Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2528 and GFF2529 overlap by 1 nucleotides GFF2529 and GFF2530 are separated by 82 nucleotides GFF2530 and GFF2531 are separated by 238 nucleotides GFF2531 and GFF2532 are separated by 22 nucleotides
GFF2528 - ABC transporter, ATP-binding protein PA3838, at 587,794 to 588,588
GFF2528
GFF2529 - ABC transporter, permease protein PA3837, at 588,588 to 589,484
GFF2529
GFF2530 - ABC transporter, substrate-binding protein PA3836, at 589,567 to 590,511
GFF2530
GFF2531 - Transcriptional regulator, AsnC family, at 590,750 to 591,226
GFF2531
GFF2532 - Potassium efflux system KefA protein / Small-conductance mechanosensitive channel, at 591,249 to 593,714
GFF2532
Position (kb) 589
590
591 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 588.628 kb on + strand at 588.628 kb on + strand at 588.629 kb on - strand at 588.629 kb on - strand at 588.629 kb on - strand at 588.629 kb on - strand at 588.739 kb on + strand, within GFF2529 at 588.739 kb on + strand, within GFF2529 at 589.189 kb on + strand, within GFF2529 at 589.189 kb on + strand, within GFF2529 at 589.189 kb on + strand, within GFF2529 at 589.189 kb on + strand, within GFF2529 at 589.189 kb on + strand, within GFF2529 at 589.189 kb on + strand, within GFF2529 at 589.190 kb on - strand, within GFF2529 at 589.190 kb on - strand, within GFF2529 at 589.190 kb on - strand, within GFF2529 at 589.190 kb on - strand, within GFF2529 at 589.190 kb on - strand, within GFF2529 at 589.190 kb on - strand, within GFF2529 at 589.190 kb on - strand, within GFF2529 at 589.190 kb on - strand, within GFF2529 at 589.190 kb on - strand, within GFF2529 at 589.413 kb on + strand at 589.413 kb on + strand at 589.413 kb on + strand at 589.413 kb on + strand at 589.413 kb on + strand at 589.413 kb on + strand at 589.413 kb on + strand at 589.413 kb on + strand at 589.413 kb on + strand at 589.414 kb on - strand at 589.414 kb on - strand at 589.414 kb on - strand at 589.414 kb on - strand at 589.414 kb on - strand at 589.440 kb on + strand at 589.441 kb on - strand at 589.568 kb on + strand at 589.568 kb on + strand at 589.568 kb on + strand at 589.568 kb on + strand at 589.568 kb on + strand at 589.569 kb on - strand at 589.569 kb on - strand at 589.569 kb on - strand at 589.569 kb on - strand at 589.754 kb on + strand, within GFF2530 at 589.754 kb on + strand, within GFF2530 at 589.754 kb on + strand, within GFF2530 at 589.755 kb on - strand, within GFF2530 at 589.755 kb on - strand, within GFF2530 at 589.755 kb on - strand, within GFF2530 at 589.755 kb on - strand, within GFF2530 at 589.854 kb on - strand, within GFF2530 at 589.889 kb on + strand, within GFF2530 at 589.889 kb on + strand, within GFF2530 at 589.889 kb on + strand, within GFF2530 at 589.889 kb on + strand, within GFF2530 at 589.889 kb on + strand, within GFF2530 at 589.889 kb on + strand, within GFF2530 at 589.890 kb on - strand, within GFF2530 at 