Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06736

Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06735 and MPMX19_06736 are separated by 23 nucleotidesMPMX19_06736 and MPMX19_06737 are separated by 19 nucleotides MPMX19_06735: MPMX19_06735 - hypothetical protein, at 1 to 1,188 _06735 MPMX19_06736: MPMX19_06736 - hypothetical protein, at 1,212 to 1,721 _06736 MPMX19_06737: MPMX19_06737 - 2-oxoisovalerate dehydrogenase subunit beta, at 1,741 to 2,712 _06737 Position (kb) 1 2Strain fitness (log2 ratio) -3 -2 -1 0 1at 1.318 kb on + strand, within MPMX19_06736at 1.319 kb on - strand, within MPMX19_06736at 1.333 kb on + strand, within MPMX19_06736at 1.333 kb on + strand, within MPMX19_06736at 1.334 kb on - strand, within MPMX19_06736at 1.334 kb on - strand, within MPMX19_06736at 1.618 kb on + strand, within MPMX19_06736at 1.618 kb on + strand, within MPMX19_06736at 1.619 kb on - strand, within MPMX19_06736at 1.619 kb on - strand, within MPMX19_06736at 1.619 kb on - strand, within MPMX19_06736at 1.700 kb on + strandat 1.701 kb on - strandat 1.701 kb on - strandat 1.702 kb on + strandat 1.702 kb on + strandat 1.702 kb on + strandat 1.703 kb on - strandat 1.703 kb on - strandat 1.703 kb on - strandat 1.721 kb on + strandat 1.721 kb on + strandat 1.721 kb on + strandat 1.721 kb on + strandat 1.721 kb on + strandat 1.722 kb on - strandat 1.722 kb on - strandat 1.722 kb on - strandat 1.722 kb on - strandat 2.198 kb on + strand, within MPMX19_06737at 2.199 kb on - strand, within MPMX19_06737at 2.199 kb on - strand, within MPMX19_06737at 2.423 kb on + strand, within MPMX19_06737at 2.423 kb on + strand, within MPMX19_06737at 2.424 kb on - strand, within MPMX19_06737at 2.424 kb on - strand, within MPMX19_06737at 2.424 kb on - strand, within MPMX19_06737at 2.424 kb on - strand, within MPMX19_06737at 2.424 kb on - strand, within MPMX19_06737at 2.424 kb on - strand, within MPMX19_06737at 2.465 kb on + strand, within MPMX19_06737at 2.465 kb on + strand, within MPMX19_06737

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
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1,318 + MPMX19_06736 0.21 -0.6
1,319 - MPMX19_06736 0.21 -0.3
1,333 + MPMX19_06736 0.24 -0.9
1,333 + MPMX19_06736 0.24 -1.3
1,334 - MPMX19_06736 0.24 -2.0
1,334 - MPMX19_06736 0.24 +0.4
1,618 + MPMX19_06736 0.80 -1.8
1,618 + MPMX19_06736 0.80 -0.6
1,619 - MPMX19_06736 0.80 -1.3
1,619 - MPMX19_06736 0.80 -0.2
1,619 - MPMX19_06736 0.80 -0.6
1,700 + -1.1
1,701 - -1.0
1,701 - +0.3
1,702 + -0.5
1,702 + -0.3
1,702 + +0.5
1,703 - +1.1
1,703 - -0.1
1,703 - +1.1
1,721 + -0.1
1,721 + -0.1
1,721 + -2.9
1,721 + -0.8
1,721 + -0.4
1,722 - -1.1
1,722 - +0.9
1,722 - -0.2
1,722 - -0.1
2,198 + MPMX19_06737 0.47 -3.2
2,199 - MPMX19_06737 0.47 -1.8
2,199 - MPMX19_06737 0.47 -0.5
2,423 + MPMX19_06737 0.70 +0.3
2,423 + MPMX19_06737 0.70 -0.5
2,424 - MPMX19_06737 0.70 +0.2
2,424 - MPMX19_06737 0.70 -0.6
2,424 - MPMX19_06737 0.70 +0.6
2,424 - MPMX19_06737 0.70 +0.2
2,424 - MPMX19_06737 0.70 -0.3
2,424 - MPMX19_06737 0.70 -0.1
2,465 + MPMX19_06737 0.74 +0.1
2,465 + MPMX19_06737 0.74 +0.5

Or see this region's nucleotide sequence