Strain Fitness in Variovorax sp. SCN45 around GFF1814

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1813 and GFF1814 are separated by 17 nucleotidesGFF1814 and GFF1815 overlap by 4 nucleotidesGFF1815 and GFF1816 are separated by 7 nucleotides GFF1813 - Acetylornithine deacetylase-like protein Acry_1162, at 476,788 to 478,014 GFF1813 GFF1814 - 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline (OHCU) decarboxylase (EC 4.1.1.97) / Allantoate amidohydrolase (EC 3.5.3.9), at 478,032 to 479,810 GFF1814 GFF1815 - Uricase (urate oxidase) (EC 1.7.3.3), at 479,807 to 480,769 GFF1815 GFF1816 - Transcriptional regulator, GntR family, at 480,777 to 481,451 GFF1816 Position (kb) 478 479 480Strain fitness (log2 ratio) -3 -2 -1 0 1at 477.302 kb on + strand, within GFF1813at 477.302 kb on + strand, within GFF1813at 477.303 kb on - strand, within GFF1813at 477.320 kb on + strand, within GFF1813at 477.320 kb on + strand, within GFF1813at 477.320 kb on + strand, within GFF1813at 477.321 kb on - strand, within GFF1813at 477.321 kb on - strand, within GFF1813at 477.321 kb on - strand, within GFF1813at 477.452 kb on + strand, within GFF1813at 477.452 kb on + strand, within GFF1813at 477.453 kb on - strand, within GFF1813at 477.453 kb on - strand, within GFF1813at 477.545 kb on + strand, within GFF1813at 477.545 kb on + strand, within GFF1813at 477.545 kb on + strand, within GFF1813at 477.690 kb on - strand, within GFF1813at 477.770 kb on + strand, within GFF1813at 477.813 kb on - strand, within GFF1813at 477.813 kb on - strand, within GFF1813at 477.813 kb on - strand, within GFF1813at 478.004 kb on + strandat 478.004 kb on + strandat 478.531 kb on + strand, within GFF1814at 478.532 kb on - strand, within GFF1814at 478.628 kb on - strand, within GFF1814at 478.628 kb on - strand, within GFF1814at 478.703 kb on + strand, within GFF1814at 478.703 kb on + strand, within GFF1814at 478.704 kb on - strand, within GFF1814at 478.704 kb on - strand, within GFF1814at 478.885 kb on + strand, within GFF1814at 478.885 kb on + strand, within GFF1814at 478.886 kb on - strand, within GFF1814at 479.005 kb on + strand, within GFF1814at 479.005 kb on + strand, within GFF1814at 479.006 kb on - strand, within GFF1814at 479.032 kb on + strand, within GFF1814at 479.032 kb on + strand, within GFF1814at 479.033 kb on - strand, within GFF1814at 479.188 kb on + strand, within GFF1814at 479.473 kb on + strand, within GFF1814at 479.474 kb on - strand, within GFF1814at 479.741 kb on - strandat 479.741 kb on - strandat 479.741 kb on - strandat 479.741 kb on - strandat 480.018 kb on + strand, within GFF1815at 480.018 kb on + strand, within GFF1815at 480.018 kb on + strand, within GFF1815at 480.019 kb on - strand, within GFF1815at 480.045 kb on + strand, within GFF1815at 480.045 kb on + strand, within GFF1815at 480.045 kb on + strand, within GFF1815at 480.045 kb on + strand, within GFF1815at 480.045 kb on + strand, within GFF1815at 480.046 kb on - strand, within GFF1815at 480.046 kb on - strand, within GFF1815at 480.046 kb on - strand, within GFF1815at 480.046 kb on - strand, within GFF1815at 480.117 kb on + strand, within GFF1815at 480.117 kb on + strand, within GFF1815at 480.117 kb on + strand, within GFF1815at 480.118 kb on - strand, within GFF1815at 480.192 kb on + strand, within GFF1815at 480.192 kb on + strand, within GFF1815at 480.196 kb on - strand, within GFF1815at 480.196 kb on - strand, within GFF1815at 480.208 kb on - strand, within GFF1815at 480.223 kb on - strand, within