Strain Fitness in Variovorax sp. SCN45 around GFF170

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
199,710	+		GFF168	0.60	-0.1
199,710	+		GFF168	0.60	-0.4
199,710	+		GFF168	0.60	-3.1
199,722	+		GFF168	0.61	-0.6
199,723	-		GFF168	0.61	-3.7
199,758	+		GFF168	0.65	-2.4
199,761	+		GFF168	0.65	-0.9
199,761	+		GFF168	0.65	-2.2
199,761	+		GFF168	0.65	+0.2
199,761	+		GFF168	0.65	-0.0
199,761	+		GFF168	0.65	-1.6
199,761	+		GFF168	0.65	-3.2
199,761	+		GFF168	0.65	-0.2
199,761	+		GFF168	0.65	-0.2
199,762	-		GFF168	0.66	-1.9
199,762	-		GFF168	0.66	-1.4
199,773	+		GFF168	0.67	-3.5
199,774	-		GFF168	0.67	-1.6
199,893	+		GFF168	0.81	-0.0
199,894	-		GFF168	0.81	-1.6
200,043	+				-0.8
200,044	-				-1.6
200,175	+		GFF169	0.20	-0.5
200,175	+		GFF169	0.20	-2.2
200,175	+		GFF169	0.20	+0.2
200,175	+		GFF169	0.20	-0.8
200,175	+		GFF169	0.20	+0.5
200,175	+		GFF169	0.20	-0.7
200,176	-		GFF169	0.20	-0.6
200,176	-		GFF169	0.20	-1.6
200,176	-		GFF169	0.20	-0.7
200,303	+		GFF169	0.41	-1.0
200,303	+		GFF169	0.41	-0.4
200,303	+		GFF169	0.41	-0.5
200,303	+		GFF169	0.41	+0.4
200,304	-		GFF169	0.41	-1.0
200,304	-		GFF169	0.41	-0.2
200,304	-		GFF169	0.41	-1.1
200,321	+		GFF169	0.44	-0.7
200,322	-		GFF169	0.44	-0.6
200,322	-		GFF169	0.44	-0.8
200,322	-		GFF169	0.44	-2.7
200,334	+		GFF169	0.46	+0.1
200,471	+		GFF169	0.69	-1.8
200,471	+		GFF169	0.69	-0.6
200,471	+		GFF169	0.69	-2.5
200,471	+		GFF169	0.69	-1.4
200,471	+		GFF169	0.69	-1.1
200,471	+		GFF169	0.69	+0.3
200,471	+		GFF169	0.69	+0.1
200,471	+		GFF169	0.69	-1.3
200,472	-		GFF169	0.69	+0.8
200,472	-		GFF169	0.69	-1.4
200,472	-		GFF169	0.69	+0.4
200,526	+		GFF169	0.78	+0.4
200,526	+		GFF169	0.78	-0.9
200,526	+		GFF169	0.78	-1.1
200,527	-		GFF169	0.78	-0.8
200,594	+		GFF169	0.89	-0.5
200,594	+		GFF169	0.89	+0.1
200,594	+		GFF169	0.89	-1.8
200,594	+		GFF169	0.89	-0.9
200,595	-		GFF169	0.89	+0.7
200,595	-		GFF169	0.89	-1.6
200,595	-		GFF169	0.89	-0.7
200,595	-		GFF169	0.89	-1.1
200,931	+		GFF170	0.23	+0.2
200,931	+		GFF170	0.23	-1.2
200,932	-		GFF170	0.23	+0.0
200,932	-		GFF170	0.23	-0.2
200,932	-		GFF170	0.23	+2.4
200,946	+		GFF170	0.24	+0.1
200,947	-		GFF170	0.24	-0.9
201,149	+		GFF170	0.41	-1.4
201,149	+		GFF170	0.41	-1.4
201,149	+		GFF170	0.41	+1.9
201,149	+		GFF170	0.41	+3.0
201,150	-		GFF170	0.41	-0.7
201,210	+		GFF170	0.46	+0.8
201,211	-		GFF170	0.46	+0.1
201,211	-		GFF170	0.46	+0.1
201,735	+		GFF170	0.89	-0.2
201,735	+		GFF170	0.89	-0.5
201,735	+		GFF170	0.89	-0.0
201,735	+		GFF170	0.89	-0.8
201,735	+		GFF170	0.89	-0.3
201,735	+		GFF170	0.89	-0.1
201,735	+		GFF170	0.89	+0.6
