Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06768 and MPMX19_06769 overlap by 4 nucleotides MPMX19_06769 and MPMX19_06770 are separated by 14 nucleotides MPMX19_06770 and MPMX19_06771 overlap by 4 nucleotides MPMX19_06771 and MPMX19_06772 are separated by 26 nucleotides
MPMX19_06768: MPMX19_06768 - hypothetical protein, at 34,782 to 35,804
_06768
MPMX19_06769: MPMX19_06769 - hypothetical protein, at 35,801 to 36,781
_06769
MPMX19_06770: MPMX19_06770 - NAD-dependent glycerol dehydrogenase, at 36,796 to 37,614
_06770
MPMX19_06771: MPMX19_06771 - hypothetical protein, at 37,611 to 38,417
_06771
MPMX19_06772: MPMX19_06772 - hypothetical protein, at 38,444 to 39,004
_06772
Position (kb) 36
37
38 Strain fitness (log2 ratio) -2
-1
0
1
2 at 35.910 kb on - strand, within MPMX19_06769 at 35.963 kb on + strand, within MPMX19_06769 at 35.963 kb on + strand, within MPMX19_06769 at 35.964 kb on - strand, within MPMX19_06769 at 36.377 kb on + strand, within MPMX19_06769 at 36.378 kb on - strand, within MPMX19_06769 at 36.378 kb on - strand, within MPMX19_06769 at 36.398 kb on + strand, within MPMX19_06769 at 36.398 kb on + strand, within MPMX19_06769 at 36.398 kb on + strand, within MPMX19_06769 at 36.398 kb on + strand, within MPMX19_06769 at 36.399 kb on - strand, within MPMX19_06769 at 36.399 kb on - strand, within MPMX19_06769 at 36.399 kb on - strand, within MPMX19_06769 at 36.399 kb on - strand, within MPMX19_06769 at 36.536 kb on + strand, within MPMX19_06769 at 36.536 kb on + strand, within MPMX19_06769 at 36.536 kb on + strand, within MPMX19_06769 at 36.536 kb on + strand, within MPMX19_06769 at 36.536 kb on + strand, within MPMX19_06769 at 36.536 kb on + strand, within MPMX19_06769 at 36.537 kb on - strand, within MPMX19_06769 at 36.537 kb on - strand, within MPMX19_06769 at 36.579 kb on - strand, within MPMX19_06769 at 36.641 kb on + strand, within MPMX19_06769 at 36.642 kb on - strand, within MPMX19_06769 at 37.150 kb on + strand, within MPMX19_06770 at 37.150 kb on + strand, within MPMX19_06770 at 37.150 kb on + strand, within MPMX19_06770 at 37.150 kb on + strand, within MPMX19_06770 at 37.150 kb on + strand, within MPMX19_06770 at 37.150 kb on + strand, within MPMX19_06770 at 37.151 kb on - strand, within MPMX19_06770 at 37.151 kb on - strand, within MPMX19_06770 at 37.151 kb on - strand, within MPMX19_06770 at 37.151 kb on - strand, within MPMX19_06770 at 37.151 kb on - strand, within MPMX19_06770 at 37.151 kb on - strand, within MPMX19_06770 at 37.153 kb on + strand, within MPMX19_06770 at 37.153 kb on + strand, within MPMX19_06770 at 37.153 kb on + strand, within MPMX19_06770 at 37.154 kb on - strand, within MPMX19_06770 at 37.154 kb on - strand, within MPMX19_06770 at 37.154 kb on - strand, within MPMX19_06770 at 37.255 kb on + strand, within MPMX19_06770 at 37.255 kb on + strand, within MPMX19_06770 at 37.255 kb on + strand, within MPMX19_06770 at 37.255 kb on + strand, within MPMX19_06770 at 37.256 kb on - strand, within MPMX19_06770 at 37.558 kb on + strand at 37.558 kb on + strand at 37.558 kb on + strand at 37.558 kb on + strand at 37.558 kb on + strand at 37.632 kb on + strand at 37.632 kb on + strand at 37.632 kb on + strand at 37.632 kb on + strand at 37.633 kb on - strand at 37.633 kb on - strand at 37.633 kb on - strand at 37.633 kb on - strand at 37.635 kb on + strand at 37.635 kb on + strand at 37.635 kb on + strand at 37.635 kb on + strand at 37.636 kb on - strand at 37.636 kb on - strand at 37.636 kb on - strand at 37.636 kb on - strand at 37.636 kb on - strand at 38.109 kb on + strand, within