Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF164 and GFF165 are separated by 171 nucleotides GFF165 and GFF166 are separated by 8 nucleotides
GFF164 - DinG family ATP-dependent helicase CPE1197, at 190,626 to 192,929
GFF164
GFF165 - Chromate transport protein ChrA, at 193,101 to 194,468
GFF165
GFF166 - Permease of the drug/metabolite transporter (DMT) superfamily, at 194,477 to 195,532
GFF166
Position (kb) 193
194
195 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 192.319 kb on + strand, within GFF164 at 192.319 kb on + strand, within GFF164 at 192.319 kb on + strand, within GFF164 at 192.319 kb on + strand, within GFF164 at 192.320 kb on - strand, within GFF164 at 192.320 kb on - strand, within GFF164 at 192.320 kb on - strand, within GFF164 at 192.372 kb on + strand, within GFF164 at 192.372 kb on + strand, within GFF164 at 192.373 kb on - strand, within GFF164 at 192.373 kb on - strand, within GFF164 at 192.440 kb on - strand, within GFF164 at 192.532 kb on + strand, within GFF164 at 192.533 kb on - strand, within GFF164 at 192.533 kb on - strand, within GFF164 at 192.533 kb on - strand, within GFF164 at 192.533 kb on - strand, within GFF164 at 192.533 kb on - strand, within GFF164 at 192.589 kb on + strand, within GFF164 at 192.589 kb on + strand, within GFF164 at 192.589 kb on + strand, within GFF164 at 192.589 kb on + strand, within GFF164 at 192.589 kb on + strand, within GFF164 at 192.589 kb on + strand, within GFF164 at 192.589 kb on + strand, within GFF164 at 192.589 kb on + strand, within GFF164 at 192.589 kb on + strand, within GFF164 at 192.589 kb on + strand, within GFF164 at 192.589 kb on + strand, within GFF164 at 192.589 kb on + strand, within GFF164 at 192.589 kb on + strand, within GFF164 at 192.589 kb on + strand, within GFF164 at 192.589 kb on + strand, within GFF164 at 192.590 kb on - strand, within GFF164 at 192.590 kb on - strand, within GFF164 at 192.590 kb on - strand, within GFF164 at 192.590 kb on - strand, within GFF164 at 192.590 kb on - strand, within GFF164 at 192.590 kb on - strand, within GFF164 at 192.590 kb on - strand, within GFF164 at 192.590 kb on - strand, within GFF164 at 192.590 kb on - strand, within GFF164 at 192.590 kb on - strand, within GFF164 at 192.590 kb on - strand, within GFF164 at 192.590 kb on - strand, within GFF164 at 192.590 kb on - strand, within GFF164 at 192.590 kb on - strand, within GFF164 at 192.590 kb on - strand, within GFF164 at 192.590 kb on - strand, within GFF164 at 192.695 kb on - strand, within GFF164 at 192.760 kb on + strand at 192.760 kb on + strand at 192.949 kb on + strand at 192.949 kb on + strand at 192.950 kb on - strand at 192.950 kb on - strand at 192.951 kb on + strand at 192.951 kb on + strand at 192.951 kb on + strand at 192.951 kb on + strand at 192.951 kb on + strand at 192.951 kb