Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4927 and GFF4928 overlap by 4 nucleotides GFF4928 and GFF4929 overlap by 4 nucleotides
GFF4927 - Citrate-proton symporter, at 18,123 to 19,418
GFF4927
GFF4928 - hypothetical protein, at 19,415 to 21,757
GFF4928
GFF4929 - Aminotransferase, class III, at 21,754 to 23,166
GFF4929
Position (kb) 19
20
21
22 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 18.423 kb on - strand, within GFF4927 at 18.433 kb on + strand, within GFF4927 at 18.433 kb on + strand, within GFF4927 at 18.434 kb on - strand, within GFF4927 at 18.434 kb on - strand, within GFF4927 at 18.434 kb on - strand, within GFF4927 at 18.634 kb on + strand, within GFF4927 at 18.634 kb on + strand, within GFF4927 at 18.635 kb on - strand, within GFF4927 at 18.635 kb on - strand, within GFF4927 at 18.775 kb on + strand, within GFF4927 at 18.775 kb on + strand, within GFF4927 at 18.775 kb on + strand, within GFF4927 at 18.775 kb on + strand, within GFF4927 at 18.775 kb on + strand, within GFF4927 at 18.775 kb on + strand, within GFF4927 at 18.775 kb on + strand, within GFF4927 at 18.775 kb on + strand, within GFF4927 at 18.775 kb on + strand, within GFF4927 at 18.776 kb on - strand, within GFF4927 at 18.776 kb on - strand, within GFF4927 at 18.776 kb on - strand, within GFF4927 at 18.776 kb on - strand, within GFF4927 at 18.776 kb on - strand, within GFF4927 at 18.776 kb on - strand, within GFF4927 at 18.776 kb on - strand, within GFF4927 at 18.776 kb on - strand, within GFF4927 at 18.776 kb on - strand, within GFF4927 at 18.776 kb on - strand, within GFF4927 at 19.153 kb on + strand, within GFF4927 at 19.153 kb on + strand, within GFF4927 at 19.154 kb on - strand, within GFF4927 at 19.154 kb on - strand, within GFF4927 at 19.154 kb on - strand, within GFF4927 at 19.154 kb on - strand, within GFF4927 at 19.288 kb on + strand, within GFF4927 at 19.288 kb on + strand, within GFF4927 at 19.288 kb on + strand, within GFF4927 at 19.288 kb on + strand, within GFF4927 at 19.288 kb on + strand, within GFF4927 at 19.288 kb on + strand, within GFF4927 at 19.288 kb on + strand, within GFF4927 at 19.289 kb on - strand at 19.596 kb on + strand at 19.596 kb on + strand at 19.596 kb on + strand at 19.596 kb on + strand at 19.597 kb on - strand at 19.597 kb on - strand at 19.597 kb on - strand at 19.647 kb on + strand at 19.647 kb on + strand at 19.648 kb on - strand at 19.648 kb on - strand at 19.648 kb on - strand at 19.657 kb on - strand, within GFF4928 at 19.657 kb on - strand, within GFF4928 at 19.908 kb on + strand, within GFF4928 at 19.909 kb on - strand, within GFF4928 at 20.028 kb on + strand, within GFF4928 at 20.029 kb on - strand, within GFF4928 at 20.139 kb on + strand, within GFF4928 at 20.139 kb on + strand, within GFF4928 at 20.140 kb on - strand, within GFF4928 at 20.140 kb on - strand, within GFF4928 at 20.154 kb on + strand, within GFF4928 at 20.154 kb on + strand, within GFF4928 at 20.154 kb on + strand, within GFF4928 at 20.154 kb on + strand, within GFF4928 at 20.154 kb on + strand, within GFF4928 at 20.154 