Strain Fitness in Erwinia amylovora T8 around OLJFJH_02615

Experiment: FE-G3T (Control flower group 3, top)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOLJFJH_02610 and OLJFJH_02615 are separated by 367 nucleotidesOLJFJH_02615 and OLJFJH_02620 are separated by 236 nucleotides OLJFJH_02610: OLJFJH_02610 - exclusion suppressor FxsA, at 471,950 to 472,408 _02610 OLJFJH_02615: OLJFJH_02615 - aspartate ammonia-lyase, at 472,776 to 474,212 _02615 OLJFJH_02620: OLJFJH_02620 - C4-dicarboxylate ABC transporter, at 474,449 to 475,750 _02620 Position (kb) 472 473 474 475Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 471.890 kb on + strandat 471.890 kb on + strandat 471.905 kb on - strandat 471.951 kb on + strandat 471.951 kb on + strandat 472.283 kb on + strand, within OLJFJH_02610at 472.283 kb on + strand, within OLJFJH_02610at 472.284 kb on - strand, within OLJFJH_02610at 472.284 kb on - strand, within OLJFJH_02610at 472.320 kb on - strand, within OLJFJH_02610at 472.385 kb on - strandat 472.385 kb on - strandat 472.421 kb on + strandat 472.421 kb on + strandat 472.422 kb on - strandat 472.481 kb on + strandat 472.481 kb on + strandat 472.482 kb on - strandat 472.482 kb on - strandat 472.482 kb on - strandat 472.482 kb on - strandat 472.482 kb on - strandat 472.482 kb on - strandat 472.485 kb on + strandat 472.639 kb on - strandat 472.639 kb on - strandat 472.700 kb on - strandat 472.748 kb on + strandat 472.749 kb on - strandat 472.749 kb on - strandat 472.785 kb on - strandat 472.839 kb on + strandat 472.853 kb on + strandat 472.853 kb on + strandat 472.854 kb on - strandat 472.854 kb on - strandat 472.854 kb on - strandat 472.883 kb on + strandat 472.884 kb on - strandat 472.905 kb on - strandat 472.937 kb on + strand, within OLJFJH_02615at 473.003 kb on + strand, within OLJFJH_02615at 473.043 kb on - strand, within OLJFJH_02615at 473.160 kb on + strand, within OLJFJH_02615at 473.160 kb on + strand, within OLJFJH_02615at 473.223 kb on - strand, within OLJFJH_02615at 473.321 kb on + strand, within OLJFJH_02615at 473.322 kb on - strand, within OLJFJH_02615at 473.322 kb on - strand, within OLJFJH_02615at 473.350 kb on + strand, within OLJFJH_02615at 473.419 kb on + strand, within OLJFJH_02615at 473.420 kb on - strand, within OLJFJH_02615at 473.420 kb on - strand, within OLJFJH_02615at 473.420 kb on - strand, within OLJFJH_02615at 473.420 kb on - strand, within OLJFJH_02615at 473.420 kb on - strand, within OLJFJH_02615at 473.424 kb on - strand, within OLJFJH_02615at 473.575 kb on + strand, within OLJFJH_02615at 473.605 kb on - strand, within OLJFJH_02615at 473.608 kb on + strand, within OLJFJH_02615at 473.609 kb on - strand, within OLJFJH_02615at 473.609 kb on - strand, within OLJFJH_02615at 473.609 kb on - strand, within OLJFJH_02615at 473.609 kb on - strand, within OLJFJH_02615at 473.609 kb on - strand, within OLJFJH_02615at 473.609 kb on - strand, within OLJFJH_02615at 473.857 kb on + strand, within OLJFJH_02615at 473.858 kb on - strand, within OLJFJH_02615at 473.858 kb on - strand, within OLJFJH_02615at 473.925 kb on + strand, within OLJFJH_02615at 473.926 kb on - strand, within OLJFJH_02615at 473.926 kb on - strand, within OLJFJH_02615at 473.985 kb on + strand, within OLJFJH_02615at 473.986 kb on - strand, within OLJFJH_02615at 473.994 kb on - strand, within OLJFJH_02615at 474.015 kb on + strand, within OLJFJH_02615at 474.174 kb on + strandat 474.174 kb on + strandat 474.176 kb on + strandat 474.339 kb on + strandat 474.354 kb on - strandat 474.358 kb on - strandat 474.358 kb on - strandat 474.398 kb on - strandat 474.399 kb on - strandat 474.411 kb on - strandat 474.411 kb on - strandat 474.431 kb on + strandat 474.434 kb on - strandat 474.434 kb on - strandat 474.434 kb on - strandat 474.434 kb on - strandat 474.436 kb on - strandat 474.448 kb on + strandat 474.448 kb on + strandat 474.454 kb on - strandat 474.553 kb on - strandat 474.662 kb on + strand, within OLJFJH_02620at 474.663 kb on - strand, within OLJFJH_02620at 474.707 kb on + strand, within OLJFJH_02620at 474.708 kb on - strand, within OLJFJH_02620at 474.709 kb on + strand, within OLJFJH_02620at 474.709 kb on + strand, within OLJFJH_02620at 474.710 kb on - strand, within OLJFJH_02620at 474.710 kb on - strand, within OLJFJH_02620at 474.717 kb on + strand, within OLJFJH_02620at 474.718 kb on - strand, within OLJFJH_02620at 474.738 kb on - strand, within OLJFJH_02620at 474.770 kb on - strand, within OLJFJH_02620at 474.941 kb on + strand, within OLJFJH_02620at 474.942 kb on - strand, within OLJFJH_02620at 475.009 kb on + strand, within OLJFJH_02620at 475.010 kb on - strand, within OLJFJH_02620at 475.159 kb on - strand, within OLJFJH_02620

