Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06965 and MPMX19_06966 are separated by 62 nucleotides MPMX19_06966 and MPMX19_06967 are separated by 138 nucleotides MPMX19_06967 and MPMX19_06968 are separated by 217 nucleotides
MPMX19_06965: MPMX19_06965 - hypothetical protein, at 242,898 to 243,314
_06965
MPMX19_06966: MPMX19_06966 - hypothetical protein, at 243,377 to 244,135
_06966
MPMX19_06967: MPMX19_06967 - hypothetical protein, at 244,274 to 245,032
_06967
MPMX19_06968: MPMX19_06968 - hypothetical protein, at 245,250 to 246,743
_06968
Position (kb) 244
245
246 Strain fitness (log2 ratio) -2
-1
0
1
2 at 243.312 kb on + strand at 243.312 kb on + strand at 243.313 kb on - strand at 243.313 kb on - strand at 243.313 kb on - strand at 243.398 kb on + strand at 243.398 kb on + strand at 243.399 kb on - strand at 243.399 kb on - strand at 243.399 kb on - strand at 243.603 kb on + strand, within MPMX19_06966 at 243.628 kb on + strand, within MPMX19_06966 at 243.716 kb on - strand, within MPMX19_06966 at 243.773 kb on - strand, within MPMX19_06966 at 243.776 kb on + strand, within MPMX19_06966 at 243.780 kb on + strand, within MPMX19_06966 at 244.109 kb on + strand at 244.109 kb on + strand at 244.141 kb on + strand at 244.141 kb on + strand at 244.141 kb on + strand at 244.142 kb on - strand at 244.142 kb on - strand at 244.142 kb on - strand at 244.142 kb on - strand at 244.242 kb on - strand at 244.242 kb on - strand at 244.242 kb on - strand at 244.242 kb on - strand at 244.295 kb on + strand at 244.295 kb on + strand at 244.295 kb on + strand at 244.295 kb on + strand at 244.295 kb on + strand at 244.295 kb on + strand at 244.296 kb on - strand at 244.296 kb on - strand at 244.296 kb on - strand at 244.296 kb on - strand at 244.296 kb on - strand at 244.296 kb on - strand at 244.296 kb on - strand at 244.296 kb on - strand at 244.297 kb on + strand at 244.297 kb on + strand at 244.298 kb on - strand at 244.516 kb on + strand, within MPMX19_06967 at 244.557 kb on + strand, within MPMX19_06967 at 244.624 kb on + strand, within MPMX19_06967 at 244.726 kb on - strand, within MPMX19_06967 at 245.006 kb on + strand at 245.006 kb on + strand at 245.006 kb on + strand at 245.006 kb on + strand at 245.006 kb on + strand at 245.006 kb on + strand at 245.006 kb on + strand at 245.006 kb on + strand at 245.007 kb on - strand at 245.163 kb on + strand at 245.164 kb on - strand at 245.164 kb on - strand at 245.178 kb on + strand at 245.179 kb on - strand at 245.179 kb on - strand at 245.179 kb on - strand at 245.328 kb on + strand at 245.328 kb on + strand at 245.403 kb on + strand, within MPMX19_06968 at 245.403 kb on + strand, within MPMX19_06968 at 245.403 kb on + strand, within MPMX19_06968 at 245.403 kb on + strand, within MPMX19_06968 at 245.403 kb on + strand, within MPMX19_06968 at 245.404 kb on - strand, within MPMX19_06968 at 245.404 kb on - strand, within MPMX19_06968 at 245.423 kb on + strand, within MPMX19_06968 at 245.423 kb on + strand, within MPMX19_06968 at 245.424 kb on - strand, within MPMX19_06968 at 245.442 kb on + strand, within MPMX19_06968 at 245.442 kb on + strand, within MPMX19_06968 at 245.442 kb on + strand, within MPMX19_06968 at 245.466 kb on + strand, within MPMX19_06968 at 245.466 kb on + strand, within MPMX19_06968 at 245.466 kb on + strand, within MPMX19_06968 at 245.466 kb on + strand, within MPMX19_06968 at 245.466 kb on + strand, within MPMX19_06968 at 245.467 kb on - strand, within MPMX19_06968 at 245.467 kb on - strand, within MPMX19_06968 at 245.775 kb on + strand, within MPMX19_06968 at 245.776 kb on - strand, within MPMX19_06968 at 245.776 kb on - strand, within MPMX19_06968 at 245.776 kb on - strand, within MPMX19_06968 at 245.835 kb on + strand, within MPMX19_06968 at 245.835 kb on + strand, within MPMX19_06968 at 245.835 kb on + strand, within MPMX19_06968 at 245.836 kb on - strand, within MPMX19_06968 at 245.836 kb on - strand, within MPMX19_06968 at 245.836 kb on - strand, within MPMX19_06968 at 245.836 kb on - strand, within MPMX19_06968
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 243,312 + +0.2 243,312 + +0.8 243,313 - +0.9 243,313 - +0.1 243,313 - -2.1 243,398 + +0.9 243,398 + -0.5 243,399 - -0.1 243,399 - -1.3 243,399 - -0.9 243,603 + MPMX19_06966 0.30 +0.2 243,628 + MPMX19_06966 0.33 -0.7 243,716 - MPMX19_06966 0.45 -1.1 243,773 - MPMX19_06966 0.52 +1.8 243,776 + MPMX19_06966 0.53 +0.7 243,780 + MPMX19_06966 0.53 -2.2 244,109 + -1.6 244,109 + +1.0 244,141 + -0.1 244,141 + -0.2 244,141 + -0.5 244,142 - +0.9 244,142 - -0.5 244,142 - +0.3 244,142 - -2.5 244,242 - -0.9 244,242 - -0.8 244,242 - -0.8 244,242 - +0.0 244,295 + -0.1 244,295 + -1.1 244,295 + -1.0 244,295 + -0.7 244,295 + -0.2 244,295 + -1.0 244,296 - -0.9 244,296 - +0.5 244,296 - +0.5 244,296 - -0.1 244,296 - -0.9 244,296 - +0.5 244,296 - -0.5 244,296 - +0.3 244,297 + -0.1 244,297 + +0.5 244,298 - +0.3 244,516 + MPMX19_06967 0.32 -1.8 244,557 + MPMX19_06967 0.37 -0.4 244,624 + MPMX19_06967 0.46 -1.9 244,726 - MPMX19_06967 0.60 -1.3 245,006 + -0.7 245,006 + -0.6 245,006 + +0.9 245,006 + -1.1 245,006 + -0.8 245,006 + -0.9 245,006 + -1.5 245,006 + -0.5 245,007 - +0.0 245,163 + -1.1 245,164 - +1.3 245,164 - -0.8 245,178 + +0.1 245,179 - -1.4 245,179 - -0.1 245,179 - -0.5 245,328 + +0.7 245,328 + -0.5 245,403 + MPMX19_06968 0.10 -1.6 245,403 + MPMX19_06968 0.10 +0.9 245,403 + MPMX19_06968 0.10 +0.4 245,403 + MPMX19_06968 0.10 -1.1 245,403 + MPMX19_06968 0.10 -0.1 245,404 - MPMX19_06968 0.10 +1.0 245,404 - MPMX19_06968 0.10 -1.6 245,423 + MPMX19_06968 0.12 -1.1 245,423 + MPMX19_06968 0.12 -0.6 245,424 - MPMX19_06968 0.12 -0.6 245,442 + MPMX19_06968 0.13 -0.1 245,442 + MPMX19_06968 0.13 +1.1 245,442 + MPMX19_06968 0.13 +0.4 245,466 + MPMX19_06968 0.14 +0.4 245,466 + MPMX19_06968 0.14 -1.8 245,466 + MPMX19_06968 0.14 +0.0 245,466 + MPMX19_06968 0.14 -0.3 245,466 + MPMX19_06968 0.14 +0.8 245,467 - MPMX19_06968 0.15 +0.4 245,467 - MPMX19_06968 0.15 +0.1 245,775 + MPMX19_06968 0.35 -1.5 245,776 - MPMX19_06968 0.35 -1.1 245,776 - MPMX19_06968 0.35 -2.2 245,776 - MPMX19_06968 0.35 +0.5 245,835 + MPMX19_06968 0.39 -0.3 245,835 + MPMX19_06968 0.39 +0.3 245,835 + MPMX19_06968 0.39 -0.8 245,836 - MPMX19_06968 0.39 -1.4 245,836 - MPMX19_06968 0.39 -0.4 245,836 - MPMX19_06968 0.39 +0.5 245,836 - MPMX19_06968 0.39 -0.3
Or see this region's nucleotide sequence