Strain Fitness in Variovorax sp. SCN45 around GFF3890

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
87,904	+		GFF3888	0.80	-0.9
87,905	-		GFF3888	0.80	-2.2
87,905	-		GFF3888	0.80	-0.9
88,178	+				-0.6
88,178	+				-0.9
88,178	+				-0.1
88,178	+				+0.7
88,178	+				-0.4
88,179	-				+0.2
88,179	-				-1.7
88,179	-				-0.2
88,179	-				+0.2
88,179	-				+1.9
88,179	-				+0.4
88,179	-				-0.2
88,179	-				+0.1
88,179	-				-0.4
88,285	+		GFF3889	0.19	-2.4
88,285	+		GFF3889	0.19	-0.4
88,285	+		GFF3889	0.19	-0.3
88,286	-		GFF3889	0.19	+0.1
88,286	-		GFF3889	0.19	-0.9
88,481	-		GFF3889	0.49	-1.7
88,594	+		GFF3889	0.66	-1.6
88,595	-		GFF3889	0.67	-0.9
88,719	-		GFF3889	0.85	-1.4
89,267	+		GFF3890	0.31	-0.6
89,268	-		GFF3890	0.31	-1.4
89,459	+		GFF3890	0.44	-1.4
89,460	-		GFF3890	0.44	-1.4
89,516	+		GFF3890	0.48	-1.7
89,516	+		GFF3890	0.48	-2.0
89,517	-		GFF3890	0.48	-2.1
89,517	-		GFF3890	0.48	-1.3
89,645	+		GFF3890	0.57	-0.6
89,646	-		GFF3890	0.57	-1.7
89,646	-		GFF3890	0.57	-2.5
89,646	-		GFF3890	0.57	-1.3
89,646	-		GFF3890	0.57	-1.6
90,032	+		GFF3890	0.84	-1.1
90,090	+		GFF3890	0.89	-1.9
90,091	-		GFF3890	0.89	+0.1
90,176	+				-0.6
90,177	-				-0.9
90,236	+				-0.9
90,237	-				-0.3
90,304	-				+0.5
90,304	-				-0.9
90,587	-		GFF3891	0.30	+0.0
90,612	+		GFF3891	0.33	-0.2
90,612	+		GFF3891	0.33	-0.4
90,612	+		GFF3891	0.33	-0.5
90,612	+		GFF3891	0.33	-0.3
90,612	+		GFF3891	0.33	-0.7
90,612	+		GFF3891	0.33	-0.4
90,612	+		GFF3891	0.33	+0.3
90,612	+		GFF3891	0.33	+0.3
90,613	-		GFF3891	0.33	+0.1
90,613	-		GFF3891	0.33	-0.0
90,613	-		GFF3891	0.33	-1.3
90,613	-		GFF3891	0.33	+0.1
90,613	-		GFF3891	0.33	-0.3
90,613	-		GFF3891	0.33	+0.1
90,613	-		GFF3891	0.33	+0.3
90,613	-		GFF3891	0.33	-0.1
90,960	+		GFF3891	0.70	-0.4
90,961	-		GFF3891	0.70	-0.9
90,961	-		GFF3891	0.70	-0.9
90,961	-		GFF3891	0.70	-0.1
90,996	+		GFF3891	0.73	-0.2
90,996	+		GFF3891	0.73	+0.3
90,996	+		GFF3891	0.73	-0.8
90,996	+		GFF3891	0.73	-0.3
90,996	+		GFF3891	0.73	-1.1
90,996	+		GFF3891	0.73	-0.0
90,996	+		GFF3891	0.73	-0.7
90,996	+		GFF3891	0.73	-0.1
90,997	-		GFF3891	0.74	+0.6
90,997	-		GFF3891	0.74	+0.1
90,997	-		GFF3891	0.74	-1.8
90,997	-		GFF3891	0.74	-0.3
90,997	-		GFF3891	0.74	-0.8
91,068	+		GFF3891	0.81	-0.6