GFF1815at 480.267 kb on + strand, within GFF1815at 480.267 kb on + strand, within GFF1815at 480.268 kb on - strand, within GFF1815at 480.268 kb on - strand, within GFF1815at 480.361 kb on - strand, within GFF1815at 480.534 kb on + strand, within GFF1815at 480.534 kb on + strand, within GFF1815at 480.534 kb on + strand, within GFF1815at 480.534 kb on + strand, within GFF1815at 480.534 kb on + strand, within GFF1815at 480.535 kb on - strand, within GFF1815at 480.535 kb on - strand, within GFF1815at 480.651 kb on + strand, within GFF1815at 480.651 kb on + strand, within GFF1815at 480.651 kb on + strand, within GFF1815at 480.651 kb on + strand, within GFF1815at 480.652 kb on - strand, within GFF1815at 480.652 kb on - strand, within GFF1815at 480.769 kb on + strandat 480.769 kb on + strandat 480.769 kb on + strandat 480.769 kb on + strandat 480.770 kb on - strandat 480.770 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
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477,302 + GFF1813 0.42 -0.4
477,302 + GFF1813 0.42 +0.0
477,303 - GFF1813 0.42 +0.1
477,320 + GFF1813 0.43 +0.3
477,320 + GFF1813 0.43 -0.2
477,320 + GFF1813 0.43 +0.7
477,321 - GFF1813 0.43 -1.5
477,321 - GFF1813 0.43 -0.7
477,321 - GFF1813 0.43 +1.7
477,452 + GFF1813 0.54 -1.1
477,452 + GFF1813 0.54 +0.2
477,453 - GFF1813 0.54 -1.2
477,453 - GFF1813 0.54 +1.4
477,545 + GFF1813 0.62 -2.9
477,545 + GFF1813 0.62 -1.3
477,545 + GFF1813 0.62 -0.5
477,690 - GFF1813 0.74 +0.4
477,770 + GFF1813 0.80 +0.8
477,813 - GFF1813 0.84 +0.4
477,813 - GFF1813 0.84 -0.9
477,813 - GFF1813 0.84 -0.3
478,004 + -0.1
478,004 + -0.2
478,531 + GFF1814 0.28 -0.1
478,532 - GFF1814 0.28 -0.2
478,628 - GFF1814 0.34 +0.8
478,628 - GFF1814 0.34 -0.7
478,703 + GFF1814 0.38 +0.8
478,703 + GFF1814 0.38 -1.3
478,704 - GFF1814 0.38 +0.8
478,704 - GFF1814 0.38 +0.8
478,885 + GFF1814 0.48 +0.1
478,885 + GFF1814 0.48 -0.5
478,886 - GFF1814 0.48 +0.3
479,005 + GFF1814 0.55 -0.3
479,005 + GFF1814 0.55 +0.4
479,006 - GFF1814 0.55 -0.3
479,032 + GFF1814 0.56 +0.1
479,032 + GFF1814 0.56 -0.3
479,033 - GFF1814 0.56 +0.8
479,188 + GFF1814 0.65 +0.7
479,473 + GFF1814 0.81 -0.1
479,474 - GFF1814 0.81 +0.4
479,741 - -1.1
479,741 - +0.4
479,741 - -0.6
479,741 - -0.7
480,018 + GFF1815 0.22 -0.5
480,018 + GFF1815 0.22 +0.2
480,018 + GFF1815 0.22 +0.4
480,019 - GFF1815 0.22 +0.3
480,045 + GFF1815 0.25 -0.4
480,045 + GFF1815 0.25 +0.1
480,045 + GFF1815 0.25 +0.4
480,045 + GFF1815 0.25 -0.3
480,045 + GFF1815 0.25 -1.8
480,046 - GFF1815 0.25 -0.7
480,046 - GFF1815 0.25 -0.0
480,046 - GFF1815 0.25 -0.9
480,046 - GFF1815 0.25 -0.0
480,117 + GFF1815 0.32 -0.3
480,117 + GFF1815 0.32 -1.2
480,117 + GFF1815 0.32 -0.2
480,118 - GFF1815 0.32 +0.8
480,192 + GFF1815 0.40 -0.1
480,192 + GFF1815 0.40 +1.4
480,196 - GFF1815 0.40 +0.4
480,196 - GFF1815 0.40 +0.7
480,208 - GFF1815 0.42 -1.5
480,223 - GFF1815 0.43 +0.4
480,267 + GFF1815 0.48 -1.7
480,267 + GFF1815 0.48 -0.7
480,268 - GFF1815 0.48 -1.7
480,268 - GFF1815 0.48 -0.7
480,361 - GFF1815 0.58 +0.2
480,534 + GFF1815 0.75 -0.1
480,534 + GFF1815 0.75 +0.2
480,534 + GFF1815 0.75 +0.4
480,534 + GFF1815 0.75 -0.3
480,534 + GFF1815 0.75 -0.6
480,535 - GFF1815 0.76 +0.3
480,535 - GFF1815 0.76 +1.4
480,651 + GFF1815 0.88 -0.4
480,651 + GFF1815 0.88 +1.7
480,651 + GFF1815 0.88 -1.3
480,651 + GFF1815 0.88 +1.7
480,652 - GFF1815 0.88 +0.1
480,652 - GFF1815 0.88 -0.2
480,769 + -0.6
480,769 + +0.2
480,769 + -0.5
480,769 + +1.1
480,770 - +0.1
480,770 - -1.3

Or see this region's nucleotide sequence