFF1994 0.47 -0.7
37,007 - GFF1994 0.47 +0.1
37,289 - GFF1994 0.69 -0.3
37,451 - GFF1994 0.82 -0.0
37,453 + GFF1994 0.82 +0.4
37,453 + GFF1994 0.82 -1.4
37,453 + GFF1994 0.82 +1.4
37,453 + GFF1994 0.82 -0.5
37,454 - GFF1994 0.83 -0.9
37,454 - GFF1994 0.83 -0.3
37,517 - GFF1994 0.88 +0.7
37,573 + -0.4
37,573 + -1.4
37,573 + +0.1
37,573 + +2.1
37,594 + +2.1
37,594 + -0.6
37,594 + +0.3
37,594 + +0.4
37,595 - -1.3
37,627 + -0.4
37,627 + -0.7
37,627 + +0.5
37,627 + -0.5
37,627 + -0.2
37,627 + -0.9
37,628 - +0.4
37,628 - -0.8
37,628 - +0.5
37,628 - -0.3
37,628 - -0.8
37,628 - -0.0
37,628 - -0.4
37,628 - +0.4
37,669 + +0.2
37,669 + -0.3
37,669 + -0.9
37,669 + -0.4
37,669 + -1.6
37,670 - -0.1
37,670 - -1.6
37,670 - +1.4
37,670 - -0.2
37,670 - -0.7
37,865 + GFF1995 0.13 -1.6
37,866 - GFF1995 0.13 -2.2
37,910 + GFF1995 0.17 -0.3
37,910 + GFF1995 0.17 -0.3
37,911 - GFF1995 0.17 -0.3
38,016 - GFF1995 0.26 -1.4
38,156 + GFF1995 0.38 -1.1
38,156 + GFF1995 0.38 +0.1
38,156 + GFF1995 0.38 +0.0
38,157 - GFF1995 0.39 +1.5
38,157 - GFF1995 0.39 -0.7
38,157 - GFF1995 0.39 -0.4
38,292 - GFF1995 0.50 -0.3
38,292 - GFF1995 0.50 -0.5
38,292 - GFF1995 0.50 -1.4
38,409 - GFF1995 0.61 -0.4
38,409 - GFF1995 0.61 -0.6
38,504 + GFF1995 0.69 -1.6
38,505 - GFF1995 0.69 -0.4
38,505 - GFF1995 0.69 -1.3
38,735 + GFF1995 0.90 -0.9
38,741 + -2.7
38,741 + +0.4
38,741 + -0.9
38,771 + -1.1
38,798 + +0.1
38,798 + -0.5
38,798 + -0.2
38,799 - -0.1
38,799 - +0.6
38,799 - -0.6
39,150 - GFF1996 0.12 -0.3
39,306 + GFF1996 0.22 -1.0
39,306 + GFF1996 0.22 -0.4
39,306 + GFF1996 0.22 -0.6
39,306 + GFF1996 0.22 +0.6
39,306 + GFF1996 0.22 +1.2
39,306 + GFF1996 0.22 +0.1
39,306 + GFF1996 0.22 -0.2
39,306 + GFF1996 0.22 -1.1
39,306 + GFF1996 0.22 -0.4
39,306 + GFF1996 0.22 +0.6
39,306 + GFF1996 0.22 -0.8
39,306 + GFF1996 0.22 -0.0
39,306 + GFF1996 0.22 +0.3
39,306 + GFF1996 0.22 +0.6
39,306 + GFF1996 0.22 +0.1
39,306 + GFF1996 0.22 +0.5
39,307 - GFF1996 0.22 -1.4
39,307 - GFF1996 0.22 +0.2
39,307 - GFF1996 0.22 -0.8
39,307 - GFF1996 0.22 -2.3
39,307 - GFF1996 0.22 +0.1
39,307 - GFF1996 0.22 +1.7
39,307 - GFF1996 0.22 +0.3
39,307 - GFF1996 0.22 -0.1
39,307 - GFF1996 0.22 +0.5
39,307 - GFF1996 0.22 +0.3
39,307 - GFF1996 0.22 -1.1
39,307 - GFF1996 0.22 -0.5
39,307 - GFF1996 0.22 -0.1
39,307 - GFF1996 0.22 -0.0
39,307 - GFF1996 0.22 -1.0
39,307 - GFF1996 0.22 -0.0
39,307 - GFF1996 0.22 +0.5
39,461 + GFF1996 0.32 -0.8
39,462 - GFF1996 0.32 -0.7
39,509 + GFF1996 0.36 +0.7
39,833 + GFF1996 0.57 -0.7
39,833 + GFF1996 0.57 +0.1
39,833 + GFF1996 0.57 -0.9
39,834 - GFF1996 0.57 -1.3
39,834 - GFF1996 0.57 -0.4
39,834 - GFF1996 0.57 -0.6

Or see this region's nucleotide sequence