on + strand at 192.951 kb on + strand at 192.951 kb on + strand at 192.951 kb on + strand at 192.952 kb on - strand at 192.952 kb on - strand at 192.952 kb on - strand at 192.952 kb on - strand at 192.952 kb on - strand at 192.952 kb on - strand at 192.952 kb on - strand at 192.952 kb on - strand at 192.952 kb on - strand at 192.952 kb on - strand at 192.983 kb on + strand at 192.983 kb on + strand at 192.983 kb on + strand at 192.983 kb on + strand at 192.984 kb on - strand at 192.984 kb on - strand at 192.984 kb on - strand at 192.984 kb on - strand at 192.984 kb on - strand at 192.984 kb on - strand at 193.012 kb on + strand at 193.012 kb on + strand at 193.012 kb on + strand at 193.012 kb on + strand at 193.012 kb on + strand at 193.012 kb on + strand at 193.013 kb on - strand at 193.013 kb on - strand at 193.013 kb on - strand at 193.013 kb on - strand at 193.013 kb on - strand at 193.013 kb on - strand at 193.013 kb on - strand at 193.013 kb on - strand at 193.013 kb on - strand at 193.013 kb on - strand at 193.241 kb on + strand, within GFF165 at 193.241 kb on + strand, within GFF165 at 193.241 kb on + strand, within GFF165 at 193.242 kb on - strand, within GFF165 at 193.347 kb on + strand, within GFF165 at 193.347 kb on + strand, within GFF165 at 193.347 kb on + strand, within GFF165 at 193.347 kb on + strand, within GFF165 at 193.347 kb on + strand, within GFF165 at 193.347 kb on + strand, within GFF165 at 193.347 kb on + strand, within GFF165 at 193.347 kb on + strand, within GFF165 at 193.347 kb on + strand, within GFF165 at 193.347 kb on + strand, within GFF165 at 193.347 kb on + strand, within GFF165 at 193.347 kb on + strand, within GFF165 at 193.347 kb on + strand, within GFF165 at 193.347 kb on + strand, within GFF165 at 193.347 kb on + strand, within GFF165 at 193.348 kb on - strand, within GFF165 at 193.348 kb on - strand, within GFF165 at 193.348 kb on - strand, within GFF165 at 193.348 kb on - strand, within GFF165 at 193.348 kb on - strand, within GFF165 at 193.348 kb on - strand, within GFF165 at 193.348 kb on - strand, within GFF165 at 193.348 kb on - strand, within GFF165 at 193.348 kb on - strand, within GFF165 at 193.348 kb on - strand, within GFF165 at 193.348 kb on - strand, within GFF165 at 193.348 kb on - strand, within GFF165 at 193.446 kb on + strand, within GFF165 at 193.446 kb on + strand, within GFF165 at 193.446 kb on + strand, within GFF165 at 193.446 kb on + strand, within GFF165 at 193.446 kb on + strand, within GFF165 at 193.446 kb on + strand, within GFF165 at 193.446 kb on + strand, within GFF165 at 193.446 kb on + strand, within GFF165 at 193.446 kb on + strand, within GFF165 at 193.446 kb on + strand, within GFF165 at 193.447 kb on - strand, within GFF165 at 193.447 kb on - strand, within GFF165 at 193.447 kb on - strand, within GFF165 at 