589.890 kb on - strand, within GFF2530 at 589.890 kb on - strand, within GFF2530 at 589.890 kb on - strand, within GFF2530 at 589.890 kb on - strand, within GFF2530 at 589.890 kb on - strand, within GFF2530 at 590.041 kb on + strand, within GFF2530 at 590.042 kb on + strand, within GFF2530 at 590.042 kb on + strand, within GFF2530 at 590.042 kb on + strand, within GFF2530 at 590.042 kb on + strand, within GFF2530 at 590.042 kb on + strand, within GFF2530 at 590.042 kb on + strand, within GFF2530 at 590.042 kb on + strand, within GFF2530 at 590.043 kb on - strand, within GFF2530 at 590.043 kb on - strand, within GFF2530 at 590.043 kb on - strand, within GFF2530 at 590.043 kb on - strand, within GFF2530 at 590.043 kb on - strand, within GFF2530 at 590.043 kb on - strand, within GFF2530 at 590.043 kb on - strand, within GFF2530 at 590.043 kb on - strand, within GFF2530 at 590.043 kb on - strand, within GFF2530 at 590.043 kb on - strand, within GFF2530 at 590.043 kb on - strand, within GFF2530 at 590.043 kb on - strand, within GFF2530 at 590.198 kb on + strand, within GFF2530 at 590.198 kb on + strand, within GFF2530 at 590.199 kb on - strand, within GFF2530 at 590.199 kb on - strand, within GFF2530 at 590.199 kb on - strand, within GFF2530 at 590.199 kb on - strand, within GFF2530 at 590.199 kb on - strand, within GFF2530 at 590.288 kb on + strand, within GFF2530 at 590.289 kb on - strand, within GFF2530 at 590.289 kb on - strand, within GFF2530 at 590.289 kb on - strand, within GFF2530 at 590.289 kb on - strand, within GFF2530 at 590.289 kb on - strand, within GFF2530 at 590.289 kb on - strand, within GFF2530 at 590.289 kb on - strand, within GFF2530 at 590.289 kb on - strand, within GFF2530 at 590.289 kb on - strand, within GFF2530 at 590.339 kb on + strand, within GFF2530 at 590.339 kb on + strand, within GFF2530 at 590.339 kb on + strand, within GFF2530 at 590.339 kb on + strand, within GFF2530 at 590.339 kb on + strand, within GFF2530 at 590.339 kb on + strand, within GFF2530 at 590.339 kb on + strand, within GFF2530 at 590.339 kb on + strand, within GFF2530 at 590.340 kb on - strand, within GFF2530 at 590.340 kb on - strand, within GFF2530 at 590.340 kb on - strand, within GFF2530 at 590.340 kb on - strand, within GFF2530 at 590.340 kb on - strand, within GFF2530 at 590.370 kb on - strand, within GFF2530 at 590.549 kb on + strand at 590.549 kb on + strand at 590.549 kb on + strand at 590.549 kb on + strand at 590.549 kb on + strand at 590.549 kb on + strand at 590.549 kb on + strand at 590.549 kb on + strand at 590.549 kb on + strand at 590.549 kb on + strand at 590.549 kb on + strand at 590.549 kb on + strand at 590.550 kb on - strand at 590.550 kb on - strand at 590.550 kb on - strand at 590.550 kb on - strand at 590.550 kb on - strand at 590.550 kb on - strand at 590.550 kb on - strand at 590.550 kb on - strand at 590.550 kb on - strand at 590.659 kb on + strand at 590.660 kb on - strand at 