Strain Fitness in Variovorax sp. SCN45 around GFF1861

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1859 and GFF1860 are separated by 12 nucleotidesGFF1860 and GFF1861 are separated by 172 nucleotidesGFF1861 and GFF1862 are separated by 82 nucleotides GFF1859 - ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines), at 533,876 to 534,547 GFF1859 GFF1860 - ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines), at 534,560 to 535,327 GFF1860 GFF1861 - Transcriptional regulator, IclR family, at 535,500 to 536,324 GFF1861 GFF1862 - Adenosine deaminase (EC 3.5.4.4), at 536,407 to 537,468 GFF1862 Position (kb) 535 536 537Strain fitness (log2 ratio) -2 -1 0 1 2 3at 534.699 kb on + strand, within GFF1860at 534.699 kb on + strand, within GFF1860at 534.700 kb on - strand, within GFF1860at 534.700 kb on - strand, within GFF1860at 534.700 kb on - strand, within GFF1860at 534.700 kb on - strand, within GFF1860at 534.700 kb on - strand, within GFF1860at 534.700 kb on - strand, within GFF1860at 534.700 kb on - strand, within GFF1860at 534.700 kb on - strand, within GFF1860at 534.700 kb on - strand, within GFF1860at 534.747 kb on + strand, within GFF1860at 534.747 kb on + strand, within GFF1860at 534.748 kb on - strand, within GFF1860at 534.748 kb on - strand, within GFF1860at 534.828 kb on + strand, within GFF1860at 534.828 kb on + strand, within GFF1860at 534.828 kb on + strand, within GFF1860at 534.828 kb on + strand, within GFF1860at 534.828 kb on + strand, within GFF1860at 534.829 kb on - strand, within GFF1860at 534.829 kb on - strand, within GFF1860at 534.933 kb on + strand, within GFF1860at 534.933 kb on + strand, within GFF1860at 534.933 kb on + strand, within GFF1860at 534.933 kb on + strand, within GFF1860at 534.933 kb on + strand, within GFF1860at 534.934 kb on - strand, within GFF1860at 534.975 kb on + strand, within GFF1860at 534.975 kb on + strand, within GFF1860at 534.976 kb on - strand, within GFF1860at 534.981 kb on + strand, within GFF1860at 534.982 kb on - strand, within GFF1860at 534.982 kb on - strand, within GFF1860at 535.230 kb on + strand, within GFF1860at 535.230 kb on + strand, within GFF1860at 535.230 kb on + strand, within GFF1860at 535.231 kb on - strand, within GFF1860at 535.231 kb on - strand, within GFF1860at 535.231 kb on - strand, within GFF1860at 535.507 kb on + strandat 535.507 kb on + strandat 535.508 kb on - strandat 535.508 kb on - strandat 535.510 kb on - strandat 535.716 kb on + strand, within GFF1861at 535.747 kb on - strand, within GFF1861at 535.785 kb on + strand, within GFF1861at 535.785 kb on + strand, within GFF1861at 535.786 kb on - strand, within GFF1861at 535.786 kb on - strand, within GFF1861at 535.786 kb on - strand, within GFF1861at 535.896 kb on + strand, within GFF1861at 535.896 kb on + strand, within GFF1861at 535.896 kb on + strand, within GFF1861at 535.896 kb on + strand, within GFF1861at 535.897 kb on - strand, within GFF1861at 535.897 kb on - strand, within GFF1861at 535.897 kb on - strand, within GFF1861at 535.897 kb on - strand, within GFF1861at 535.897 kb on - strand, within GFF1861at 535.965 kb on + strand, within GFF1861at 535.965 kb on + strand, within GFF1861at 535.965 kb on + strand, within GFF1861at 535.965 kb on + strand, within GFF1861at 535.965 kb on + strand, within GFF1861at 535.965 kb on + strand, within GFF1861at 535.965 kb on + strand, within GFF1861at 535.965 kb on + strand, within GFF1861at 535.965 kb on + strand, within GFF1861at 535.966 kb on - strand, within GFF1861at 535.966 kb on - strand, within GFF1861at 535.966 kb on - strand, within GFF1861at 535.966 kb on - strand, within GFF1861at 535.966 kb on - strand, within GFF1861at 535.966 kb on - strand, within GFF1861at 535.966 kb on - strand, within GFF1861at 535.966 kb on - strand, within GFF1861at 536.332 kb on - strandat 536.367 kb on + strandat 536.368 kb on - strandat 536.368 kb on - strandat 536.428 kb on + strandat 536.428 kb on + strandat 536.428 kb on + strandat 536.428 kb on + strandat 536.429 kb on - strandat 536.429 kb on - strandat 536.644 kb on + strand, within GFF1862at 536.644 kb on + strand, within GFF1862at 536.644 kb on + strand, within GFF1862at 536.644 kb on + strand, within GFF1862at 536.644 kb on + strand, within GFF1862at 536.644 kb on + strand, within GFF1862at 536.644 kb on + strand, within GFF1862at 536.644 kb on + strand, within GFF1862at 536.644 kb on + strand, within GFF1862at 536.644 kb on + strand, within GFF1862at 536.645 kb on - strand, within GFF1862at 536.645 kb on - strand, within GFF1862at 536.647 kb on + strand, within GFF1862at 536.648 kb on - strand, within GFF1862at 536.648 kb on - strand, within GFF1862at 536.648 kb on - strand, within GFF1862at 536.648 kb on - strand, within GFF1862at 536.686 kb on + strand, within GFF1862at 536.686 kb on + strand, within GFF1862at 536.686 kb on + strand, within GFF1862at 536.687 kb on - strand, within GFF1862at 536.704 kb on + strand, within GFF1862at 537.070 kb on + strand, within GFF1862at 537.070 kb on + strand, within GFF1862at 537.070 kb on + strand, within GFF1862at 537.310 kb on + strand, within GFF1862at 537.310 kb on + strand, within GFF1862at 537.311 kb on - strand, within GFF1862

