Strain Fitness in Variovorax sp. SCN45 around GFF3311

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3310 and GFF3311 are separated by 85 nucleotidesGFF3311 and GFF3312 are separated by 4 nucleotides GFF3310 - Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-), at 135,600 to 138,002 GFF3310 GFF3311 - FIG00349859: hypothetical protein, at 138,088 to 138,693 GFF3311 GFF3312 - Sensory histidine kinase CreC of two-component signal transduction system CreBC, at 138,698 to 140,149 GFF3312 Position (kb) 138 139Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 137.127 kb on + strand, within GFF3310at 137.127 kb on + strand, within GFF3310at 137.127 kb on + strand, within GFF3310at 137.128 kb on - strand, within GFF3310at 137.128 kb on - strand, within GFF3310at 137.187 kb on + strand, within GFF3310at 137.187 kb on + strand, within GFF3310at 137.187 kb on + strand, within GFF3310at 137.187 kb on + strand, within GFF3310at 137.187 kb on + strand, within GFF3310at 137.187 kb on + strand, within GFF3310at 137.188 kb on - strand, within GFF3310at 137.188 kb on - strand, within GFF3310at 137.188 kb on - strand, within GFF3310at 137.188 kb on - strand, within GFF3310at 137.188 kb on - strand, within GFF3310at 137.275 kb on - strand, within GFF3310at 137.275 kb on - strand, within GFF3310at 137.275 kb on - strand, within GFF3310at 137.424 kb on + strand, within GFF3310at 137.425 kb on - strand, within GFF3310at 137.583 kb on + strand, within GFF3310at 137.584 kb on - strand, within GFF3310at 137.611 kb on - strand, within GFF3310at 137.697 kb on + strand, within GFF3310at 137.698 kb on - strand, within GFF3310at 137.698 kb on - strand, within GFF3310at 137.769 kb on + strandat 137.769 kb on + strandat 137.769 kb on + strandat 137.769 kb on + strandat 137.770 kb on - strandat 137.770 kb on - strandat 137.770 kb on - strandat 137.770 kb on - strandat 137.770 kb on - strandat 137.851 kb on - strandat 137.851 kb on - strandat 137.851 kb on - strandat 137.851 kb on - strandat 137.851 kb on - strandat 137.851 kb on - strandat 138.040 kb on + strandat 138.040 kb on + strandat 138.040 kb on + strandat 138.040 kb on + strandat 138.041 kb on - strandat 138.041 kb on - strandat 138.099 kb on + strandat 138.100 kb on - strandat 138.130 kb on + strandat 138.130 kb on + strandat 138.130 kb on + strandat 138.130 kb on + strandat 138.130 kb on + strandat 138.130 kb on + strandat 138.130 kb on + strandat 138.130 kb on + strandat 138.130 kb on + strandat 138.130 kb on + strandat 138.131 kb on - strandat 138.131 kb on - strandat 138.131 kb on - strandat 138.131 kb on - strandat 138.131 kb on - strandat 138.131 kb on - strandat 138.131 kb on - strandat 138.131 kb on - strandat 138.232 kb on + strand, within GFF3311at 138.232 kb on + strand, within GFF3311at 138.568 kb on + strand, within GFF3311at 138.568 kb on + strand, within GFF3311at 138.568 kb on + strand, within GFF3311at 138.568 kb on + strand, within GFF3311at 138.568 kb on + strand, within GFF3311at 138.569 kb on - strand, within GFF3311at 138.569 kb on - strand, within GFF3311at 138.569 kb on - strand, within GFF3311at 138.569 kb on - strand, within GFF3311at 138.569 kb on - strand, within GFF3311at 138.625 kb on + strand, within GFF3311at 138.625 kb on + strand, within GFF3311at 138.625 kb on + strand, within GFF3311at 138.625 kb on + strand, within GFF3311at 138.625 kb on + strand, within GFF3311at 138.625 kb on + strand, within GFF3311at 138.625 kb on + strand, within GFF3311at 138.626 kb on - strand, within GFF3311at 138.626 kb on - strand, within GFF3311at 138.670 kb on + strandat 138.670 kb on + strandat 138.671 kb on - strandat 138.691 kb on + strandat 138.692 kb on - strandat 138.692 kb on - strandat 138.692 kb on - strandat 138.692 kb on - strandat 138.870 kb on + strand, within GFF3312at 138.870 kb on + strand, within GFF3312at 138.871 kb on - strand, within GFF3312at 138.871 kb on - strand, within GFF3312at 138.871 kb on - strand, within GFF3312at 138.871 kb on - strand, within GFF3312at 138.871 kb on - strand, within GFF3312at 138.900 kb on + strand, within GFF3312at 138.901 kb on - strand, within GFF3312at 139.374 kb on + strand, within GFF3312at 139.374 kb on + strand, within GFF3312at 139.375 kb on - strand, within GFF3312at 139.375 kb on - strand, within GFF3312at 139.375 kb on - strand, within GFF3312at 139.386 kb on + strand, within GFF3312at 139.386 kb on + strand, within GFF3312at 139.386 kb on + strand, within GFF3312at 139.386 kb on + strand, within GFF3312at 139.387 kb on - strand, within GFF3312at 139.387 kb on - strand, within GFF3312at 139.387 kb on - strand, within GFF3312at 139.387 kb on - strand, within GFF3312at 139.387 kb on - strand, within GFF3312at 139.504 kb on - strand, within GFF3312at 139.688 kb on + strand, within GFF3312

