Strain Fitness in Erwinia amylovora T8 around OLJFJH_06120

Experiment: FE-G3T (Control flower group 3, top)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_06115 and OLJFJH_06120 are separated by 169 nucleotidesOLJFJH_06120 and OLJFJH_06125 are separated by 29 nucleotides OLJFJH_06115: OLJFJH_06115 - acetylornithine deacetylase, at 1,235,137 to 1,236,288 _06115 OLJFJH_06120: OLJFJH_06120 - acetylglutamate kinase, at 1,236,458 to 1,237,237 _06120 OLJFJH_06125: OLJFJH_06125 - argininosuccinate synthase, at 1,237,267 to 1,238,481 _06125 Position (kb) 1236 1237 1238Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1235.502 kb on + strand, within OLJFJH_06115at 1235.508 kb on + strand, within OLJFJH_06115at 1235.508 kb on + strand, within OLJFJH_06115at 1235.532 kb on + strand, within OLJFJH_06115at 1235.743 kb on - strand, within OLJFJH_06115at 1235.743 kb on - strand, within OLJFJH_06115at 1235.751 kb on + strand, within OLJFJH_06115at 1235.752 kb on - strand, within OLJFJH_06115at 1235.879 kb on + strand, within OLJFJH_06115at 1235.879 kb on + strand, within OLJFJH_06115at 1235.880 kb on - strand, within OLJFJH_06115at 1235.880 kb on - strand, within OLJFJH_06115at 1235.980 kb on - strand, within OLJFJH_06115at 1235.980 kb on - strand, within OLJFJH_06115at 1235.980 kb on - strand, within OLJFJH_06115at 1236.099 kb on + strand, within OLJFJH_06115at 1236.099 kb on + strand, within OLJFJH_06115at 1236.100 kb on - strand, within OLJFJH_06115at 1236.475 kb on + strandat 1236.475 kb on + strandat 1236.483 kb on + strandat 1236.484 kb on - strandat 1236.545 kb on + strand, within OLJFJH_06120at 1236.550 kb on + strand, within OLJFJH_06120at 1237.033 kb on + strand, within OLJFJH_06120at 1237.034 kb on - strand, within OLJFJH_06120at 1237.235 kb on + strandat 1237.240 kb on - strandat 1237.240 kb on - strandat 1237.240 kb on - strandat 1237.244 kb on + strandat 1237.244 kb on + strandat 1237.245 kb on - strandat 1237.245 kb on - strandat 1237.354 kb on + strandat 1237.355 kb on - strandat 1237.355 kb on - strandat 1237.355 kb on - strandat 1237.528 kb on + strand, within OLJFJH_06125at 1237.540 kb on + strand, within OLJFJH_06125at 1237.540 kb on + strand, within OLJFJH_06125at 1237.540 kb on + strand, within OLJFJH_06125at 1237.541 kb on - strand, within OLJFJH_06125at 1237.589 kb on + strand, within OLJFJH_06125at 1237.590 kb on - strand, within OLJFJH_06125at 1237.590 kb on - strand, within OLJFJH_06125at 1237.675 kb on + strand, within OLJFJH_06125at 1237.675 kb on + strand, within OLJFJH_06125at 1237.675 kb on + strand, within OLJFJH_06125at 1237.676 kb on - strand, within OLJFJH_06125at 1237.676 kb on - strand, within OLJFJH_06125at 1238.082 kb on + strand, within OLJFJH_06125at 1238.083 kb on - strand, within OLJFJH_06125at 1238.122 kb on - strand, within OLJFJH_06125at 1238.175 kb on + strand, within OLJFJH_06125at 1238.175 kb on + strand, within OLJFJH_06125at 1238.176 kb on - strand, within OLJFJH_06125at 1238.209 kb on + strand, within OLJFJH_06125at 1238.209 kb on + strand, within OLJFJH_06125at 1238.209 kb on + strand, within OLJFJH_06125at 1238.209 kb on + strand, within OLJFJH_06125at 1238.209 kb on + strand, within OLJFJH_06125at 1238.209 kb on + strand, within OLJFJH_06125at 1238.210 kb on - strand, within OLJFJH_06125at 1238.218 kb on + strand, within OLJFJH_06125at 1238.219 kb on - strand, within OLJFJH_06125