590.660 kb on - strand at 590.660 kb on - strand at 590.660 kb on - strand at 590.660 kb on - strand at 590.660 kb on - strand at 590.667 kb on - strand at 590.667 kb on - strand at 590.679 kb on + strand at 590.680 kb on - strand at 590.680 kb on - strand at 590.918 kb on + strand, within GFF2531 at 590.918 kb on + strand, within GFF2531 at 590.918 kb on + strand, within GFF2531 at 591.056 kb on + strand, within GFF2531 at 591.056 kb on + strand, within GFF2531 at 591.056 kb on + strand, within GFF2531 at 591.056 kb on + strand, within GFF2531 at 591.056 kb on + strand, within GFF2531 at 591.056 kb on + strand, within GFF2531 at 591.057 kb on - strand, within GFF2531 at 591.057 kb on - strand, within GFF2531 at 591.057 kb on - strand, within GFF2531 at 591.057 kb on - strand, within GFF2531 at 591.057 kb on - strand, within GFF2531 at 591.057 kb on - strand, within GFF2531 at 591.080 kb on + strand, within GFF2531 at 591.080 kb on + strand, within GFF2531 at 591.080 kb on + strand, within GFF2531 at 591.080 kb on + strand, within GFF2531 at 591.080 kb on + strand, within GFF2531 at 591.080 kb on + strand, within GFF2531 at 591.080 kb on + strand, within GFF2531 at 591.080 kb on + strand, within GFF2531 at 591.081 kb on - strand, within GFF2531 at 591.081 kb on - strand, within GFF2531 at 591.081 kb on - strand, within GFF2531 at 591.081 kb on - strand, within GFF2531 at 591.081 kb on - strand, within GFF2531 at 591.433 kb on + strand at 591.433 kb on + strand at 591.433 kb on + strand at 591.434 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL remove 588,628 + +1.9 588,628 + +0.1 588,629 - -0.9 588,629 - -1.2 588,629 - -1.6 588,629 - -0.1 588,739 + GFF2529 0.17 +0.1 588,739 + GFF2529 0.17 -0.4 589,189 + GFF2529 0.67 +0.9 589,189 + GFF2529 0.67 +0.3 589,189 + GFF2529 0.67 -0.2 589,189 + GFF2529 0.67 -0.0 589,189 + GFF2529 0.67 +0.7 589,189 + GFF2529 0.67 -0.1 589,190 - GFF2529 0.67 -0.6 589,190 - GFF2529 0.67 -1.4 589,190 - GFF2529 0.67 -0.1 589,190 - GFF2529 0.67 -0.2 589,190 - GFF2529 0.67 -0.5 589,190 - GFF2529 0.67 +0.3 589,190 - GFF2529 0.67 -0.3 589,190 - GFF2529 0.67 +0.6 589,190 - GFF2529 0.67 -0.1 589,413 + -0.0 589,413 + -0.1 589,413 + -0.4 589,413 + +0.8 589,413 + -0.7 589,413 + -0.5 589,413 + -1.6 589,413 + -0.6 589,413 + -1.4 589,414 - -0.4 589,414 - +1.2 589,414 - -0.5 589,414 - -1.6 589,414 - +0.1 589,440 + -1.3 589,441 - -0.9 589,568 + +0.3 589,568 + +0.5 589,568 + +0.0 589,568 + +2.2 589,568 + +0.1 589,569 - +0.5 589,569 - -0.6 589,569 - +0.2 589,569 - +0.5 589,754 + GFF2530 0.20 -0.6 589,754 + GFF2530 0.20 -0.4 589,754 + GFF2530 0.20 +0.2 589,755 - GFF2530 0.20 -0.5 589,755 - GFF2530 0.20 -0.5 589,755 - GFF2530 0.20 -0.9 589,755 - GFF2530 0.20 -0.5 589,854 - GFF2530 0.30 +0.7 589,889 + GFF2530 0.34 +0.3 589,889 + GFF2530 0.34 +2.3 589,889 + GFF2530 0.34 -0.2 589,889 + GFF2530 0.34 -0.2 589,889 + GFF2530 0.34 -0.3 589,889 + GFF2530 0.34 +1.9 589,890 - GFF2530 0.34 -0.2 