Strain Fitness in Variovorax sp. SCN45 around GFF1575

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
174,860	+		GFF1574	0.32	+0.5
174,861	-		GFF1574	0.32	-0.3
174,890	+		GFF1574	0.34	-0.5
174,902	+		GFF1574	0.35	-0.7
174,978	-		GFF1574	0.41	-0.2
174,978	-		GFF1574	0.41	-0.1
174,978	-		GFF1574	0.41	-0.4
175,208	+		GFF1574	0.60	-0.2
175,208	+		GFF1574	0.60	-0.3
175,208	+		GFF1574	0.60	+0.1
175,208	+		GFF1574	0.60	-0.2
175,208	+		GFF1574	0.60	-0.7
175,209	-		GFF1574	0.60	+1.1
175,209	-		GFF1574	0.60	-0.3
175,209	-		GFF1574	0.60	+0.0
175,209	-		GFF1574	0.60	+0.0
175,283	+		GFF1574	0.67	-0.7
176,149	+		GFF1575	0.48	-0.8
176,149	+		GFF1575	0.48	+0.3
176,149	+		GFF1575	0.48	-0.0
176,149	+		GFF1575	0.48	-0.2
176,150	-		GFF1575	0.48	+0.7
176,150	-		GFF1575	0.48	+0.3
176,606	-				+0.9
176,606	-				-0.6
176,826	-		GFF1576	0.16	-0.9
176,843	+		GFF1576	0.18	-0.4
176,843	+		GFF1576	0.18	-0.9
176,844	-		GFF1576	0.18	-0.2
176,987	+		GFF1576	0.34	+1.1
176,987	+		GFF1576	0.34	-1.2
176,988	-		GFF1576	0.34	-1.3
177,228	-		GFF1576	0.60	-0.3
177,228	-		GFF1576	0.60	-0.7
177,349	+		GFF1576	0.73	-2.0
177,350	-		GFF1576	0.74	+0.1
177,579	-				-0.5