Strain Fitness in Variovorax sp. SCN45 around GFF67

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
82,876	+		GFF66	0.33	-1.2
83,122	+		GFF66	0.53	-0.7
83,122	+		GFF66	0.53	-1.0
83,191	+		GFF66	0.59	-0.4
83,467	+		GFF66	0.81	+0.4
83,467	+		GFF66	0.81	-0.6
83,467	+		GFF66	0.81	-0.2
83,467	+		GFF66	0.81	-0.4
83,468	-		GFF66	0.81	+0.8
83,468	-		GFF66	0.81	+0.6
83,468	-		GFF66	0.81	-0.8
83,468	-		GFF66	0.81	-0.9
83,564	-		GFF66	0.88	-0.4
83,602	+				-0.6
83,602	+				+0.4
83,602	+				-1.5
83,603	-				-2.1
83,721	+				-0.5
83,721	+				+0.2
83,721	+				-1.0
83,722	-				+0.5
83,763	+				-0.5
83,764	-				-0.0
83,854	-		GFF67	0.12	-0.2
83,877	+		GFF67	0.14	-1.1
83,878	-		GFF67	0.14	-1.4
84,126	+		GFF67	0.34	-0.3
84,126	+		GFF67	0.34	-0.6
84,127	-		GFF67	0.34	-0.3
84,408	+		GFF67	0.57	+0.2
84,408	+		GFF67	0.57	-1.1
84,409	-		GFF67	0.57	-0.3
84,409	-		GFF67	0.57	-0.0
84,861	+				+0.1
85,052	-				+0.3
85,052	-				+0.7
85,052	-				-0.6
85,265	-		GFF68	0.26	+1.4
85,267	+		GFF68	0.27	-0.4
85,360	+		GFF68	0.35	+0.4
85,360	+		GFF68	0.35	-1.4
85,361	-		GFF68	0.35	-0.5
85,420	+		GFF68	0.40	+0.4
85,420	+		GFF68	0.40	-0.7
85,505	-		GFF68	0.48	-0.4
85,582	+		GFF68	0.55	-0.4
85,582	+		GFF68	0.55	-0.2
85,583	-		GFF68	0.55	+2.1
85,583	-		GFF68	0.55	+0.2
85,616	-		GFF68	0.58	-0.1
85,639	+		GFF68	0.60	+0.1
85,672	+		GFF68	0.63	+0.2
85,672	+		GFF68	0.63	-0.4
85,673	-		GFF68	0.63	+0.3
85,673	-		GFF68	0.63	-1.7