589,890 - GFF2530 0.34 -0.3 589,890 - GFF2530 0.34 -0.3 589,890 - GFF2530 0.34 -0.2 589,890 - GFF2530 0.34 +0.4 589,890 - GFF2530 0.34 -1.6 590,041 + GFF2530 0.50 +0.4 590,042 + GFF2530 0.50 -0.4 590,042 + GFF2530 0.50 +0.0 590,042 + GFF2530 0.50 -0.3 590,042 + GFF2530 0.50 -1.1 590,042 + GFF2530 0.50 -0.8 590,042 + GFF2530 0.50 +1.3 590,042 + GFF2530 0.50 -0.1 590,043 - GFF2530 0.50 -0.3 590,043 - GFF2530 0.50 -0.3 590,043 - GFF2530 0.50 +0.7 590,043 - GFF2530 0.50 +0.2 590,043 - GFF2530 0.50 +0.1 590,043 - GFF2530 0.50 +0.6 590,043 - GFF2530 0.50 +0.0 590,043 - GFF2530 0.50 +0.3 590,043 - GFF2530 0.50 -0.5 590,043 - GFF2530 0.50 -1.9 590,043 - GFF2530 0.50 +0.9 590,043 - GFF2530 0.50 -0.2 590,198 + GFF2530 0.67 +1.9 590,198 + GFF2530 0.67 +1.9 590,199 - GFF2530 0.67 -0.9 590,199 - GFF2530 0.67 -1.0 590,199 - GFF2530 0.67 -0.1 590,199 - GFF2530 0.67 -0.4 590,199 - GFF2530 0.67 +0.8 590,288 + GFF2530 0.76 -1.1 590,289 - GFF2530 0.76 -0.2 590,289 - GFF2530 0.76 -0.0 590,289 - GFF2530 0.76 -0.6 590,289 - GFF2530 0.76 +0.6 590,289 - GFF2530 0.76 -0.2 590,289 - GFF2530 0.76 -0.5 590,289 - GFF2530 0.76 -0.2 590,289 - GFF2530 0.76 -0.6 590,289 - GFF2530 0.76 -0.6 590,339 + GFF2530 0.82 -1.7 590,339 + GFF2530 0.82 +0.6 590,339 + GFF2530 0.82 -0.3 590,339 + GFF2530 0.82 -0.5 590,339 + GFF2530 0.82 +0.0 590,339 + GFF2530 0.82 -0.8 590,339 + GFF2530 0.82 -0.5 590,339 + GFF2530 0.82 -0.2 590,340 - GFF2530 0.82 +0.5 590,340 - GFF2530 0.82 -0.7 590,340 - GFF2530 0.82 -0.8 590,340 - GFF2530 0.82 -1.1 590,340 - GFF2530 0.82 -0.2 590,370 - GFF2530 0.85 -0.1 590,549 + +1.5 590,549 + +0.0 590,549 + -0.0 590,549 + -0.2 590,549 + -0.1 590,549 + +0.7 590,549 + +0.9 590,549 + -0.1 590,549 + -1.0 590,549 + +0.1 590,549 + -2.4 590,549 + +0.8 590,550 - -1.8 590,550 - +0.2 590,550 - -0.3 590,550 - +0.1 590,550 - -0.6 590,550 - +0.6 590,550 - +0.5 590,550 - -0.5 590,550 - -0.0 590,659 + -0.3 590,660 - +0.0 590,660 - +0.0 590,660 - +0.7 590,660 - -0.5 590,660 - -0.2 590,660 - -1.0 590,667 - -2.3 590,667 - +0.5 590,679 + -0.0 590,680 - +0.8 590,680 - +0.3 590,918 + GFF2531 0.35 -1.2 590,918 + GFF2531 0.35 -0.2 590,918 + GFF2531 0.35 +0.2 591,056 + GFF2531 0.64 +0.6 591,056 + GFF2531 0.64 -1.5 591,056 + GFF2531 0.64 +0.2 591,056 + GFF2531 0.64 -0.2 591,056 + GFF2531 0.64 -0.0 591,056 + GFF2531 0.64 -0.0 591,057 - GFF2531 0.64 -0.5 591,057 - GFF2531 0.64 -2.6 591,057 - GFF2531 0.64 +0.0 591,057 - GFF2531 0.64 -0.3 591,057 - GFF2531 0.64 +0.1 591,057 - GFF2531 0.64 +2.9 591,080 + GFF2531 0.69 +0.3 591,080 + GFF2531 0.69 -0.0 591,080 + GFF2531 0.69 +0.1 591,080 + GFF2531 0.69 -0.1 591,080 + GFF2531 0.69 +0.2 591,080 + GFF2531 0.69 -0.6 591,080 + GFF2531 0.69 -0.7 591,080 + GFF2531 0.69 +0.4 591,081 - GFF2531 0.69 -0.2 591,081 - GFF2531 0.69 +0.2 591,081 - GFF2531 0.69 -0.9 591,081 - GFF2531 0.69 -0.1 591,081 - GFF2531 0.69 -0.8 591,433 + +2.5 591,433 + +0.2 591,433 + -0.1 591,434 - -0.7
Or see this region's nucleotide sequence