kb on + strand, within GFF4928 at 20.154 kb on + strand, within GFF4928 at 20.154 kb on + strand, within GFF4928 at 20.154 kb on + strand, within GFF4928 at 20.154 kb on + strand, within GFF4928 at 20.154 kb on + strand, within GFF4928 at 20.154 kb on + strand, within GFF4928 at 20.155 kb on - strand, within GFF4928 at 20.155 kb on - strand, within GFF4928 at 20.155 kb on - strand, within GFF4928 at 20.155 kb on - strand, within GFF4928 at 20.155 kb on - strand, within GFF4928 at 20.155 kb on - strand, within GFF4928 at 20.155 kb on - strand, within GFF4928 at 20.155 kb on - strand, within GFF4928 at 20.155 kb on - strand, within GFF4928 at 20.202 kb on + strand, within GFF4928 at 20.203 kb on - strand, within GFF4928 at 20.271 kb on + strand, within GFF4928 at 20.272 kb on - strand, within GFF4928 at 20.272 kb on - strand, within GFF4928 at 20.272 kb on - strand, within GFF4928 at 20.331 kb on + strand, within GFF4928 at 20.331 kb on + strand, within GFF4928 at 20.332 kb on - strand, within GFF4928 at 20.332 kb on - strand, within GFF4928 at 20.409 kb on + strand, within GFF4928 at 20.409 kb on + strand, within GFF4928 at 20.410 kb on - strand, within GFF4928 at 20.460 kb on + strand, within GFF4928 at 20.461 kb on - strand, within GFF4928 at 20.461 kb on - strand, within GFF4928 at 20.461 kb on - strand, within GFF4928 at 20.461 kb on - strand, within GFF4928 at 20.461 kb on - strand, within GFF4928 at 20.484 kb on + strand, within GFF4928 at 20.484 kb on + strand, within GFF4928 at 20.484 kb on + strand, within GFF4928 at 20.484 kb on + strand, within GFF4928 at 20.484 kb on + strand, within GFF4928 at 20.484 kb on + strand, within GFF4928 at 20.485 kb on - strand, within GFF4928 at 20.485 kb on - strand, within GFF4928 at 20.485 kb on - strand, within GFF4928 at 20.490 kb on + strand, within GFF4928 at 20.490 kb on + strand, within GFF4928 at 20.490 kb on + strand, within GFF4928 at 20.490 kb on + strand, within GFF4928 at 20.490 kb on + strand, within GFF4928 at 20.491 kb on - strand, within GFF4928 at 20.491 kb on - strand, within GFF4928 at 20.491 kb on - strand, within GFF4928 at 20.491 kb on - strand, within GFF4928 at 20.491 kb on - strand, within GFF4928 at 20.491 kb on - strand, within GFF4928 at 20.491 kb on - strand, within GFF4928 at 20.491 kb on - strand, within GFF4928 at 20.491 kb on - strand, within GFF4928 at 20.491 kb on - strand, within GFF4928 at 20.499 kb on + strand, within GFF4928 at 20.499 kb on + strand, within GFF4928 at 20.500 kb on - strand, within GFF4928 at 20.500 kb on - strand, within GFF4928 at 20.500 kb on - strand, within GFF4928 at 20.595 kb on + strand, within GFF4928 at 20.683 kb on - strand, within GFF4928 at 20.709 kb on + strand, within GFF4928 at 20.710 kb on - strand, within GFF4928 at 20.727 kb on + strand, within GFF4928 at 20.727 kb on + strand, within GFF4928 at 20.727 kb on + strand, within GFF4928 at 20.727 kb on + strand, within GFF4928 at 20.727 kb on + strand, within GFF4928 at 20.727 kb on + strand, within GFF4928 at 20.728 kb on - strand, within GFF4928 at 20.728 kb