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction FE-G3T (Control flower group 3, top)
remove
471,890 + +0.6
471,890 + -0.0
471,905 - -0.3
471,951 + +0.1
471,951 + -0.2
472,283 + OLJFJH_02610 0.73 -0.2
472,283 + OLJFJH_02610 0.73 -1.1
472,284 - OLJFJH_02610 0.73 +0.8
472,284 - OLJFJH_02610 0.73 +0.9
472,320 - OLJFJH_02610 0.81 +1.4
472,385 - +0.3
472,385 - +1.0
472,421 + +1.1
472,421 + +0.2
472,422 - +0.1
472,481 + +2.9
472,481 + +0.6
472,482 - +0.2
472,482 - -0.6
472,482 - -0.3
472,482 - +0.2
472,482 - -1.8
472,482 - +4.8
472,485 + +0.2
472,639 - -0.5
472,639 - -0.9
472,700 - +0.0
472,748 + +1.5
472,749 - +0.1
472,749 - -0.5
472,785 - -0.1
472,839 + +0.1
472,853 + +0.1
472,853 + +0.0
472,854 - -0.5
472,854 - -0.9
472,854 - +0.0
472,883 + +0.1
472,884 - +0.4
472,905 - +0.0
472,937 + OLJFJH_02615 0.11 +0.3
473,003 + OLJFJH_02615 0.16 -0.2
473,043 - OLJFJH_02615 0.19 -0.1
473,160 + OLJFJH_02615 0.27 +0.7
473,160 + OLJFJH_02615 0.27 +0.2
473,223 - OLJFJH_02615 0.31 -0.8
473,321 + OLJFJH_02615 0.38 +1.0
473,322 - OLJFJH_02615 0.38 +0.1
473,322 - OLJFJH_02615 0.38 +0.8
473,350 + OLJFJH_02615 0.40 +0.9
473,419 + OLJFJH_02615 0.45 -0.7
473,420 - OLJFJH_02615 0.45 +0.1
473,420 - OLJFJH_02615 0.45 +2.3
473,420 - OLJFJH_02615 0.45 +0.2
473,420 - OLJFJH_02615 0.45 +1.2
473,420 - OLJFJH_02615 0.45 -0.4
473,424 - OLJFJH_02615 0.45 -0.3
473,575 + OLJFJH_02615 0.56 -0.1
473,605 - OLJFJH_02615 0.58 -0.3
473,608 + OLJFJH_02615 0.58 +0.7
473,609 - OLJFJH_02615 0.58 -0.2
473,609 - OLJFJH_02615 0.58 -0.7
473,609 - OLJFJH_02615 0.58 +0.3
473,609 - OLJFJH_02615 0.58 -0.1
473,609 - OLJFJH_02615 0.58 +0.5
473,609 - OLJFJH_02615 0.58 +2.5
473,857 + OLJFJH_02615 0.75 +1.4
473,858 - OLJFJH_02615 0.75 +0.5
473,858 - OLJFJH_02615 0.75 +0.2
473,925 + OLJFJH_02615 0.80 +1.3
473,926 - OLJFJH_02615 0.80 +0.1
473,926 - OLJFJH_02615 0.80 -0.2
473,985 + OLJFJH_02615 0.84 +0.1
473,986 - OLJFJH_02615 0.84 +1.5
473,994 - OLJFJH_02615 0.85 +1.1
474,015 + OLJFJH_02615 0.86 -0.4
474,174 + +0.5
474,174 + -0.4
474,176 + -0.2
474,339 + +0.2
474,354 - +0.4
474,358 - -0.0
474,358 - +0.2
474,398 - +0.1
474,399 - -2.0
474,411 - -0.5
474,411 - -0.0
474,431 + -1.6
474,434 - +0.4
474,434 - -0.5
474,434 - +0.3
474,434 - -0.4
474,436 - -0.2
474,448 + +1.4
474,448 + +0.5
474,454 - -0.4
474,553 - -0.1
474,662 + OLJFJH_02620 0.16 -0.4
474,663 - OLJFJH_02620 0.16 +1.1
474,707 + OLJFJH_02620 0.20 +0.5
474,708 - OLJFJH_02620 0.20 +0.4
474,709 + OLJFJH_02620 0.20 +0.1
474,709 + OLJFJH_02620 0.20 -0.2
474,710 - OLJFJH_02620 0.20 -0.1
474,710 - OLJFJH_02620 0.20 +0.1
474,717 + OLJFJH_02620 0.21 +2.2
474,718 - OLJFJH_02620 0.21 +0.1
474,738 - OLJFJH_02620 0.22 -0.2
474,770 - OLJFJH_02620 0.25 +0.5
474,941 + OLJFJH_02620 0.38 -0.7
474,942 - OLJFJH_02620 0.38 +0.6
475,009 + OLJFJH_02620 0.43 -0.9
475,010 - OLJFJH_02620 0.43 -1.7
475,159 - OLJFJH_02620 0.55 -0.1

Or see this region's nucleotide sequence