Strain Fitness in Escherichia coli ECRC62 around BNILDI_17795

Experiment: JK36

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	JK36
3,579,458	-				+1.2
3,579,608	-	ydcI	BNILDI_17790	0.22	-0.5
3,579,688	+	ydcI	BNILDI_17790	0.30	-0.2
3,579,733	+	ydcI	BNILDI_17790	0.35	+0.0
3,579,751	-	ydcI	BNILDI_17790	0.37	+0.2
3,579,766	-	ydcI	BNILDI_17790	0.39	+1.6
3,579,981	+	ydcI	BNILDI_17790	0.62	+0.8
3,580,017	+	ydcI	BNILDI_17790	0.66	-0.6
3,580,059	+	ydcI	BNILDI_17790	0.71	+1.2
3,580,059	+	ydcI	BNILDI_17790	0.71	+0.2
3,580,059	+	ydcI	BNILDI_17790	0.71	+1.6
3,580,132	+	ydcI	BNILDI_17790	0.78	-0.2
3,580,132	+	ydcI	BNILDI_17790	0.78	-0.5
3,580,133	-	ydcI	BNILDI_17790	0.79	+0.7
3,580,142	+	ydcI	BNILDI_17790	0.80	+0.3
3,580,142	+	ydcI	BNILDI_17790	0.80	+0.5
3,580,148	+	ydcI	BNILDI_17790	0.80	+2.2
3,580,148	+	ydcI	BNILDI_17790	0.80	-0.3
3,580,148	+	ydcI	BNILDI_17790	0.80	-0.6
3,580,444	-				-1.0
3,580,575	+	trg	BNILDI_17795	0.13	+0.2
3,580,584	-	trg	BNILDI_17795	0.13	-0.1
3,580,623	-	trg	BNILDI_17795	0.16	-0.6
3,580,653	-	trg	BNILDI_17795	0.17	-0.2
3,580,776	+	trg	BNILDI_17795	0.25	+0.2
3,580,919	+	trg	BNILDI_17795	0.34	-0.3
3,580,920	-	trg	BNILDI_17795	0.34	+0.3
3,580,942	-	trg	BNILDI_17795	0.35	-0.3
3,580,982	+	trg	BNILDI_17795	0.37	+0.0
3,580,982	+	trg	BNILDI_17795	0.37	+0.3
3,581,218	-	trg	BNILDI_17795	0.52	+0.6
3,581,218	-	trg	BNILDI_17795	0.52	+0.2
3,581,344	-	trg	BNILDI_17795	0.59	-0.5
3,581,344	-	trg	BNILDI_17795	0.59	+1.0
3,581,352	-	trg	BNILDI_17795	0.60	+1.3
3,581,352	-	trg	BNILDI_17795	0.60	+0.1
3,581,352	-	trg	BNILDI_17795	0.60	+1.2
3,581,352	-	trg	BNILDI_17795	0.60	+0.5
3,581,462	+	trg	BNILDI_17795	0.67	+0.1
3,581,462	+	trg	BNILDI_17795	0.67	+1.6
3,581,466	+	trg	BNILDI_17795	0.67	+0.2
3,581,466	+	trg	BNILDI_17795	0.67	+0.0
3,581,498	-	trg	BNILDI_17795	0.69	+3.2
3,581,570	-	trg	BNILDI_17795	0.73	+1.0
3,581,580	-	trg	BNILDI_17795	0.74	+0.3
3,581,597	+	trg	BNILDI_17795	0.75	+1.7
3,581,723	+	trg	BNILDI_17795	0.83	-1.3
3,581,723	+	trg	BNILDI_17795	0.83	+1.6
3,581,754	-	trg	BNILDI_17795	0.84	-0.1
3,581,916	+				-0.5
3,581,917	-				-0.4
3,581,922	+				+1.6
3,581,922	+				+0.6
3,581,923	-				-0.4
3,582,003	-				+0.2
3,582,003	-				+1.3
3,582,010	-				-0.7
3,582,032	+				-0.7
3,582,042	-				-0.7
3,582,069	+				+0.1
3,582,069	+				-1.0
3,582,073	+				+1.4
3,582,073	+				-0.2
3,582,114	-				-0.9
3,582,128	+				-2.0
3,582,250	-				-0.2
3,582,250	-				+0.3
3,582,331	-				+0.6
3,582,356	+				+0.7
3,582,356	+				-0.2
3,582,371	+	mokB	BNILDI_17805	0.13	+0.2
3,582,407	-	mokB	BNILDI_17805	0.35	-0.2
3,582,443	-	mokB	BNILDI_17805	0.56	-0.2
3,582,517	+				+0.2
3,582,592	-	yncP	BNILDI_17810	0.84	+0.2
3,582,622	+				+1.6
3,582,623	-				-0.1
3,582,633	+				-0.1
3,582,634	-				-0.4
3,582,658	-	ydcA	BNILDI_17815	0.17	+0.2
3,582,660	+	ydcA	BNILDI_17815	0.18	-0.1
3,582,660	+	ydcA	BNILDI_17815	0.18	-0.5
3,582,661	-	ydcA	BNILDI_17815	0.19	-0.7
3,582,661	-	ydcA	BNILDI_17815	0.19	+0.6
3,582,661	-	ydcA	BNILDI_17815	0.19	+0.1
3,582,673	-	ydcA	BNILDI_17815	0.26	+0.7
3,582,697	-	ydcA	BNILDI_17815	0.40	-1.3
3,582,697	-	ydcA	BNILDI_17815	0.40	-0.9
3,582,784	-				-1.6
3,582,803	+				-0.1
3,582,804	-				-1.1
3,582,846	-				+0.7
3,582,847	+				-0.3
3,582,848	-				-0.2
3,582,848	-				-1.0
3,582,921	+				-0.7
3,582,921	+				+1.9
3,582,962	-				-0.3
3,582,962	-				+0.9
3,582,963	+				-0.4
3,582,964	-				+0.3
3,582,964	-				-1.0
3,582,981	+				-0.5
3,582,989	+				-0.4