Strain Fitness in Variovorax sp. SCN45 around GFF5942

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
161,239	+		GFF5940	0.74	+0.6
161,240	-		GFF5940	0.74	+0.2
161,240	-		GFF5940	0.74	-1.5
161,567	+		GFF5941	0.15	-0.8
161,988	-				-1.4
162,255	+				-0.1
162,255	+				+0.1
162,609	+		GFF5942	0.24	-0.9
162,609	+		GFF5942	0.24	-1.0
162,609	+		GFF5942	0.24	-1.3
162,610	-		GFF5942	0.24	+0.3
162,610	-		GFF5942	0.24	-0.7
162,814	-		GFF5942	0.34	-2.0
162,814	-		GFF5942	0.34	-0.2
163,401	+		GFF5942	0.61	-0.5
163,401	+		GFF5942	0.61	-2.2
163,402	-		GFF5942	0.61	-0.4
163,402	-		GFF5942	0.61	-1.3
163,743	+		GFF5942	0.77	+0.8
163,788	+		GFF5942	0.79	-0.9
163,788	+		GFF5942	0.79	-1.1
164,211	+				+1.9
164,519	+		GFF5943	0.25	-1.2
164,520	-		GFF5943	0.25	-0.9