Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06814 and MPMX19_06815 are separated by 62 nucleotides MPMX19_06815 and MPMX19_06816 are separated by 98 nucleotides
MPMX19_06814: MPMX19_06814 - Glyoxylate/hydroxypyruvate reductase A, at 79,955 to 80,902
_06814
MPMX19_06815: MPMX19_06815 - hypothetical protein, at 80,965 to 81,561
_06815
MPMX19_06816: MPMX19_06816 - Glycine betaine-binding periplasmic protein OusX, at 81,660 to 82,697
_06816
Position (kb) 80
81
82 Strain fitness (log2 ratio) -2
-1
0
1 at 80.908 kb on + strand at 80.908 kb on + strand at 80.908 kb on + strand at 80.908 kb on + strand at 80.910 kb on + strand at 80.910 kb on + strand at 80.911 kb on - strand at 80.911 kb on - strand at 80.911 kb on - strand at 80.911 kb on - strand at 81.320 kb on + strand, within MPMX19_06815 at 81.320 kb on + strand, within MPMX19_06815 at 81.320 kb on + strand, within MPMX19_06815 at 81.321 kb on - strand, within MPMX19_06815 at 81.321 kb on - strand, within MPMX19_06815 at 81.321 kb on - strand, within MPMX19_06815 at 81.321 kb on - strand, within MPMX19_06815 at 82.063 kb on + strand, within MPMX19_06816 at 82.063 kb on + strand, within MPMX19_06816 at 82.064 kb on - strand, within MPMX19_06816 at 82.123 kb on + strand, within MPMX19_06816 at 82.123 kb on + strand, within MPMX19_06816 at 82.123 kb on + strand, within MPMX19_06816 at 82.123 kb on + strand, within MPMX19_06816 at 82.123 kb on + strand, within MPMX19_06816 at 82.123 kb on + strand, within MPMX19_06816 at 82.124 kb on - strand, within MPMX19_06816 at 82.124 kb on - strand, within MPMX19_06816 at 82.124 kb on - strand, within MPMX19_06816 at 82.505 kb on - strand, within MPMX19_06816 at 82.549 kb on + strand, within MPMX19_06816 at 82.549 kb on + strand, within MPMX19_06816 at 82.549 kb on + strand, within MPMX19_06816 at 82.549 kb on + strand, within MPMX19_06816 at 82.549 kb on + strand, within MPMX19_06816 at 82.549 kb on + strand, within MPMX19_06816 at 82.549 kb on + strand, within MPMX19_06816 at 82.549 kb on + strand, within MPMX19_06816 at 82.549 kb on + strand, within MPMX19_06816 at 82.549 kb on + strand, within MPMX19_06816 at 82.549 kb on + strand, within MPMX19_06816 at 82.549 kb on + strand, within MPMX19_06816 at 82.549 kb on + strand, within MPMX19_06816 at 82.550 kb on - strand, within MPMX19_06816 at 82.550 kb on - strand, within MPMX19_06816 at 82.550 kb on - strand, within MPMX19_06816 at 82.550 kb on - strand, within MPMX19_06816 at 82.550 kb on - strand, within MPMX19_06816 at 82.550 kb on - strand, within MPMX19_06816 at 82.550 kb on - strand, within MPMX19_06816
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 80,908 + -0.6 80,908 + +0.7 80,908 + -0.6 80,908 + -0.2 80,910 + +0.2 80,910 + +0.5 80,911 - -0.8 80,911 - -0.6 80,911 - +0.4 80,911 - -0.6 81,320 + MPMX19_06815 0.59 -0.6 81,320 + MPMX19_06815 0.59 -0.9 81,320 + MPMX19_06815 0.59 -1.5 81,321 - MPMX19_06815 0.60 -1.3 81,321 - MPMX19_06815 0.60 -2.1 81,321 - MPMX19_06815 0.60 -0.5 81,321 - MPMX19_06815 0.60 +0.0 82,063 + MPMX19_06816 0.39 -0.3 82,063 + MPMX19_06816 0.39 +0.9 82,064 - MPMX19_06816 0.39 -0.3 82,123 + MPMX19_06816 0.45 +0.7 82,123 + MPMX19_06816 0.45 -0.3 82,123 + MPMX19_06816 0.45 -0.6 82,123 + MPMX19_06816 0.45 -0.8 82,123 + MPMX19_06816 0.45 +1.0 82,123 + MPMX19_06816 0.45 -2.5 82,124 - MPMX19_06816 0.45 +0.4 82,124 - MPMX19_06816 0.45 +0.6 82,124 - MPMX19_06816 0.45 -0.8 82,505 - MPMX19_06816 0.81 -0.9 82,549 + MPMX19_06816 0.86 -0.8 82,549 + MPMX19_06816 0.86 +0.6 82,549 + MPMX19_06816 0.86 -1.4 82,549 + MPMX19_06816 0.86 -0.2 82,549 + MPMX19_06816 0.86 -0.8 82,549 + MPMX19_06816 0.86 -1.9 82,549 + MPMX19_06816 0.86 -0.9 82,549 + MPMX19_06816 0.86 -0.1 82,549 + MPMX19_06816 0.86 +0.3 82,549 + MPMX19_06816 0.86 +0.2 82,549 + MPMX19_06816 0.86 -1.1 82,549 + MPMX19_06816 0.86 +0.3 82,549 + MPMX19_06816 0.86 -2.6 82,550 - MPMX19_06816 0.86 +1.5 82,550 - MPMX19_06816 0.86 -0.1 82,550 - MPMX19_06816 0.86 -2.1 82,550 - MPMX19_06816 0.86 -1.5 82,550 - MPMX19_06816 0.86 +0.5 82,550 - MPMX19_06816 0.86 -0.7 82,550 - MPMX19_06816 0.86 +0.4
Or see this region's nucleotide sequence