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
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534,699 + GFF1860 0.18 +0.6
534,699 + GFF1860 0.18 +0.1
534,700 - GFF1860 0.18 +0.0
534,700 - GFF1860 0.18 -0.5
534,700 - GFF1860 0.18 +0.9
534,700 - GFF1860 0.18 +0.2
534,700 - GFF1860 0.18 +0.1
534,700 - GFF1860 0.18 -0.6
534,700 - GFF1860 0.18 +1.4
534,700 - GFF1860 0.18 -0.5
534,700 - GFF1860 0.18 -0.1
534,747 + GFF1860 0.24 +0.1
534,747 + GFF1860 0.24 -1.3
534,748 - GFF1860 0.24 +0.0
534,748 - GFF1860 0.24 -1.2
534,828 + GFF1860 0.35 -1.5
534,828 + GFF1860 0.35 -1.2
534,828 + GFF1860 0.35 -1.9
534,828 + GFF1860 0.35 +0.9
534,828 + GFF1860 0.35 -0.5
534,829 - GFF1860 0.35 -1.7
534,829 - GFF1860 0.35 -0.0
534,933 + GFF1860 0.49 -0.5
534,933 + GFF1860 0.49 -0.1
534,933 + GFF1860 0.49 -0.6
534,933 + GFF1860 0.49 +0.2
534,933 + GFF1860 0.49 +0.1
534,934 - GFF1860 0.49 -0.4
534,975 + GFF1860 0.54 -0.9
534,975 + GFF1860 0.54 -0.3
534,976 - GFF1860 0.54 -0.7
534,981 + GFF1860 0.55 +0.1
534,982 - GFF1860 0.55 +0.1
534,982 - GFF1860 0.55 -0.6
535,230 + GFF1860 0.87 -0.2
535,230 + GFF1860 0.87 +1.1
535,230 + GFF1860 0.87 +0.2
535,231 - GFF1860 0.87 -0.1
535,231 - GFF1860 0.87 +0.9
535,231 - GFF1860 0.87 +0.1
535,507 + +1.5
535,507 + +1.6
535,508 - +1.9
535,508 - +1.9
535,510 - +3.1
535,716 + GFF1861 0.26 +0.6
535,747 - GFF1861 0.30 +1.4
535,785 + GFF1861 0.35 +0.7
535,785 + GFF1861 0.35 +2.2
535,786 - GFF1861 0.35 +1.7
535,786 - GFF1861 0.35 +1.9
535,786 - GFF1861 0.35 +0.8
535,896 + GFF1861 0.48 +1.1
535,896 + GFF1861 0.48 +0.3
535,896 + GFF1861 0.48 +1.3
535,896 + GFF1861 0.48 +1.6
535,897 - GFF1861 0.48 +1.4
535,897 - GFF1861 0.48 +1.9
535,897 - GFF1861 0.48 +3.5
535,897 - GFF1861 0.48 +1.3
535,897 - GFF1861 0.48 +1.1
535,965 + GFF1861 0.56 +2.0
535,965 + GFF1861 0.56 +1.4
535,965 + GFF1861 0.56 +1.7
535,965 + GFF1861 0.56 +1.1
535,965 + GFF1861 0.56 +2.0
535,965 + GFF1861 0.56 +2.7
535,965 + GFF1861 0.56 +1.8
535,965 + GFF1861 0.56 +2.8
535,965 + GFF1861 0.56 +1.8
535,966 - GFF1861 0.56 +2.3
535,966 - GFF1861 0.56 +1.7
535,966 - GFF1861 0.56 +1.7
535,966 - GFF1861 0.56 +1.3
535,966 - GFF1861 0.56 +1.9
535,966 - GFF1861 0.56 +2.8
535,966 - GFF1861 0.56 +1.8
535,966 - GFF1861 0.56 +2.2
536,332 - +1.0
536,367 + -0.1
536,368 - -0.2
536,368 - +0.1
536,428 + +0.2
536,428 + -1.7
536,428 + -0.3
536,428 + -1.2
536,429 - +0.1
536,429 - -0.6
536,644 + GFF1862 0.22 -0.1
536,644 + GFF1862 0.22 -1.1
536,644 + GFF1862 0.22 -2.3
536,644 + GFF1862 0.22 -0.3
536,644 + GFF1862 0.22 +0.3
536,644 + GFF1862 0.22 -1.5
536,644 + GFF1862 0.22 -0.0
536,644 + GFF1862 0.22 -0.1
536,644 + GFF1862 0.22 +0.8
536,644 + GFF1862 0.22 +1.2
536,645 - GFF1862 0.22 +0.9
536,645 - GFF1862 0.22 +0.3
536,647 + GFF1862 0.23 +0.7
536,648 - GFF1862 0.23 +1.8
536,648 - GFF1862 0.23 +0.9
536,648 - GFF1862 0.23 +0.2
536,648 - GFF1862 0.23 +1.3
536,686 + GFF1862 0.26 +1.3
536,686 + GFF1862 0.26 -0.7
536,686 + GFF1862 0.26 +0.4
536,687 - GFF1862 0.26 +0.7
536,704 + GFF1862 0.28 -0.3
537,070 + GFF1862 0.62 -0.0
537,070 + GFF1862 0.62 +0.2
537,070 + GFF1862 0.62 +0.0
537,310 + GFF1862 0.85 +0.0
537,310 + GFF1862 0.85 +0.7
537,311 - GFF1862 0.85 +1.1

Or see this region's nucleotide sequence