Experiment: JK36
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ybeY and corC are separated by 89 nucleotides corC and lnt are separated by 24 nucleotides lnt and BNILDI_21635 are separated by 77 nucleotides
BNILDI_21620: ybeY - rRNA maturation RNase YbeY, at 4,346,748 to 4,347,215
ybeY
BNILDI_21625: corC - CNNM family magnesium/cobalt transport protein CorC, at 4,347,305 to 4,348,183
corC
BNILDI_21630: lnt - apolipoprotein N-acyltransferase, at 4,348,208 to 4,349,746
lnt
BNILDI_21635: BNILDI_21635 - Peptidase S54, at 4,349,824 to 4,350,804
_21635
Position (kb) 4348
4349
4350 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4347.213 kb on + strand at 4347.213 kb on + strand at 4347.277 kb on + strand at 4347.281 kb on + strand at 4347.281 kb on + strand at 4347.281 kb on + strand at 4347.281 kb on + strand at 4347.282 kb on - strand at 4347.340 kb on - strand at 4347.463 kb on + strand, within corC at 4347.472 kb on + strand, within corC at 4347.721 kb on - strand, within corC at 4347.749 kb on - strand, within corC at 4347.749 kb on - strand, within corC at 4347.934 kb on + strand, within corC at 4348.205 kb on + strand at 4349.737 kb on + strand at 4349.738 kb on - strand at 4349.758 kb on + strand at 4349.778 kb on + strand at 4349.839 kb on - strand at 4349.871 kb on + strand at 4349.871 kb on + strand at 4349.872 kb on - strand at 4350.035 kb on + strand, within BNILDI_21635 at 4350.035 kb on + strand, within BNILDI_21635 at 4350.035 kb on + strand, within BNILDI_21635 at 4350.036 kb on - strand, within BNILDI_21635 at 4350.050 kb on + strand, within BNILDI_21635 at 4350.064 kb on + strand, within BNILDI_21635 at 4350.064 kb on + strand, within BNILDI_21635 at 4350.065 kb on - strand, within BNILDI_21635 at 4350.087 kb on + strand, within BNILDI_21635 at 4350.101 kb on + strand, within BNILDI_21635 at 4350.129 kb on + strand, within BNILDI_21635 at 4350.129 kb on + strand, within BNILDI_21635 at 4350.129 kb on + strand, within BNILDI_21635 at 4350.130 kb on - strand, within BNILDI_21635 at 4350.130 kb on - strand, within BNILDI_21635 at 4350.157 kb on + strand, within BNILDI_21635 at 4350.157 kb on + strand, within BNILDI_21635 at 4350.157 kb on + strand, within BNILDI_21635 at 4350.157 kb on + strand, within BNILDI_21635 at 4350.158 kb on - strand, within BNILDI_21635 at 4350.160 kb on - strand, within BNILDI_21635 at 4350.160 kb on - strand, within BNILDI_21635 at 4350.298 kb on - strand, within BNILDI_21635 at 4350.392 kb on + strand, within BNILDI_21635 at 4350.393 kb on - strand, within BNILDI_21635 at 4350.393 kb on - strand, within BNILDI_21635 at 4350.425 kb on + strand, within BNILDI_21635 at 4350.426 kb on - strand, within BNILDI_21635 at 4350.426 kb on - strand, within BNILDI_21635 at 4350.453 kb on + strand, within BNILDI_21635 at 4350.453 kb on + strand, within BNILDI_21635 at 4350.454 kb on - strand, within BNILDI_21635 at 4350.454 kb on - strand, within BNILDI_21635 at 4350.457 kb on - strand, within BNILDI_21635 at 4350.626 kb on - strand, within BNILDI_21635 at 4350.654 kb on + strand, within BNILDI_21635 at 4350.708 kb on + strand at 4350.709 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction JK36 remove 4,347,213 + -0.3 4,347,213 + +0.8 4,347,277 + -0.0 4,347,281 + +0.3 4,347,281 + -0.6 4,347,281 + -0.8 4,347,281 + -0.3 4,347,282 - -1.4 4,347,340 - -1.3 4,347,463 + corC BNILDI_21625 0.18 +0.2 4,347,472 + corC BNILDI_21625 0.19 +0.4 4,347,721 - corC BNILDI_21625 0.47 -2.8 4,347,749 - corC BNILDI_21625 0.51 -1.6 4,347,749 - corC BNILDI_21625 0.51 +0.1 4,347,934 + corC BNILDI_21625 0.72 +0.6 4,348,205 + -0.2 4,349,737 + -0.8 4,349,738 - -0.7 4,349,758 + +0.0 4,349,778 + -0.9 4,349,839 - -0.5 4,349,871 + +0.2 4,349,871 + -0.0 4,349,872 - +0.4 4,350,035 + BNILDI_21635 0.22 -0.0 4,350,035 + BNILDI_21635 0.22 -0.5 4,350,035 + BNILDI_21635 0.22 -0.0 4,350,036 - BNILDI_21635 0.22 -0.4 4,350,050 + BNILDI_21635 0.23 -0.5 4,350,064 + BNILDI_21635 0.24 -2.0 4,350,064 + BNILDI_21635 0.24 +0.4 4,350,065 - BNILDI_21635 0.25 -1.0 4,350,087 + BNILDI_21635 0.27 +0.1 4,350,101 + BNILDI_21635 0.28 +0.4 4,350,129 + BNILDI_21635 0.31 -0.4 4,350,129 + BNILDI_21635 0.31 +0.7 4,350,129 + BNILDI_21635 0.31 +0.5 4,350,130 - BNILDI_21635 0.31 +0.0 4,350,130 - BNILDI_21635 0.31 +0.6 4,350,157 + BNILDI_21635 0.34 -0.2 4,350,157 + BNILDI_21635 0.34 -1.1 4,350,157 + BNILDI_21635 0.34 +0.3 4,350,157 + BNILDI_21635 0.34 +0.1 4,350,158 - BNILDI_21635 0.34 +2.4 4,350,160 - BNILDI_21635 0.34 +0.1 4,350,160 - BNILDI_21635 0.34 +0.2 4,350,298 - BNILDI_21635 0.48 +0.2 4,350,392 + BNILDI_21635 0.58 +0.2 4,350,393 - BNILDI_21635 0.58 +0.0 4,350,393 - BNILDI_21635 0.58 +1.3 4,350,425 + BNILDI_21635 0.61 +0.1 4,350,426 - BNILDI_21635 0.61 -0.2 4,350,426 - BNILDI_21635 0.61 -1.2 4,350,453 + BNILDI_21635 0.64 -0.9 4,350,453 + BNILDI_21635 0.64 -0.2 4,350,454 - BNILDI_21635 0.64 +0.6 4,350,454 - BNILDI_21635 0.64 +0.8 4,350,457 - BNILDI_21635 0.65 -1.0 4,350,626 - BNILDI_21635 0.82 -1.0 4,350,654 + BNILDI_21635 0.85 -0.6 4,350,708 + -0.3 4,350,709 - -1.6
Or see this region's nucleotide sequence