Strain Fitness in Variovorax sp. SCN45 around GFF1528

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
124,705	+		GFF1527	0.64	+0.1
124,705	+		GFF1527	0.64	-0.8
124,705	+		GFF1527	0.64	+1.3
124,706	-		GFF1527	0.64	-0.2
124,706	-		GFF1527	0.64	-0.4
124,706	-		GFF1527	0.64	-2.3
124,706	-		GFF1527	0.64	-0.1
124,855	+		GFF1527	0.70	-1.8
124,855	+		GFF1527	0.70	-0.7
124,856	-		GFF1527	0.70	-0.1
124,984	+		GFF1527	0.75	+1.3
125,026	+		GFF1527	0.77	-0.8
125,027	-		GFF1527	0.77	-1.1
125,027	-		GFF1527	0.77	-0.7
125,167	+		GFF1527	0.82	+0.6
125,167	+		GFF1527	0.82	-0.4
125,167	+		GFF1527	0.82	+0.3
125,167	+		GFF1527	0.82	+1.1
125,173	+		GFF1527	0.83	+0.3
125,173	+		GFF1527	0.83	-0.2
125,173	+		GFF1527	0.83	+0.1
125,173	+		GFF1527	0.83	+0.3
125,173	+		GFF1527	0.83	-0.8
125,173	+		GFF1527	0.83	-1.2
125,173	+		GFF1527	0.83	-0.1
125,173	+		GFF1527	0.83	-0.4
125,173	+		GFF1527	0.83	+1.9
125,173	+		GFF1527	0.83	+0.9
125,173	+		GFF1527	0.83	-0.8
125,173	+		GFF1527	0.83	+0.2
125,173	+		GFF1527	0.83	-0.5
125,173	+		GFF1527	0.83	-0.1
125,173	+		GFF1527	0.83	-0.3
125,173	+		GFF1527	0.83	-1.3
125,173	+		GFF1527	0.83	-0.1
125,174	-		GFF1527	0.83	+0.3
125,174	-		GFF1527	0.83	+1.1
125,174	-		GFF1527	0.83	+0.1
125,174	-		GFF1527	0.83	-0.5
125,174	-		GFF1527	0.83	-0.7
125,174	-		GFF1527	0.83	+0.0
125,174	-		GFF1527	0.83	+0.9
125,174	-		GFF1527	0.83	-1.0
125,281	+		GFF1527	0.87	-0.7
125,281	+		GFF1527	0.87	-2.4
125,281	+		GFF1527	0.87	-1.5
125,281	+		GFF1527	0.87	+0.3
125,282	-		GFF1527	0.87	+0.7
125,282	-		GFF1527	0.87	-0.4
125,339	-		GFF1527	0.89	+0.7
125,339	-		GFF1527	0.89	-0.4
125,339	-		GFF1527	0.89	+1.3
125,359	+				-0.6
125,420	-				+0.3
125,420	-				+0.5
125,420	-				-0.5
125,420	-				-0.1
125,428	+				-0.7
125,428	+				-0.2
125,428	+				+0.8
125,429	-				+1.1
125,446	+				+0.2
125,506	+				-0.7
125,506	+				+2.3
125,506	+				+2.3
125,507	-				-0.5
125,507	-				-0.7
125,549	-				-1.2
125,549	-				-0.2
125,549	-				+0.1
125,551	+				-0.3
125,551	+				-0.8
125,551	+				-0.4
125,551	+				-0.4
125,552	-				+0.2
125,587	+				-0.6
125,587	+				-0.4
125,587	+				+0.0
125,587	+				-1.4
125,951	-		GFF1528	0.28	+0.8
125,951	-		GFF1528	0.28	+0.6
125,951	-		GFF1528	0.28	-0.3
126,025	+		GFF1528	0.33	+1.6
126,026	-		GFF1528	0.34	+0.3
126,037	+		GFF1528	0.34	-0.4
126,037	+		GFF1528	0.34	-0.4
126,038	-		GFF1528	0.35	+0.5
126,050	+		GFF1528	0.35	+0.3
126,050	+		GFF1528	0.35	+0.2
126,050	+		GFF1528	0.35	-0.3
126,050	+		GFF1528	0.35	+0.3
126,050	+		GFF1528	0.35	+0.4
126,050	+		GFF1528	0.35	-0.1
126,051	-		GFF1528	0.36	-0.4
126,051	-		GFF1528	0.36	-0.4
126,051	-		GFF1528	0.36	-0.3
126,136	+		GFF1528	0.42	-0.3
126,136	+		GFF1528	0.42	-0.6
126,136	+		GFF1528	0.42	-0.3
126,136	+		GFF1528	0.42	+2.1
126,136	+		GFF1528	0.42	+1.1
126,136	+		GFF1528	0.42	+0.2
126,137	-		GFF1528	0.42	+0.2
126,137	-		GFF1528	0.42	+0.1
126,137	-		GFF1528	0.42	-0.5
126,137	-		GFF1528	0.42	-1.5
126,137	-		GFF1528	0.42	+0.8
126,137	-		GFF1528	0.42	-0.2
126,138	+		GFF1528	0.43	-0.1
126,138	+		GFF1528	0.43	+0.0
126,138	+		GFF1528	0.43	-0.3
126,138	+		GFF1528	0.43	-0.4
126,139	-		GFF1528	0.43	-0.8
126,258	-		GFF1528	0.52	+0.6
126,384	-		GFF1528	0.62	+1.1
126,493	+		GFF1528	0.71	-0.9
126,494	-		GFF1528	0.71	+1.1
126,506	-		GFF1528	0.72	-0.1
126,506	-		GFF1528	0.72	-0.1
126,506	-		GFF1528	0.72	+0.7
126,514	+		GFF1528	0.72	-0.2
126,515	-		GFF1528	0.73	-0.5
126,580	+		GFF1528	0.78	+0.6
126,580	+		GFF1528	0.78	+1.0
126,581	-		GFF1528	0.78	-0.2
126,581	-		GFF1528	0.78	+0.3
126,764	+				-0.9
126,854	-				-0.0
127,283	-		GFF1529	0.76	-1.3
127,456	+				+0.0
127,457	-				+0.1
127,463	-				-0.5
127,463	-				-0.3
127,578	+				+0.6
127,579	-				-1.4