MPMX19_06771 at 38.109 kb on + strand, within MPMX19_06771 at 38.109 kb on + strand, within MPMX19_06771 at 38.110 kb on - strand, within MPMX19_06771 at 38.110 kb on - strand, within MPMX19_06771 at 38.110 kb on - strand, within MPMX19_06771 at 38.110 kb on - strand, within MPMX19_06771 at 38.110 kb on - strand, within MPMX19_06771 at 38.110 kb on - strand, within MPMX19_06771 at 38.169 kb on + strand, within MPMX19_06771 at 38.169 kb on + strand, within MPMX19_06771 at 38.169 kb on + strand, within MPMX19_06771 at 38.169 kb on + strand, within MPMX19_06771 at 38.169 kb on + strand, within MPMX19_06771 at 38.169 kb on + strand, within MPMX19_06771 at 38.169 kb on + strand, within MPMX19_06771 at 38.170 kb on - strand, within MPMX19_06771 at 38.170 kb on - strand, within MPMX19_06771 at 38.170 kb on - strand, within MPMX19_06771 at 38.170 kb on - strand, within MPMX19_06771 at 38.170 kb on - strand, within MPMX19_06771
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 35,910 - MPMX19_06769 0.11 -1.8 35,963 + MPMX19_06769 0.17 +0.7 35,963 + MPMX19_06769 0.17 +0.4 35,964 - MPMX19_06769 0.17 +0.4 36,377 + MPMX19_06769 0.59 -1.1 36,378 - MPMX19_06769 0.59 -1.6 36,378 - MPMX19_06769 0.59 -1.1 36,398 + MPMX19_06769 0.61 -0.5 36,398 + MPMX19_06769 0.61 +2.5 36,398 + MPMX19_06769 0.61 -0.5 36,398 + MPMX19_06769 0.61 -0.5 36,399 - MPMX19_06769 0.61 -0.3 36,399 - MPMX19_06769 0.61 -0.8 36,399 - MPMX19_06769 0.61 -1.1 36,399 - MPMX19_06769 0.61 -0.1 36,536 + MPMX19_06769 0.75 -0.5 36,536 + MPMX19_06769 0.75 -0.4 36,536 + MPMX19_06769 0.75 -1.1 36,536 + MPMX19_06769 0.75 -1.9 36,536 + MPMX19_06769 0.75 +0.8 36,536 + MPMX19_06769 0.75 -0.5 36,537 - MPMX19_06769 0.75 -1.8 36,537 - MPMX19_06769 0.75 -0.1 36,579 - MPMX19_06769 0.79 +0.7 36,641 + MPMX19_06769 0.86 -1.7 36,642 - MPMX19_06769 0.86 +0.1 37,150 + MPMX19_06770 0.43 +0.2 37,150 + MPMX19_06770 0.43 +0.7 37,150 + MPMX19_06770 0.43 +1.0 37,150 + MPMX19_06770 0.43 +1.3 37,150 + MPMX19_06770 0.43 +0.4 37,150 + MPMX19_06770 0.43 -1.8 37,151 - MPMX19_06770 0.43 +0.8 37,151 - MPMX19_06770 0.43 -1.3 37,151 - MPMX19_06770 0.43 -0.1 37,151 - MPMX19_06770 0.43 -0.9 37,151 - MPMX19_06770 0.43 +0.0 37,151 - MPMX19_06770 0.43 -1.5 37,153 + MPMX19_06770 0.44 -1.6 37,153 + MPMX19_06770 0.44 -0.4 37,153 + MPMX19_06770 0.44 +0.0 37,154 - MPMX19_06770 0.44 +1.2 37,154 - MPMX19_06770 0.44 -1.0 37,154 - MPMX19_06770 0.44 +0.3 37,255 + MPMX19_06770 0.56 -1.1 37,255 + MPMX19_06770 0.56 -1.1 37,255 + MPMX19_06770 0.56 -0.8 37,255 + MPMX19_06770 0.56 -2.3 37,256 - MPMX19_06770 0.56 +0.2 37,558 + +1.7 37,558 + +0.7 37,558 + +0.3 37,558 + -2.2 37,558 + -0.6 37,632 + -2.2 37,632 + +0.8 37,632 + -0.1 37,632 + -1.3 37,633 - +0.5 37,633 - -1.2 37,633 - +0.5 37,633 - -0.3 37,635 + -0.3 37,635 + -1.5 37,635 + +0.5 37,635 + +0.9 37,636 - +0.5 37,636 - +0.7 37,636 - -0.3 37,636 - +0.0 37,636 - -0.5 38,109 + MPMX19_06771 0.62 -0.2 38,109 + MPMX19_06771 0.62 -0.1 38,109 + MPMX19_06771 0.62 +0.3 38,110 - MPMX19_06771 0.62 -0.2 38,110 - MPMX19_06771 0.62 -1.1 38,110 - MPMX19_06771 0.62 +0.9 38,110 - MPMX19_06771 0.62 -0.8 38,110 - MPMX19_06771 0.62 -0.5 38,110 - MPMX19_06771 0.62 -0.9 38,169 + MPMX19_06771 0.69 +0.2 38,169 + MPMX19_06771 0.69 -1.0 38,169 + MPMX19_06771 0.69 -1.8 38,169 + MPMX19_06771 0.69 -1.8 38,169 + MPMX19_06771 0.69 -1.8 38,169 + MPMX19_06771 0.69 +1.2 38,169 + MPMX19_06771 0.69 -1.2 38,170 - MPMX19_06771 0.69 +0.9 38,170 - MPMX19_06771 0.69 -0.9 38,170 - MPMX19_06771 0.69 +0.7 38,170 - MPMX19_06771 0.69 -0.3 38,170 - MPMX19_06771 0.69 -0.3
Or see this region's nucleotide sequence