Strain Fitness in Variovorax sp. SCN45 around GFF6045

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
105,588	+		GFF6044	0.57	+0.7
105,588	+		GFF6044	0.57	+0.1
105,588	+		GFF6044	0.57	+0.0
105,589	-		GFF6044	0.57	-1.1
105,589	-		GFF6044	0.57	-1.0
105,589	-		GFF6044	0.57	-0.3
105,675	+		GFF6044	0.62	+0.2
105,675	+		GFF6044	0.62	-0.4
105,675	+		GFF6044	0.62	-0.5
105,675	+		GFF6044	0.62	+0.8
105,676	-		GFF6044	0.62	-0.7
105,676	-		GFF6044	0.62	-1.0
105,676	-		GFF6044	0.62	-0.8
105,676	-		GFF6044	0.62	-1.1
105,726	+		GFF6044	0.65	-1.8
105,726	+		GFF6044	0.65	-0.1
105,726	+		GFF6044	0.65	+0.2
105,726	+		GFF6044	0.65	-0.2
105,727	-		GFF6044	0.65	-0.5
105,727	-		GFF6044	0.65	+1.5
105,727	-		GFF6044	0.65	-0.9
105,727	-		GFF6044	0.65	-0.3
105,819	+		GFF6044	0.70	+0.2
105,819	+		GFF6044	0.70	-1.3
105,819	+		GFF6044	0.70	-0.2
105,819	+		GFF6044	0.70	-1.7
105,820	-		GFF6044	0.70	+0.9
105,820	-		GFF6044	0.70	-0.4
105,820	-		GFF6044	0.70	+0.3
105,820	-		GFF6044	0.70	+2.8
105,820	-		GFF6044	0.70	-0.5
105,820	-		GFF6044	0.70	-0.7
105,820	-		GFF6044	0.70	+1.3
105,864	+		GFF6044	0.72	-0.4
105,864	+		GFF6044	0.72	+0.6
105,864	+		GFF6044	0.72	+0.1
105,865	-		GFF6044	0.72	-0.1
106,004	+		GFF6044	0.80	+1.8
106,004	+		GFF6044	0.80	+0.8
106,004	+		GFF6044	0.80	-1.2
106,005	-		GFF6044	0.80	-0.8
106,005	-		GFF6044	0.80	+0.5
106,005	-		GFF6044	0.80	-0.1
106,005	-		GFF6044	0.80	-1.4
106,008	+		GFF6044	0.80	-0.3
106,009	-		GFF6044	0.80	-0.5
106,272	+				-0.3
106,272	+				-0.6
106,272	+				+0.8
106,273	-				+0.2
106,489	+		GFF6045	0.25	-0.7
106,489	+		GFF6045	0.25	-0.0
106,489	+		GFF6045	0.25	-1.1
106,489	+		GFF6045	0.25	+0.4
106,489	+		GFF6045	0.25	-1.7
106,489	+		GFF6045	0.25	+0.2
106,489	+		GFF6045	0.25	-0.0
106,490	-		GFF6045	0.26	-0.1
106,490	-		GFF6045	0.26	-0.4
106,504	+		GFF6045	0.32	-0.6
106,504	+		GFF6045	0.32	-0.5
106,504	+		GFF6045	0.32	-0.9
106,505	-		GFF6045	0.32	+0.2
106,505	-		GFF6045	0.32	+1.6
106,570	+		GFF6045	0.59	-0.1
106,570	+		GFF6045	0.59	-0.3
106,570	+		GFF6045	0.59	-0.2
106,570	+		GFF6045	0.59	+0.6
106,570	+		GFF6045	0.59	-1.0
106,570	+		GFF6045	0.59	-0.4
106,570	+		GFF6045	0.59	-2.5
106,570	+		GFF6045	0.59	-0.3
106,570	+		GFF6045	0.59	+0.8
106,570	+		GFF6045	0.59	-0.0
106,570	+		GFF6045	0.59	-0.6
106,571	-		GFF6045	0.60	+0.2
106,571	-		GFF6045	0.60	-0.1
106,571	-		GFF6045	0.60	-0.1
106,571	-		GFF6045	0.60	+1.8
106,571	-		GFF6045	0.60	-0.6
106,571	-		GFF6045	0.60	+0.7
106,571	-		GFF6045	0.60	+0.2
106,571	-		GFF6045	0.60	-0.5
106,663	+				-0.6
106,664	-				+0.3
106,664	-				+0.0
106,664	-				+1.5
106,664	-				+0.2
106,664	-				-0.0
106,908	+		GFF6046	0.62	-0.4
106,908	+		GFF6046	0.62	+0.1
106,908	+		GFF6046	0.62	-0.1
106,909	-		GFF6046	0.62	-1.2
106,909	-		GFF6046	0.62	-0.6
106,909	-		GFF6046	0.62	-0.8
106,909	-		GFF6046	0.62	-0.8
107,057	+				-0.2
107,058	-				+0.2
107,058	-				+0.3
107,058	-				-0.7
107,058	-				+0.1
107,059	+				-0.8
107,059	+				-0.4
107,059	+				-0.6
107,060	-				-0.4
107,060	-				-0.8
107,060	-				-0.9
107,070	+				-0.5
107,071	-				+0.2
107,071	-				+0.8
107,071	-				+0.7
107,089	+				-0.1
107,089	+				-1.0
107,089	+				-0.0
107,090	-				-0.6
107,090	-				+0.5
107,090	-				-0.3
107,090	-				-0.4
107,121	+				+0.1
107,121	+				-0.0
107,122	-				+2.8
107,122	-				-1.5
107,122	-				+0.2
107,234	+		GFF6047	0.28	-0.5
107,234	+		GFF6047	0.28	-1.5
107,234	+		GFF6047	0.28	+0.0
107,235	-		GFF6047	0.28	+1.1
107,352	+		GFF6047	0.47	+2.8
107,352	+		GFF6047	0.47	+1.8
107,661	+				+1.0