on - strand, within GFF4928 at 20.790 kb on + strand, within GFF4928 at 20.790 kb on + strand, within GFF4928 at 20.790 kb on + strand, within GFF4928 at 20.790 kb on + strand, within GFF4928 at 20.791 kb on - strand, within GFF4928 at 20.791 kb on - strand, within GFF4928 at 20.791 kb on - strand, within GFF4928 at 20.791 kb on - strand, within GFF4928 at 20.851 kb on - strand, within GFF4928 at 21.084 kb on + strand, within GFF4928 at 21.084 kb on + strand, within GFF4928 at 21.085 kb on - strand, within GFF4928 at 21.085 kb on - strand, within GFF4928 at 21.085 kb on - strand, within GFF4928 at 21.085 kb on - strand, within GFF4928 at 21.340 kb on - strand, within GFF4928 at 21.378 kb on + strand, within GFF4928 at 21.402 kb on + strand, within GFF4928 at 21.402 kb on + strand, within GFF4928 at 21.402 kb on + strand, within GFF4928 at 21.403 kb on - strand, within GFF4928 at 21.403 kb on - strand, within GFF4928 at 21.507 kb on + strand, within GFF4928 at 21.507 kb on + strand, within GFF4928 at 21.507 kb on + strand, within GFF4928 at 21.507 kb on + strand, within GFF4928 at 21.507 kb on + strand, within GFF4928 at 21.508 kb on - strand, within GFF4928 at 21.508 kb on - strand, within GFF4928 at 21.508 kb on - strand, within GFF4928 at 21.508 kb on - strand, within GFF4928 at 21.621 kb on + strand at 21.621 kb on + strand at 21.621 kb on + strand at 21.621 kb on + strand at 21.622 kb on - strand at 21.622 kb on - strand at 21.920 kb on + strand, within GFF4929 at 21.920 kb on + strand, within GFF4929 at 21.920 kb on + strand, within GFF4929 at 21.920 kb on + strand, within GFF4929 at 21.920 kb on + strand, within GFF4929 at 21.920 kb on + strand, within GFF4929 at 21.920 kb on + strand, within GFF4929 at 21.921 kb on - strand, within GFF4929 at 21.921 kb on - strand, within GFF4929 at 21.921 kb on - strand, within GFF4929 at 21.921 kb on - strand, within GFF4929 at 22.199 kb on + strand, within GFF4929 at 22.199 kb on + strand, within GFF4929 at 22.199 kb on + strand, within GFF4929 at 22.199 kb on + strand, within GFF4929 at 22.200 kb on - strand, within GFF4929 at 22.200 kb on - strand, within GFF4929 at 22.200 kb on - strand, within GFF4929 at 22.200 kb on - strand, within GFF4929 at 22.200 kb on - strand, within GFF4929 at 22.200 kb on - strand, within GFF4929 at 22.200 kb on - strand, within GFF4929 at 22.200 kb on - strand, within GFF4929 at 22.200 kb on - strand, within GFF4929 at 22.200 kb on - strand, within GFF4929 at 22.200 kb on - strand, within GFF4929 at 22.200 kb on - strand, within GFF4929 at 22.283 kb on + strand, within GFF4929 at 22.284 kb on - strand, within GFF4929 at 22.394 kb on + strand, within GFF4929 at 22.395 kb on - strand, within GFF4929 at 22.395 kb on - strand, within GFF4929 at 22.604 kb on + strand, within GFF4929 at 22.604 kb on + strand, within GFF4929 at 22.605 kb on - strand, within GFF4929 at 22.653 kb on - strand, within GFF4929 at 22.653 kb on - strand, within GFF4929 at 22.653 kb on - strand, within GFF4929 at 22.653 kb on - strand, within GFF4929 at 22.653 kb on - strand, within GFF4929 at 22.712 kb on + strand, within GFF4929 at 22.712 kb on + strand, within GFF4929 at 22.712 kb on + strand, within GFF4929 at 22.713 kb on - strand, within GFF4929