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
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137,127 + GFF3310 0.64 -0.9
137,127 + GFF3310 0.64 -0.2
137,127 + GFF3310 0.64 -0.1
137,128 - GFF3310 0.64 -0.7
137,128 - GFF3310 0.64 +0.3
137,187 + GFF3310 0.66 -0.0
137,187 + GFF3310 0.66 +0.8
137,187 + GFF3310 0.66 -0.5
137,187 + GFF3310 0.66 -1.1
137,187 + GFF3310 0.66 -0.6
137,187 + GFF3310 0.66 -0.2
137,188 - GFF3310 0.66 -0.3
137,188 - GFF3310 0.66 -0.1
137,188 - GFF3310 0.66 -0.6
137,188 - GFF3310 0.66 -0.7
137,188 - GFF3310 0.66 +1.1
137,275 - GFF3310 0.70 +0.8
137,275 - GFF3310 0.70 -1.0
137,275 - GFF3310 0.70 -1.2
137,424 + GFF3310 0.76 -0.3
137,425 - GFF3310 0.76 +0.3
137,583 + GFF3310 0.83 +2.1
137,584 - GFF3310 0.83 -0.4
137,611 - GFF3310 0.84 -2.6
137,697 + GFF3310 0.87 -0.1
137,698 - GFF3310 0.87 +0.5
137,698 - GFF3310 0.87 -0.3
137,769 + -0.1
137,769 + -0.3
137,769 + -0.1
137,769 + -0.2
137,770 - +0.7
137,770 - -0.4
137,770 - -0.1
137,770 - -0.3
137,770 - -0.2
137,851 - -1.6
137,851 - -0.7
137,851 - -0.4
137,851 - -1.4
137,851 - -0.3
137,851 - +0.3
138,040 + +0.3
138,040 + -1.0
138,040 + -1.0
138,040 + -0.1
138,041 - +0.1
138,041 - -0.7
138,099 + -0.2
138,100 - +1.2
138,130 + -0.1
138,130 + -0.1
138,130 + +0.2
138,130 + +0.1
138,130 + +1.3
138,130 + -0.4
138,130 + -1.9
138,130 + +0.1
138,130 + -0.1
138,130 + -1.2
138,131 - +1.8
138,131 - -0.2
138,131 - +0.0
138,131 - -1.4
138,131 - +0.3
138,131 - -0.2
138,131 - -0.6
138,131 - -0.2
138,232 + GFF3311 0.24 -0.4
138,232 + GFF3311 0.24 +0.1
138,568 + GFF3311 0.79 -1.8
138,568 + GFF3311 0.79 -0.5
138,568 + GFF3311 0.79 +1.1
138,568 + GFF3311 0.79 -0.8
138,568 + GFF3311 0.79 +0.0
138,569 - GFF3311 0.79 -0.1
138,569 - GFF3311 0.79 -0.3
138,569 - GFF3311 0.79 -0.2
138,569 - GFF3311 0.79 -1.0
138,569 - GFF3311 0.79 -1.7
138,625 + GFF3311 0.89 -0.5
138,625 + GFF3311 0.89 +0.2
138,625 + GFF3311 0.89 -0.8
138,625 + GFF3311 0.89 -0.6
138,625 + GFF3311 0.89 +2.1
138,625 + GFF3311 0.89 +1.1
138,625 + GFF3311 0.89 -0.5
138,626 - GFF3311 0.89 +0.3
138,626 - GFF3311 0.89 +0.4
138,670 + -0.0
138,670 + -0.6
138,671 - +0.3
138,691 + +0.3
138,692 - -1.2
138,692 - -0.6
138,692 - +0.9
138,692 - +0.1
138,870 + GFF3312 0.12 -0.2
138,870 + GFF3312 0.12 +1.4
138,871 - GFF3312 0.12 +0.7
138,871 - GFF3312 0.12 -0.9
138,871 - GFF3312 0.12 -0.1
138,871 - GFF3312 0.12 +0.1
138,871 - GFF3312 0.12 +0.2
138,900 + GFF3312 0.14 +0.7
138,901 - GFF3312 0.14 -0.2
139,374 + GFF3312 0.47 +0.5
139,374 + GFF3312 0.47 -2.8
139,375 - GFF3312 0.47 -1.4
139,375 - GFF3312 0.47 -0.5
139,375 - GFF3312 0.47 -0.0
139,386 + GFF3312 0.47 -0.5
139,386 + GFF3312 0.47 -0.4
139,386 + GFF3312 0.47 -0.1
139,386 + GFF3312 0.47 +0.2
139,387 - GFF3312 0.47 +0.4
139,387 - GFF3312 0.47 -0.6
139,387 - GFF3312 0.47 +0.4
139,387 - GFF3312 0.47 -0.1
139,387 - GFF3312 0.47 -0.7
139,504 - GFF3312 0.56 -0.2
139,688 + GFF3312 0.68 -1.9

Or see this region's nucleotide sequence