Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06928

Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06926 and MPMX19_06927 are separated by 26 nucleotidesMPMX19_06927 and MPMX19_06928 are separated by 42 nucleotidesMPMX19_06928 and MPMX19_06929 are separated by 308 nucleotidesMPMX19_06929 and MPMX19_06930 are separated by 316 nucleotides MPMX19_06926: MPMX19_06926 - hypothetical protein, at 201,714 to 202,046 _06926 MPMX19_06927: MPMX19_06927 - FMN-dependent NADH-azoreductase 1, at 202,073 to 202,705 _06927 MPMX19_06928: MPMX19_06928 - hypothetical protein, at 202,748 to 203,020 _06928 MPMX19_06929: MPMX19_06929 - hypothetical protein, at 203,329 to 203,646 _06929 MPMX19_06930: MPMX19_06930 - Sensor kinase CckA, at 203,963 to 204,331 _06930 Position (kb) 202 203 204Strain fitness (log2 ratio) -2 -1 0 1at 201.899 kb on + strand, within MPMX19_06926at 201.899 kb on + strand, within MPMX19_06926at 201.900 kb on - strand, within MPMX19_06926at 201.900 kb on - strand, within MPMX19_06926at 201.958 kb on + strand, within MPMX19_06926at 201.958 kb on + strand, within MPMX19_06926at 201.958 kb on + strand, within MPMX19_06926at 201.959 kb on - strand, within MPMX19_06926at 201.959 kb on - strand, within MPMX19_06926at 201.959 kb on - strand, within MPMX19_06926at 201.959 kb on - strand, within MPMX19_06926at 201.959 kb on - strand, within MPMX19_06926at 202.021 kb on + strandat 202.021 kb on + strandat 202.021 kb on + strandat 202.022 kb on - strandat 202.022 kb on - strandat 202.075 kb on - strandat 202.075 kb on - strandat 202.075 kb on - strandat 202.218 kb on + strand, within MPMX19_06927at 202.230 kb on + strand, within MPMX19_06927at 202.230 kb on + strand, within MPMX19_06927at 202.230 kb on + strand, within MPMX19_06927at 202.231 kb on - strand, within MPMX19_06927at 202.231 kb on - strand, within MPMX19_06927at 202.231 kb on - strand, within MPMX19_06927at 202.272 kb on + strand, within MPMX19_06927at 202.272 kb on + strand, within MPMX19_06927at 202.273 kb on - strand, within MPMX19_06927at 202.273 kb on - strand, within MPMX19_06927at 202.344 kb on + strand, within MPMX19_06927at 202.344 kb on + strand, within MPMX19_06927at 202.344 kb on + strand, within MPMX19_06927at 202.344 kb on + strand, within MPMX19_06927at 202.345 kb on - strand, within MPMX19_06927at 202.345 kb on - strand, within MPMX19_06927at 202.404 kb on - strand, within MPMX19_06927at 202.416 kb on + strand, within MPMX19_06927at 202.416 kb on + strand, within MPMX19_06927at 202.416 kb on + strand, within MPMX19_06927at 202.416 kb on + strand, within MPMX19_06927at 202.416 kb on + strand, within MPMX19_06927at 202.417 kb on - strand, within MPMX19_06927at 202.417 kb on - strand, within MPMX19_06927at 202.417 kb on - strand, within MPMX19_06927at 202.855 kb on + strand, within MPMX19_06928at 202.856 kb on - strand, within MPMX19_06928at 202.918 kb on - strand, within MPMX19_06928at 202.918 kb on - strand, within MPMX19_06928at 202.918 kb on - strand, within MPMX19_06928at 203.221 kb on + strandat 203.221 kb on + strandat 203.378 kb on + strand, within MPMX19_06929at 203.435 kb on + strand, within MPMX19_06929at 203.436 kb on - strand, within MPMX19_06929at 203.436 kb on - strand, within MPMX19_06929at 203.436 kb on - strand, within MPMX19_06929at 203.436 kb on - strand, within MPMX19_06929at 203.436 kb on - strand, within MPMX19_06929at 203.775 kb on + strandat 203.776 kb on - strandat 203.810 kb on + strandat 203.811 kb on - strandat 203.826 kb on + strandat 203.843 kb on - strandat 203.862 kb on + strandat 203.863 kb on - strandat 203.863 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
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201,899 + MPMX19_06926 0.56 +0.8
201,899 + MPMX19_06926 0.56 +0.4
201,900 - MPMX19_06926 0.56 +0.1
201,900 - MPMX19_06926 0.56 -0.9
201,958 + MPMX19_06926 0.73 +0.5
201,958 + MPMX19_06926 0.73 -0.1
201,958 + MPMX19_06926 0.73 -2.1
201,959 - MPMX19_06926 0.74 -1.2
201,959 - MPMX19_06926 0.74 +0.2
201,959 - MPMX19_06926 0.74 -1.0
201,959 - MPMX19_06926 0.74 -1.1
201,959 - MPMX19_06926 0.74 -1.2
202,021 + -0.2
202,021 + +0.6
202,021 + -0.9
202,022 - -0.8
202,022 - -0.5
202,075 - -0.5
202,075 - -1.9
202,075 - +0.3
202,218 + MPMX19_06927 0.23 -1.0
202,230 + MPMX19_06927 0.25 +0.8
202,230 + MPMX19_06927 0.25 -0.6
202,230 + MPMX19_06927 0.25 +1.1
202,231 - MPMX19_06927 0.25 -0.3
202,231 - MPMX19_06927 0.25 -0.1
202,231 - MPMX19_06927 0.25 -0.7
202,272 + MPMX19_06927 0.31 -0.9
202,272 + MPMX19_06927 0.31 -0.7
202,273 - MPMX19_06927 0.32 -0.6
202,273 - MPMX19_06927 0.32 -0.1
202,344 + MPMX19_06927 0.43 -1.8
202,344 + MPMX19_06927 0.43 -1.4
202,344 + MPMX19_06927 0.43 +0.2
202,344 + MPMX19_06927 0.43 +0.1
202,345 - MPMX19_06927 0.43 -0.8
202,345 - MPMX19_06927 0.43 -1.1
202,404 - MPMX19_06927 0.52 +0.5
202,416 + MPMX19_06927 0.54 -0.4
202,416 + MPMX19_06927 0.54 -1.4
202,416 + MPMX19_06927 0.54 +0.5
202,416 + MPMX19_06927 0.54 -1.5
202,416 + MPMX19_06927 0.54 -0.3
202,417 - MPMX19_06927 0.54 -1.4
202,417 - MPMX19_06927 0.54 -1.3
202,417 - MPMX19_06927 0.54 -1.1
202,855 + MPMX19_06928 0.39 -1.9
202,856 - MPMX19_06928 0.40 -1.6
202,918 - MPMX19_06928 0.62 -1.1
202,918 - MPMX19_06928 0.62 -0.5
202,918 - MPMX19_06928 0.62 -0.2
203,221 + -0.9
203,221 + +0.1
203,378 + MPMX19_06929 0.15 -1.0
203,435 + MPMX19_06929 0.33 +0.9
203,436 - MPMX19_06929 0.34 +0.0
203,436 - MPMX19_06929 0.34 +0.9
203,436 - MPMX19_06929 0.34 +0.9
203,436 - MPMX19_06929 0.34 -1.4
203,436 - MPMX19_06929 0.34 -1.6
203,775 + -0.9
203,776 - -2.6
203,810 + +0.5
203,811 - -0.9
203,826 + -0.5
203,843 - +0.3
203,862 + -1.9
203,863 - -1.3
203,863 - +0.7

Or see this region's nucleotide sequence