193.447 kb on - strand, within GFF165 at 193.447 kb on - strand, within GFF165 at 193.447 kb on - strand, within GFF165 at 193.447 kb on - strand, within GFF165 at 193.447 kb on - strand, within GFF165 at 193.447 kb on - strand, within GFF165 at 193.447 kb on - strand, within GFF165 at 193.447 kb on - strand, within GFF165 at 193.488 kb on + strand, within GFF165 at 193.488 kb on + strand, within GFF165 at 193.489 kb on - strand, within GFF165 at 193.489 kb on - strand, within GFF165 at 193.603 kb on + strand, within GFF165 at 193.728 kb on + strand, within GFF165 at 193.728 kb on + strand, within GFF165 at 193.728 kb on + strand, within GFF165 at 193.729 kb on - strand, within GFF165 at 193.729 kb on - strand, within GFF165 at 193.729 kb on - strand, within GFF165 at 193.935 kb on + strand, within GFF165 at 193.935 kb on + strand, within GFF165 at 193.935 kb on + strand, within GFF165 at 193.935 kb on + strand, within GFF165 at 193.935 kb on + strand, within GFF165 at 193.936 kb on - strand, within GFF165 at 193.936 kb on - strand, within GFF165 at 193.936 kb on - strand, within GFF165 at 193.936 kb on - strand, within GFF165 at 193.936 kb on - strand, within GFF165 at 193.936 kb on - strand, within GFF165 at 193.950 kb on + strand, within GFF165 at 193.950 kb on + strand, within GFF165 at 193.950 kb on + strand, within GFF165 at 193.950 kb on + strand, within GFF165 at 193.951 kb on - strand, within GFF165 at 193.951 kb on - strand, within GFF165 at 193.951 kb on - strand, within GFF165 at 193.956 kb on + strand, within GFF165 at 193.956 kb on + strand, within GFF165 at 193.956 kb on + strand, within GFF165 at 193.957 kb on - strand, within GFF165 at 194.301 kb on + strand, within GFF165 at 194.466 kb on + strand at 194.467 kb on - strand at 194.474 kb on + strand at 194.474 kb on + strand at 194.474 kb on + strand at 194.474 kb on + strand at 194.474 kb on + strand at 194.474 kb on + strand at 194.474 kb on + strand at 194.474 kb on + strand at 194.474 kb on + strand at 194.475 kb on - strand at 194.475 kb on - strand at 194.475 kb on - strand at 194.475 kb on - strand at 194.475 kb on - strand at 194.475 kb on - strand at 194.475 kb on - strand at 194.478 kb on + strand at 194.478 kb on + strand at 194.478 kb on + strand at 194.479 kb on - strand at 194.479 kb on - strand at 194.479 kb on - strand at 194.479 kb on - strand at 194.479 kb on - strand at 194.479 kb on - strand at 194.479 kb on - strand at 194.717 kb on + strand, within GFF166 at 194.717 kb on + strand, within GFF166 at 194.726 kb on - strand, within GFF166 at 194.726 kb on - strand, within GFF166 at 194.726 kb on - strand, within GFF166 at 194.832 kb on + strand, within GFF166 at 194.832 kb on + strand, within GFF166 at 194.832 kb on + strand, within GFF166 at 194.832 kb on + strand, within GFF166 at 194.833 kb on - strand, within GFF166 at 194.833 kb on - strand, within GFF166 at 194.833 kb on - strand, within GFF166 at 194.833 kb on - strand, within GFF166 at 195.168 kb on + strand, within GFF166 at 195.169 kb on - strand, within GFF166 at 195.169 kb on - strand, within GFF166
