Strain Fitness in Variovorax sp. SCN45 around GFF6455

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
32,007	+				+0.3
32,007	+				+0.5
32,007	+				-0.1
32,008	-				-0.6
32,008	-				+0.6
32,008	-				-0.7
32,008	-				+0.1
32,121	+		GFF6454	0.21	-0.1
32,122	-		GFF6454	0.21	+0.2
32,277	+		GFF6454	0.41	-0.4
32,277	+		GFF6454	0.41	-1.1
32,277	+		GFF6454	0.41	-0.5
32,278	-		GFF6454	0.42	-0.8
32,278	-		GFF6454	0.42	-1.8
32,338	-		GFF6454	0.50	-0.0
32,379	+		GFF6454	0.55	+0.3
32,379	+		GFF6454	0.55	-0.2
32,379	+		GFF6454	0.55	-0.1
32,379	+		GFF6454	0.55	-1.2
32,380	-		GFF6454	0.55	+0.1
32,380	-		GFF6454	0.55	+1.2
32,380	-		GFF6454	0.55	-1.9
32,380	-		GFF6454	0.55	-0.0
32,380	-		GFF6454	0.55	+0.6
32,529	+		GFF6454	0.75	-0.9
32,529	+		GFF6454	0.75	+1.3
32,529	+		GFF6454	0.75	-1.5
32,541	+		GFF6454	0.77	-0.7
32,541	+		GFF6454	0.77	-0.0
32,542	-		GFF6454	0.77	+0.1
32,542	-		GFF6454	0.77	-0.6
32,542	-		GFF6454	0.77	-0.5
32,542	-		GFF6454	0.77	-1.2
32,697	+				+0.6
32,698	-				-0.6
32,719	+				-0.1
32,720	-				+0.0
32,720	-				+0.1
32,720	-				-0.3
32,720	-				-0.7
32,787	+				-0.8
32,787	+				+0.0
32,787	+				-0.4
32,787	+				-1.9
32,787	+				-0.0
32,788	-				-0.9
32,788	-				+0.2
32,788	-				-1.7
32,788	-				+0.9
32,788	-				+0.1
32,788	-				+1.3
32,788	-				-0.7
32,804	+				+0.3
32,804	+				+0.2
32,805	-				-0.9
32,805	-				-0.9
32,805	-				-0.7
33,046	+		GFF6455	0.27	-1.9
33,143	-		GFF6455	0.43	-0.8
33,143	-		GFF6455	0.43	+1.4
33,178	+		GFF6455	0.49	-0.5
33,179	-		GFF6455	0.49	-0.3
33,220	+		GFF6455	0.56	+1.1
33,274	+		GFF6455	0.66	-0.9
33,275	-		GFF6455	0.66	-1.6
33,473	-				-0.6
33,473	-				-0.1
33,473	-				+0.1
33,473	-				-0.7
33,473	-				-0.8
33,528	+				-1.1
33,528	+				+0.1
33,528	+				-0.5
33,529	-				-0.4
33,571	-				+1.2
33,571	-				-0.4
33,571	-				-0.5
33,664	+		GFF6456	0.10	-0.9
33,665	-		GFF6456	0.10	-0.7
33,706	-		GFF6456	0.13	-1.4
33,732	+		GFF6456	0.14	-0.8
33,765	+		GFF6456	0.16	+0.6
33,765	+		GFF6456	0.16	+0.3
33,766	-		GFF6456	0.16	-0.1
33,783	+		GFF6456	0.17	+0.6
33,783	+		GFF6456	0.17	-0.7
33,783	+		GFF6456	0.17	+0.6
33,783	+		GFF6456	0.17	+0.1
33,784	-		GFF6456	0.17	+0.1
33,784	-		GFF6456	0.17	-0.1
33,784	-		GFF6456	0.17	-0.2
33,859	-		GFF6456	0.22	+1.1
33,951	+		GFF6456	0.27	-0.8
33,951	+		GFF6456	0.27	-0.2
33,951	+		GFF6456	0.27	-0.4
33,951	+		GFF6456	0.27	-0.5
33,951	+		GFF6456	0.27	+0.1
33,951	+		GFF6456	0.27	+2.1
33,951	+		GFF6456	0.27	-0.5
33,952	-		GFF6456	0.27	-1.1
33,952	-		GFF6456	0.27	-0.7
33,955	-		GFF6456	0.27	+0.9
33,955	-		GFF6456	0.27	+1.6
34,230	+		GFF6456	0.43	-0.5
34,231	-		GFF6456	0.43	-0.7
34,231	-		GFF6456	0.43	-0.4
34,251	+		GFF6456	0.44	-0.4
34,458	+		GFF6456	0.56	-0.1
34,459	-		GFF6456	0.56	-0.5