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL remove 18,423 - GFF4927 0.23 +0.4 18,433 + GFF4927 0.24 +0.5 18,433 + GFF4927 0.24 -0.0 18,434 - GFF4927 0.24 -0.2 18,434 - GFF4927 0.24 +0.3 18,434 - GFF4927 0.24 +1.0 18,634 + GFF4927 0.39 +0.3 18,634 + GFF4927 0.39 -0.6 18,635 - GFF4927 0.40 +0.4 18,635 - GFF4927 0.40 -1.0 18,775 + GFF4927 0.50 -1.7 18,775 + GFF4927 0.50 +0.1 18,775 + GFF4927 0.50 -0.0 18,775 + GFF4927 0.50 -0.6 18,775 + GFF4927 0.50 +0.3 18,775 + GFF4927 0.50 +0.3 18,775 + GFF4927 0.50 +1.1 18,775 + GFF4927 0.50 +1.4 18,775 + GFF4927 0.50 -0.8 18,776 - GFF4927 0.50 -1.3 18,776 - GFF4927 0.50 -1.0 18,776 - GFF4927 0.50 -0.0 18,776 - GFF4927 0.50 +1.3 18,776 - GFF4927 0.50 -0.1 18,776 - GFF4927 0.50 +0.2 18,776 - GFF4927 0.50 -2.7 18,776 - GFF4927 0.50 +0.1 18,776 - GFF4927 0.50 -0.4 18,776 - GFF4927 0.50 +0.4 19,153 + GFF4927 0.79 -0.2 19,153 + GFF4927 0.79 +0.2 19,154 - GFF4927 0.80 -0.6 19,154 - GFF4927 0.80 -0.8 19,154 - GFF4927 0.80 -0.3 19,154 - GFF4927 0.80 -0.8 19,288 + GFF4927 0.90 +1.6 19,288 + GFF4927 0.90 -0.1 19,288 + GFF4927 0.90 -1.2 19,288 + GFF4927 0.90 -1.5 19,288 + GFF4927 0.90 +0.7 19,288 + GFF4927 0.90 -0.4 19,288 + GFF4927 0.90 +0.4 19,289 - -0.4 19,596 + +0.1 19,596 + +0.6 19,596 + +0.4 19,596 + -0.6 19,597 - -0.0 19,597 - +0.6 19,597 - -0.7 19,647 + +1.9 19,647 + -1.2 19,648 - -0.8 19,648 - +0.2 19,648 - -0.0 19,657 - GFF4928 0.10 -0.1 19,657 - GFF4928 0.10 -0.3 19,908 + GFF4928 0.21 +0.7 19,909 - GFF4928 0.21 +0.1 20,028 + GFF4928 0.26 +2.0 20,029 - GFF4928 0.26 +0.8 20,139 + GFF4928 0.31 -0.0 20,139 + GFF4928 0.31 +0.3 20,140 - GFF4928 0.31 +0.3 20,140 - GFF4928 0.31 -0.6 20,154 + GFF4928 0.32 +0.6 20,154 + GFF4928 0.32 +0.8 20,154 + GFF4928 0.32 -0.3 20,154 + GFF4928 0.32 -1.4 20,154 + GFF4928 0.32 +3.0 20,154 + GFF4928 0.32 +0.6 20,154 + GFF4928 0.32 -0.8 20,154 + GFF4928 0.32 -0.3 20,154 + GFF4928 0.32 -0.6 20,154 + GFF4928 0.32 +0.3 20,154 + GFF4928 0.32 -0.6 20,154 + GFF4928 0.32 -0.5 20,155 - GFF4928 0.32 -0.1 20,155 - GFF4928 0.32 -0.6 20,155 - GFF4928 0.32 -2.2 20,155 - GFF4928 0.32 -2.3 20,155 - GFF4928 0.32 -1.1 20,155 - GFF4928 0.32 -0.3 20,155 - GFF4928 0.32 +0.8 20,155 - GFF4928 0.32 -0.5 20,155 - GFF4928 0.32 +0.1 20,202 + GFF4928 0.34 +0.1 20,203 - GFF4928 0.34 -2.3 20,271 + GFF4928 0.37 +0.8 20,272 - GFF4928 0.37 +1.0 20,272 - GFF4928 0.37 +0.6 20,272 - GFF4928 0.37 +0.8 20,331 + GFF4928 0.39 +0.2 20,331 + GFF4928 0.39 -0.0 20,332 - GFF4928 0.39 -0.8 20,332 - GFF4928 0.39 -0.3 20,409 + GFF4928 0.42 +0.1 20,409 + GFF4928 0.42 +0.3 20,410 - GFF4928 0.42 -0.0 20,460 + GFF4928 0.45 -0.2 20,461 - GFF4928 0.45 -1.2 20,461 - GFF4928 0.45 -0.6 20,461 - GFF4928 0.45 -0.6 20,461 - GFF4928 0.45 +0.2 20,461 - GFF4928 0.45 -1.1 20,484 + GFF4928 0.46 -0.0 20,484 + GFF4928 0.46 -0.2 20,484 + GFF4928 0.46 +0.4 20,484 + GFF4928 0.46 +0.3 20,484 + GFF4928 0.46 -0.2 20,484 + GFF4928 0.46 -0.4 20,485 - GFF4928 