Strain Fitness in Variovorax sp. SCN45 around GFF4644

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
102	+				-0.0
102	+				-0.3
102	+				-0.2
102	+				-0.3
103	-				-0.6
103	-				+0.6
103	-				-0.7
103	-				-0.5
103	-				-1.2
103	-				+0.2
103	-				-0.1
103	-				+1.1
103	-				+0.8
103	-				-0.5
103	-				-0.4
103	-				-0.5
103	-				-0.6
103	-				+0.7
238	-		GFF4644	0.56	-2.2
238	-		GFF4644	0.56	-0.7
238	-		GFF4644	0.56	-0.2
383	+				-0.1
384	-				-0.3
384	-				-0.4
384	-				-0.5
392	+				+0.1
428	+				+0.8
428	+				+0.8
429	-				-1.0
435	+				-0.4
435	+				-0.2
435	+				-0.7
436	-				-0.3
436	-				-0.5
436	-				-0.5
477	+				+0.5
477	+				+0.5
478	-				-0.3
478	-				-0.5
478	-				-0.8
478	-				+1.5
505	+				-0.5
505	+				-0.3
505	+				+0.1
506	-				-1.1
536	-				-0.3
600	+				+0.1
601	-				+0.3
757	+				-0.3
757	+				-1.6
757	+				+0.2
757	+				-0.1
867	+				+1.1
867	+				-0.5
867	+				+0.4
867	+				-0.2
868	-				-0.5
868	-				-0.5
868	-				-0.5
1,087	-		GFF4645	0.19	+0.8
1,176	+		GFF4645	0.24	-0.7
1,176	+		GFF4645	0.24	+0.1
1,176	+		GFF4645	0.24	-0.6
1,177	-		GFF4645	0.24	-0.2
1,177	-		GFF4645	0.24	-1.0
1,177	-		GFF4645	0.24	-0.9
1,201	-		GFF4645	0.26	+0.1