201,735	+		GFF170	0.89	-1.6
201,735	+		GFF170	0.89	-0.2
201,735	+		GFF170	0.89	+0.4
201,735	+		GFF170	0.89	-1.1
201,735	+		GFF170	0.89	-2.2
201,735	+		GFF170	0.89	+1.0
201,735	+		GFF170	0.89	-1.2
201,736	-		GFF170	0.89	+0.1
201,736	-		GFF170	0.89	+0.1
201,736	-		GFF170	0.89	-0.5
201,736	-		GFF170	0.89	+1.3
201,736	-		GFF170	0.89	+0.8
201,736	-		GFF170	0.89	+0.5
201,736	-		GFF170	0.89	-0.4
201,736	-		GFF170	0.89	+0.1
201,736	-		GFF170	0.89	-0.4
201,736	-		GFF170	0.89	-0.5
201,773	+				-0.5
201,773	+				-0.2
201,870	+				+1.4
201,870	+				-0.6
201,870	+				+0.1
201,870	+				+0.9
201,870	+				-1.0
201,870	+				+0.1
201,870	+				-0.4
201,870	+				-0.4
201,870	+				+0.1
201,870	+				-0.1
201,870	+				-0.2
201,870	+				+0.0
201,870	+				-1.2
201,870	+				-0.1
201,871	-				-1.5
201,871	-				+0.2
201,871	-				-1.2
201,871	-				-0.8
201,871	-				-0.3
201,871	-				-0.3
201,871	-				-0.4
201,871	-				-0.4
201,871	-				+0.7
201,871	-				+0.7
201,882	+				-0.4
201,882	+				-0.2
201,883	-				-1.3
201,927	-				+0.2
201,927	-				+0.1
202,032	+		GFF171	0.24	-0.8
202,032	+		GFF171	0.24	-0.2
202,033	-		GFF171	0.24	+1.0
202,033	-		GFF171	0.24	+0.1
202,033	-		GFF171	0.24	-1.4
202,033	-		GFF171	0.24	+0.1
202,033	-		GFF171	0.24	-0.4
202,033	-		GFF171	0.24	-0.3
202,036	+		GFF171	0.25	-1.3
202,036	+		GFF171	0.25	+0.4
202,036	+		GFF171	0.25	-0.6
202,036	+		GFF171	0.25	-0.5
202,036	+		GFF171	0.25	+0.1
202,036	+		GFF171	0.25	+0.2
202,036	+		GFF171	0.25	-1.8
202,036	+		GFF171	0.25	+0.4
202,036	+		GFF171	0.25	+0.8
202,036	+		GFF171	0.25	+0.8
202,037	-		GFF171	0.25	-0.7
202,037	-		GFF171	0.25	-0.2
202,037	-		GFF171	0.25	+0.2
202,037	-		GFF171	0.25	+1.0
202,037	-		GFF171	0.25	-0.2
202,384	+				-0.6
202,384	+				-0.6
202,385	-				+0.3
202,420	+				+0.0
202,420	+				-0.1
202,420	+				+0.5
202,420	+				-0.2
202,420	+				-0.5
202,421	-				-0.4
202,421	-				-0.4
202,450	+				-1.2
202,450	+				+1.4
202,450	+				-1.1
202,450	+				+0.7
202,450	+				+0.1
202,450	+				-0.4
202,450	+				-1.1
202,450	+				+0.2
202,450	+				+0.7
202,450	+				-0.6
202,450	+				-0.3
202,450	+				+1.0
202,450	+				+0.2
202,450	+				-0.3
202,450	+				+0.1
202,450	+				-1.2
202,450	+				+0.4
202,451	-				+0.1
202,451	-				+0.1
202,451	-				-1.1
202,451	-				-0.8
202,451	-				+0.6
202,451	-				-0.4
202,451	-				-0.1
202,451	-				-0.6
202,451	-				-0.2
202,451	-				-0.3
202,451	-				+0.4
202,451	-				-1.2
202,451	-				+0.2
202,451	-				+0.4
202,451	-				+1.4
202,501	+				-0.8
202,501	+				-0.7
202,501	+				-0.7
202,501	+				-0.1
202,502	-				-1.0
202,502	-				+0.2
202,502	-				-0.6
202,502	-				+1.2