0.46 -0.2 20,485 - GFF4928 0.46 -0.7 20,485 - GFF4928 0.46 -0.2 20,490 + GFF4928 0.46 -0.0 20,490 + GFF4928 0.46 -0.2 20,490 + GFF4928 0.46 -0.2 20,490 + GFF4928 0.46 -0.4 20,490 + GFF4928 0.46 +0.9 20,491 - GFF4928 0.46 +1.4 20,491 - GFF4928 0.46 +0.7 20,491 - GFF4928 0.46 +1.6 20,491 - GFF4928 0.46 +0.6 20,491 - GFF4928 0.46 -0.5 20,491 - GFF4928 0.46 -0.7 20,491 - GFF4928 0.46 -0.1 20,491 - GFF4928 0.46 -0.4 20,491 - GFF4928 0.46 +0.1 20,491 - GFF4928 0.46 -0.9 20,499 + GFF4928 0.46 -0.1 20,499 + GFF4928 0.46 -1.7 20,500 - GFF4928 0.46 -1.0 20,500 - GFF4928 0.46 +0.1 20,500 - GFF4928 0.46 +0.7 20,595 + GFF4928 0.50 -1.6 20,683 - GFF4928 0.54 +2.0 20,709 + GFF4928 0.55 +0.2 20,710 - GFF4928 0.55 -0.6 20,727 + GFF4928 0.56 -0.8 20,727 + GFF4928 0.56 +0.6 20,727 + GFF4928 0.56 -0.1 20,727 + GFF4928 0.56 -0.1 20,727 + GFF4928 0.56 -1.0 20,727 + GFF4928 0.56 +0.3 20,728 - GFF4928 0.56 -0.0 20,728 - GFF4928 0.56 +0.3 20,790 + GFF4928 0.59 -1.0 20,790 + GFF4928 0.59 +0.5 20,790 + GFF4928 0.59 +0.0 20,790 + GFF4928 0.59 -0.2 20,791 - GFF4928 0.59 -0.4 20,791 - GFF4928 0.59 +0.1 20,791 - GFF4928 0.59 +0.7 20,791 - GFF4928 0.59 +0.3 20,851 - GFF4928 0.61 -0.1 21,084 + GFF4928 0.71 +1.0 21,084 + GFF4928 0.71 +2.0 21,085 - GFF4928 0.71 +0.1 21,085 - GFF4928 0.71 +0.9 21,085 - GFF4928 0.71 +0.0 21,085 - GFF4928 0.71 -0.4 21,340 - GFF4928 0.82 +0.3 21,378 + GFF4928 0.84 -0.8 21,402 + GFF4928 0.85 -0.5 21,402 + GFF4928 0.85 -0.8 21,402 + GFF4928 0.85 +0.9 21,403 - GFF4928 0.85 -0.0 21,403 - GFF4928 0.85 -0.1 21,507 + GFF4928 0.89 +0.4 21,507 + GFF4928 0.89 -0.1 21,507 + GFF4928 0.89 +0.4 21,507 + GFF4928 0.89 +0.2 21,507 + GFF4928 0.89 -0.1 21,508 - GFF4928 0.89 +0.7 21,508 - GFF4928 0.89 -0.3 21,508 - GFF4928 0.89 -0.3 21,508 - GFF4928 0.89 +0.7 21,621 + -0.6 21,621 + +0.1 21,621 + -0.2 21,621 + +0.1 21,622 - +0.1 21,622 - -0.6 21,920 + GFF4929 0.12 +1.2 21,920 + GFF4929 0.12 -1.1 21,920 + GFF4929 0.12 -0.3 21,920 + GFF4929 0.12 +0.2 21,920 + GFF4929 0.12 -0.8 21,920 + GFF4929 0.12 -0.1 21,920 + GFF4929 0.12 -1.0 21,921 - GFF4929 0.12 -2.2 21,921 - GFF4929 0.12 -0.0 21,921 - GFF4929 0.12 -0.3 21,921 - GFF4929 0.12 +0.1 22,199 + GFF4929 0.31 -0.3 22,199 + GFF4929 0.31 -0.0 22,199 + GFF4929 0.31 +0.1 22,199 + GFF4929 0.31 +0.1 22,200 - GFF4929 0.32 -0.2 22,200 - GFF4929 0.32 +0.1 22,200 - GFF4929 0.32 -0.1 22,200 - GFF4929 0.32 -0.8 22,200 - GFF4929 0.32 -0.8 22,200 - GFF4929 0.32 +0.4 22,200 - GFF4929 0.32 -0.6 22,200 - GFF4929 0.32 +1.4 22,200 - GFF4929 0.32 +0.4 22,200 - GFF4929 0.32 -0.2 22,200 - GFF4929 0.32 +0.3 22,200 - GFF4929 0.32 +0.5 22,283 + GFF4929 0.37 -2.5 22,284 - GFF4929 0.38 -0.7 22,394 + GFF4929 0.45 +0.0 22,395 - GFF4929 0.45 +0.4 22,395 - GFF4929 0.45 -0.2 22,604 + GFF4929 0.60 +0.6 22,604 + GFF4929 0.60 -1.5 22,605 - GFF4929 0.60 +0.2 22,653 - GFF4929 0.64 -0.3 22,653 - GFF4929 0.64 -0.0 22,653 - GFF4929 0.64 +0.4 22,653 - GFF4929 0.64 -0.7 22,653 - GFF4929 0.64 -0.5 22,712 + GFF4929 0.68 -0.7 22,712 + GFF4929 0.68 -1.3 22,712 + GFF4929 0.68 -0.1 22,713 - GFF4929 0.68 +0.0
Or see this region's nucleotide sequence