Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1382 and GFF1383 are separated by 31 nucleotides GFF1383 and GFF1384 are separated by 3 nucleotides
GFF1382 - Short-chain dehydrogenase, associated with 2-hydroxychromene-2-carboxylate isomerase family protein, at 728,334 to 729,131
GFF1382
GFF1383 - Hypothetical protein in cluster with At3g50560-like gene family, at 729,163 to 730,023
GFF1383
GFF1384 - Nitrilotriacetate monooxygenase component A (EC 1.14.13.-), at 730,027 to 731,358
GFF1384
Position (kb) 729
730
731 Strain fitness (log2 ratio) -2
-1
0
1 at 728.173 kb on + strand at 728.174 kb on - strand at 728.272 kb on - strand at 728.272 kb on - strand at 728.290 kb on + strand at 728.291 kb on - strand at 728.314 kb on + strand at 728.314 kb on + strand at 728.314 kb on + strand at 728.315 kb on - strand at 728.315 kb on - strand at 728.315 kb on - strand at 728.316 kb on + strand at 728.316 kb on + strand at 728.316 kb on + strand at 728.317 kb on - strand at 728.317 kb on - strand at 729.230 kb on - strand at 729.230 kb on - strand at 729.230 kb on - strand at 729.262 kb on + strand, within GFF1383 at 729.262 kb on + strand, within GFF1383 at 729.263 kb on - strand, within GFF1383 at 729.263 kb on - strand, within GFF1383 at 729.263 kb on - strand, within GFF1383 at 729.451 kb on + strand, within GFF1383 at 729.451 kb on + strand, within GFF1383 at 729.451 kb on + strand, within GFF1383 at 729.451 kb on + strand, within GFF1383 at 729.451 kb on + strand, within GFF1383 at 729.451 kb on + strand, within GFF1383 at 729.451 kb on + strand, within GFF1383 at 729.452 kb on - strand, within GFF1383 at 729.452 kb on - strand, within GFF1383 at 729.452 kb on - strand, within GFF1383 at 729.452 kb on - strand, within GFF1383 at 729.452 kb on - strand, within GFF1383 at 729.455 kb on - strand, within GFF1383 at 729.455 kb on - strand, within GFF1383 at 729.455 kb on - strand, within GFF1383 at 729.808 kb on + strand, within GFF1383 at 729.808 kb on + strand, within GFF1383 at 729.808 kb on + strand, within GFF1383 at 729.808 kb on + strand, within GFF1383 at 729.808 kb on + strand, within GFF1383 at 729.808 kb on + strand, within GFF1383 at 729.809 kb on - strand, within GFF1383 at 729.809 kb on - strand, within GFF1383 at 729.809 kb on - strand, within GFF1383 at 729.820 kb on + strand, within GFF1383 at 729.820 kb on + strand, within GFF1383 at 729.820 kb on + strand, within GFF1383 at 729.820 kb on + strand, within GFF1383 at 729.820 kb on + strand, within GFF1383 at 729.821 kb on - strand, within GFF1383 at 729.821 kb on - strand, within GFF1383 at 729.821 kb on - strand, within GFF1383 at 729.889 kb on + strand, within GFF1383 at 729.889 kb on + strand, within GFF1383 at 729.890 kb on - strand, within GFF1383 at 729.919 kb on + strand, within GFF1383 at 729.919 kb on + strand, within GFF1383 at 730.300 kb on - strand, within GFF1384 at 730.300 kb on - strand, within GFF1384 at 730.300 kb on - strand, within GFF1384 at 730.486 kb on + strand, within GFF1384 at 730.486 kb on + strand, within GFF1384 at 730.486 kb on + strand, within GFF1384 at 730.487 kb on - strand, within GFF1384 at 730.507 kb on + strand, within GFF1384 at 730.508 kb on - strand, within GFF1384 at 730.650 kb on + strand, within GFF1384 at 730.651 kb on - strand, within GFF1384 at 730.783 kb on + strand, within GFF1384 at 730.924 kb on + strand, within GFF1384 at 730.925 kb on - strand, within GFF1384
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL remove 728,173 + -0.1 728,174 - +0.3 728,272 - +0.3 728,272 - +0.2 728,290 + -0.8 728,291 - -0.4 728,314 + +0.7 728,314 + +0.0 728,314 + +0.4 728,315 - -1.3 728,315 - -1.3 728,315 - +1.3 728,316 + -0.0 728,316 + -0.1 728,316 + +0.0 728,317 - +0.2 728,317 - -1.0 729,230 - -0.2 729,230 - +0.4 729,230 - -0.1 729,262 + GFF1383 0.11 +1.1 729,262 + GFF1383 0.11 -0.1 729,263 - GFF1383 0.12 -1.3 729,263 - GFF1383 0.12 +1.1 729,263 - GFF1383 0.12 +1.0 729,451 + GFF1383 0.33 +1.5 729,451 + GFF1383 0.33 +0.3 729,451 + GFF1383 0.33 +0.0 729,451 + GFF1383 0.33 -0.5 729,451 + GFF1383 0.33 -0.3 729,451 + GFF1383 0.33 +0.9 729,451 + GFF1383 0.33 +1.4 729,452 - GFF1383 0.34 +0.6 729,452 - GFF1383 0.34 +0.3 729,452 - GFF1383 0.34 -1.3 729,452 - GFF1383 0.34 -1.0 729,452 - GFF1383 0.34 -0.6 729,455 - GFF1383 0.34 +0.5 729,455 - GFF1383 0.34 -0.1 729,455 - GFF1383 0.34 -0.7 729,808 + GFF1383 0.75 -0.2 729,808 + GFF1383 0.75 -0.3 729,808 + GFF1383 0.75 +1.0 729,808 + GFF1383 0.75 +0.1 729,808 + GFF1383 0.75 -0.3 729,808 + GFF1383 0.75 +0.6 729,809 - GFF1383 0.75 +0.1 729,809 - GFF1383 0.75 +0.1 729,809 - GFF1383 0.75 +0.8 729,820 + GFF1383 0.76 +0.2 729,820 + GFF1383 0.76 +0.5 729,820 + GFF1383 0.76 -0.6 729,820 + GFF1383 0.76 +0.0 729,820 + GFF1383 0.76 -0.2 729,821 - GFF1383 0.76 -0.0 729,821 - GFF1383 0.76 +0.1 729,821 - GFF1383 0.76 -0.1 729,889 + GFF1383 0.84 -0.6 729,889 + GFF1383 0.84 -1.5 729,890 - GFF1383 0.84 -0.5 729,919 + GFF1383 0.88 +0.2 729,919 + GFF1383 0.88 +1.6 730,300 - GFF1384 0.20 +0.5 730,300 - GFF1384 0.20 +0.1 730,300 - GFF1384 0.20 -1.9 730,486 + GFF1384 0.34 -1.4 730,486 + GFF1384 0.34 -0.3 730,486 + GFF1384 0.34 +0.1 730,487 - GFF1384 0.35 +0.2 730,507 + GFF1384 0.36 -1.1 730,508 - GFF1384 0.36 -0.7 730,650 + GFF1384 0.47 -0.5 730,651 - GFF1384 0.47 -0.2 730,783 + GFF1384 0.57 -0.4 730,924 + GFF1384 0.67 -0.1 730,925 - GFF1384 0.67 -0.0
Or see this region's nucleotide sequence