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Per-strain Table

Position Strand Gene LocusTag Fraction FE-G3T (Control flower group 3, top)
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1,235,502 + OLJFJH_06115 0.32 -2.1
1,235,508 + OLJFJH_06115 0.32 -2.3
1,235,508 + OLJFJH_06115 0.32 -3.0
1,235,532 + OLJFJH_06115 0.34 -0.7
1,235,743 - OLJFJH_06115 0.53 -3.1
1,235,743 - OLJFJH_06115 0.53 -2.5
1,235,751 + OLJFJH_06115 0.53 +0.3
1,235,752 - OLJFJH_06115 0.53 -3.3
1,235,879 + OLJFJH_06115 0.64 -4.5
1,235,879 + OLJFJH_06115 0.64 -1.0
1,235,880 - OLJFJH_06115 0.64 -2.7
1,235,880 - OLJFJH_06115 0.64 -1.7
1,235,980 - OLJFJH_06115 0.73 -3.2
1,235,980 - OLJFJH_06115 0.73 -3.4
1,235,980 - OLJFJH_06115 0.73 -2.7
1,236,099 + OLJFJH_06115 0.84 -2.2
1,236,099 + OLJFJH_06115 0.84 -3.1
1,236,100 - OLJFJH_06115 0.84 -1.0
1,236,475 + -3.5
1,236,475 + -2.1
1,236,483 + -1.9
1,236,484 - -2.2
1,236,545 + OLJFJH_06120 0.11 -3.7
1,236,550 + OLJFJH_06120 0.12 -3.9
1,237,033 + OLJFJH_06120 0.74 -3.1
1,237,034 - OLJFJH_06120 0.74 -3.0
1,237,235 + +0.4
1,237,240 - -2.8
1,237,240 - -2.8
1,237,240 - -3.1
1,237,244 + +0.6
1,237,244 + +0.3
1,237,245 - -2.3
1,237,245 - -3.1
1,237,354 + -3.7
1,237,355 - -3.5
1,237,355 - -3.6
1,237,355 - -2.0
1,237,528 + OLJFJH_06125 0.21 -4.1
1,237,540 + OLJFJH_06125 0.22 -3.4
1,237,540 + OLJFJH_06125 0.22 -3.3
1,237,540 + OLJFJH_06125 0.22 -1.5
1,237,541 - OLJFJH_06125 0.23 -2.5
1,237,589 + OLJFJH_06125 0.27 -1.5
1,237,590 - OLJFJH_06125 0.27 -4.4
1,237,590 - OLJFJH_06125 0.27 -3.5
1,237,675 + OLJFJH_06125 0.34 -1.6
1,237,675 + OLJFJH_06125 0.34 -0.3
1,237,675 + OLJFJH_06125 0.34 -4.2
1,237,676 - OLJFJH_06125 0.34 -4.4
1,237,676 - OLJFJH_06125 0.34 -3.4
1,238,082 + OLJFJH_06125 0.67 -3.6
1,238,083 - OLJFJH_06125 0.67 -4.7
1,238,122 - OLJFJH_06125 0.70 -3.0
1,238,175 + OLJFJH_06125 0.75 -0.3
1,238,175 + OLJFJH_06125 0.75 -0.3
1,238,176 - OLJFJH_06125 0.75 -1.9
1,238,209 + OLJFJH_06125 0.78 -4.4
1,238,209 + OLJFJH_06125 0.78 -3.0
1,238,209 + OLJFJH_06125 0.78 -2.0
1,238,209 + OLJFJH_06125 0.78 -2.4
1,238,209 + OLJFJH_06125 0.78 -3.2
1,238,209 + OLJFJH_06125 0.78 -1.0
1,238,210 - OLJFJH_06125 0.78 -3.5
1,238,218 + OLJFJH_06125 0.78 -3.8
1,238,219 - OLJFJH_06125 0.78 -2.7

Or see this region's nucleotide sequence