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL remove 192,319 + GFF164 0.73 -1.2 192,319 + GFF164 0.73 -0.6 192,319 + GFF164 0.73 +0.1 192,319 + GFF164 0.73 +0.4 192,320 - GFF164 0.74 -0.2 192,320 - GFF164 0.74 -0.5 192,320 - GFF164 0.74 +0.8 192,372 + GFF164 0.76 +0.1 192,372 + GFF164 0.76 -1.1 192,373 - GFF164 0.76 -0.7 192,373 - GFF164 0.76 +0.2 192,440 - GFF164 0.79 -0.0 192,532 + GFF164 0.83 -2.1 192,533 - GFF164 0.83 -0.9 192,533 - GFF164 0.83 -0.2 192,533 - GFF164 0.83 -0.6 192,533 - GFF164 0.83 -0.2 192,533 - GFF164 0.83 +0.6 192,589 + GFF164 0.85 -1.5 192,589 + GFF164 0.85 +0.9 192,589 + GFF164 0.85 -0.5 192,589 + GFF164 0.85 -0.8 192,589 + GFF164 0.85 -0.1 192,589 + GFF164 0.85 +0.2 192,589 + GFF164 0.85 +0.9 192,589 + GFF164 0.85 -0.5 192,589 + GFF164 0.85 -0.2 192,589 + GFF164 0.85 -0.7 192,589 + GFF164 0.85 +0.4 192,589 + GFF164 0.85 -0.2 192,589 + GFF164 0.85 -0.4 192,589 + GFF164 0.85 -0.9 192,589 + GFF164 0.85 +0.2 192,590 - GFF164 0.85 +0.7 192,590 - GFF164 0.85 +0.1 192,590 - GFF164 0.85 -0.1 192,590 - GFF164 0.85 -0.2 192,590 - GFF164 0.85 -0.5 192,590 - GFF164 0.85 -1.2 192,590 - GFF164 0.85 -0.1 192,590 - GFF164 0.85 -0.6 192,590 - GFF164 0.85 +0.2 192,590 - GFF164 0.85 +0.5 192,590 - GFF164 0.85 -0.6 192,590 - GFF164 0.85 -0.9 192,590 - GFF164 0.85 -0.2 192,590 - GFF164 0.85 +2.4 192,590 - GFF164 0.85 -2.1 192,590 - GFF164 0.85 -0.9 192,695 - GFF164 0.90 +0.8 192,760 + +0.1 192,760 + -1.2 192,949 + -0.6 192,949 + +0.2 192,950 - -0.4 192,950 - -0.6 192,951 + -0.2 192,951 + -0.7 192,951 + -0.5 192,951 + +1.4 192,951 + -0.2 192,951 + +1.6 192,951 + -1.9 192,951 + -0.2 192,951 + -0.4 192,952 - +0.3 192,952 - -0.0 192,952 - +0.0 192,952 - +0.2 192,952 - -0.8 192,952 - -0.8 192,952 - +1.6 192,952 - -0.2 192,952 - -1.6 192,952 - -0.5 192,983 + -0.8 192,983 + -0.6 192,983 + -1.4 192,983 + +0.8 192,984 - -0.2 192,984 - +0.2 192,984 - -0.2 192,984 - -0.6 192,984 - -0.1 192,984 - +0.0 193,012 + +2.8 193,012 + -0.8 193,012 + +1.1 193,012 + -0.7 193,012 + +0.1 193,012 + -0.4 193,013 - -0.3 193,013 - +1.1 193,013 - +0.1 193,013 - -3.4 193,013 - -0.0 193,013 - +0.5 193,013 - +0.5 193,013 - -0.5 193,013 - -0.7 193,013 - -0.3 193,241 + GFF165 0.10 -0.4 193,241 + GFF165 0.10 -0.7 193,241 + GFF165 0.10 -0.2 193,242 - GFF165 0.10 +0.6 193,347 + GFF165 0.18 -0.2 193,347 + GFF165 0.18 -0.5 193,347 + GFF165 0.18 +0.0 193,347 + GFF165 0.18 -0.4 193,347 + GFF165 0.18 -1.2 193,347 + GFF165 0.18 +0.5 193,347 + GFF165 0.18 -0.1 193,347 + GFF165 0.18 +0.8 193,347 + GFF165 0.18 -0.7 193,347 + GFF165 0.18 -0.1 193,347 + GFF165 0.18 +1.4 193,347 + GFF165 0.18 -0.1 193,347 + GFF165 0.18 +0.6 193,347 + GFF165 0.18 -0.7 193,347 + GFF165 0.18 -0.1 193,348 - GFF165 0.18 +0.4 193,348 - GFF165 0.18 +1.4 193,348 - GFF165 0.18 -0.9 193,348 - GFF165 0.18 -2.5 193,348 - GFF165 0.18 -2.2 193,348 - GFF165 0.18 -0.0 193,348 - GFF165 0.18 -0.4 193,348 - GFF165 0.18 +0.7 193,348 - GFF165 0.18 -0.2 193,348 - GFF165 0.18 -0.5 193,348 - GFF165 0.18 -0.6 193,348 - GFF165 0.18 +0.4 193,446 + GFF165 0.25 +0.6 193,446 + GFF165 0.25 +0.4 193,446 + GFF165 0.25 -0.2 193,446 + GFF165 0.25 +2.0 193,446 + GFF165 0.25 -0.3 193,446 + GFF165 0.25 -0.1 193,446 + GFF165 0.25 -0.8 193,446 + GFF165 0.25 -0.4 193,446 + GFF165 0.25 +0.8 193,446 + GFF165 0.25 -0.6 193,447 - GFF165 0.25 -1.1 193,447 - GFF165 0.25 -0.1 193,447 - GFF165 0.25 +1.1 193,447 - GFF165 0.25 +0.4 193,447 - GFF165 0.25 -1.3 193,447 - GFF165 0.25 +0.3 193,447 - GFF165 0.25 +2.0 193,447 - GFF165 0.25 -1.1 193,447 - GFF165 0.25 -0.8 193,447 - GFF165 0.25 +0.0 193,447 - GFF165 0.25 +0.2 193,488 + GFF165 0.28 -1.0 193,488 + GFF165 0.28 -0.1 193,489 - GFF165 0.28 +0.2 193,489 - GFF165 0.28 +0.6 193,603 + GFF165 0.37 -0.9 193,728 + GFF165 0.46 -0.1 193,728 + GFF165 0.46 -1.1 193,728 + GFF165 0.46 -0.5 193,729 - GFF165 0.46 +2.4 193,729 - GFF165 0.46 -1.8 193,729 - GFF165 0.46 -0.2 193,935 + GFF165 0.61 -0.9 193,935 + GFF165 0.61 -0.5 193,935 + GFF165 0.61 +0.4 193,935 + GFF165 0.61 +0.1 193,935 + GFF165 0.61 -0.4 193,936 - GFF165 0.61 -2.0 193,936 - GFF165 0.61 +1.0 193,936 - GFF165 0.61 -0.5 193,936 - GFF165 0.61 -0.2 193,936 - GFF165 0.61 -0.2 193,936 - GFF165 0.61 -0.7 193,950 + GFF165 0.62 -2.1 193,950 + GFF165 0.62 +2.0 193,950 + GFF165 0.62 -0.3 193,950 + GFF165 0.62 -1.2 193,951 - GFF165 0.62 +0.4 193,951 - GFF165 0.62 -0.3 193,951 - GFF165 0.62 +0.8 193,956 + GFF165 0.62 +0.2 193,956 + GFF165 0.62 -1.1 193,956 + GFF165 0.62 +0.2 193,957 - GFF165 0.63 -0.9 194,301 + GFF165 0.88 +1.4 194,466 + -1.0 194,467 - -1.6 194,474 + -0.6 194,474 + +0.1 194,474 + +0.6 194,474 + -0.6 194,474 + -0.2 194,474 + -0.1 194,474 + +0.7 194,474 + +0.2 194,474 + -0.5 194,475 - -1.3 194,475 - -1.3 194,475 - -1.3 194,475 - +2.4 194,475 - +0.4 194,475 - -0.2 194,475 - -0.3 194,478 + -0.0 194,478 + +1.2 194,478 + -0.2 194,479 - -1.4 194,479 - -0.8 194,479 - -0.0 194,479 - -0.9 194,479 - +0.3 194,479 - -0.3 194,479 - -0.7 194,717 + GFF166 0.23 +0.6 194,717 + GFF166 0.23 -0.2 194,726 - GFF166 0.24 -0.1 194,726 - GFF166 0.24 -0.8 194,726 - GFF166 0.24 -0.3 194,832 + GFF166 0.34 +0.3 194,832 + GFF166 0.34 -0.6 194,832 + GFF166 0.34 -0.3 194,832 + GFF166 0.34 -0.1 194,833 - GFF166 0.34 +0.3 194,833 - GFF166 0.34 -0.6 194,833 - GFF166 0.34 +1.1 194,833 - GFF166 0.34 -0.6 195,168 + GFF166 0.65 -0.6 195,169 - GFF166 0.66 -0.8 195,169 - GFF166 0.66 -0.4
Or see this region's nucleotide sequence