Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06452 and MPMX19_06453 overlap by 4 nucleotides MPMX19_06453 and MPMX19_06454 overlap by 8 nucleotides
MPMX19_06452: MPMX19_06452 - hypothetical protein, at 226,253 to 227,740
_06452
MPMX19_06453: MPMX19_06453 - hypothetical protein, at 227,737 to 228,612
_06453
MPMX19_06454: MPMX19_06454 - hypothetical protein, at 228,605 to 230,290
_06454
Position (kb) 227
228
229 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 226.774 kb on + strand, within MPMX19_06452 at 226.774 kb on + strand, within MPMX19_06452 at 226.775 kb on - strand, within MPMX19_06452 at 226.775 kb on - strand, within MPMX19_06452 at 226.820 kb on + strand, within MPMX19_06452 at 226.820 kb on + strand, within MPMX19_06452 at 226.821 kb on - strand, within MPMX19_06452 at 226.821 kb on - strand, within MPMX19_06452 at 226.821 kb on - strand, within MPMX19_06452 at 226.821 kb on - strand, within MPMX19_06452 at 226.821 kb on - strand, within MPMX19_06452 at 226.821 kb on - strand, within MPMX19_06452 at 227.000 kb on + strand, within MPMX19_06452 at 227.000 kb on + strand, within MPMX19_06452 at 227.000 kb on + strand, within MPMX19_06452 at 227.001 kb on - strand, within MPMX19_06452 at 227.001 kb on - strand, within MPMX19_06452 at 227.142 kb on + strand, within MPMX19_06452 at 227.142 kb on + strand, within MPMX19_06452 at 227.143 kb on - strand, within MPMX19_06452 at 227.269 kb on + strand, within MPMX19_06452 at 227.403 kb on + strand, within MPMX19_06452 at 227.403 kb on + strand, within MPMX19_06452 at 227.404 kb on - strand, within MPMX19_06452 at 227.404 kb on - strand, within MPMX19_06452 at 227.404 kb on - strand, within MPMX19_06452 at 227.404 kb on - strand, within MPMX19_06452 at 227.404 kb on - strand, within MPMX19_06452 at 227.404 kb on - strand, within MPMX19_06452 at 227.404 kb on - strand, within MPMX19_06452 at 227.613 kb on + strand at 227.613 kb on + strand at 227.613 kb on + strand at 227.613 kb on + strand at 227.613 kb on + strand at 227.613 kb on + strand at 227.613 kb on + strand at 227.613 kb on + strand at 227.613 kb on + strand at 227.613 kb on + strand at 227.613 kb on + strand at 227.614 kb on - strand at 227.614 kb on - strand at 227.614 kb on - strand at 227.614 kb on - strand at 227.614 kb on - strand at 227.614 kb on - strand at 227.614 kb on - strand at 227.614 kb on - strand at 227.614 kb on - strand at 227.614 kb on - strand at 227.614 kb on - strand at 227.614 kb on - strand at 227.614 kb on - strand at 227.634 kb on + strand at 227.634 kb on + strand at 227.635 kb on - strand at 227.635 kb on - strand at 227.635 kb on - strand at 227.635 kb on - strand at 227.707 kb on + strand at 227.707 kb on + strand at 227.707 kb on + strand at 227.707 kb on + strand at 227.708 kb on - strand at 227.708 kb on - strand at 227.708 kb on - strand at 227.708 kb on - strand at 227.708 kb on - strand at 227.708 kb on - strand at 227.708 kb on - strand at 227.728 kb on + strand at 227.728 kb on + strand at 227.728 kb on + strand at 227.728 kb on + strand at 227.729 kb on - strand at 227.729 kb on - strand at 227.729 kb on - strand at 227.729 kb on - strand at 227.729 kb on - strand at 227.762 kb on + strand at 227.762 kb on + strand at 227.762 kb on + strand at 227.762 kb on + strand at 227.762 kb on + strand at 227.762 kb on + strand at 227.762 kb on + strand at 227.762 kb on + strand at 227.762 kb on + strand at 227.762 kb on + strand at 227.763 kb on - strand at 227.763 kb on - strand at 227.763 kb on - strand at 227.763 kb on - strand at 227.763 kb on - strand at 227.763 kb on - strand at 228.009 kb on + strand, within MPMX19_06453 at 228.009 kb on + strand, within MPMX19_06453 at 228.010 kb on - strand, within MPMX19_06453 at 228.278 kb on + strand, within MPMX19_06453 at 228.278 kb on + strand, within MPMX19_06453 at 228.278 kb on + strand, within MPMX19_06453 at 228.278 kb on + strand, within MPMX19_06453 at 228.278 kb on + strand, within MPMX19_06453 at 228.278 kb on + strand, within MPMX19_06453 at 228.278 kb on + strand, within MPMX19_06453 at 228.278 kb on + strand, within MPMX19_06453 at 228.279 kb on - strand, within MPMX19_06453 at 228.279 kb on - strand, within MPMX19_06453 at 228.279 kb on - strand, within MPMX19_06453 at 228.279 kb on - strand, within MPMX19_06453 at 228.279 kb on - strand, within MPMX19_06453 at 228.279 kb on - strand, within MPMX19_06453 at 228.279 kb on - strand, within MPMX19_06453 at 228.279 kb on - strand, within MPMX19_06453 at 228.507 kb on - strand, within MPMX19_06453 at 228.596 kb on + strand at 228.597 kb on - strand at 228.597 kb on - strand at 228.617 kb on + strand at 228.617 kb on + strand at 228.617 kb on + strand at 228.618 kb on - strand at 228.618 kb on - strand at 228.618 kb on - strand at 228.618 kb on - strand at 228.618 kb on - strand at 228.618 kb on - strand at 228.630 kb on + strand at 228.630 kb on + strand at 228.630 kb on + strand at 228.630 kb on + strand at 228.631 kb on - strand at 228.631 kb on - strand at 228.652 kb on + strand at 228.653 kb on - strand at 228.653 kb on - strand at 228.667 kb on + strand at 228.684 kb on + strand at 228.684 kb on + strand at 228.684 kb on + strand at 228.684 kb on + strand at 228.685 kb on - strand at 228.685 kb on - strand at 228.685 kb on - strand at 228.685 kb on - strand at 228.685 kb on - strand at 228.781 kb on + strand, within MPMX19_06454 at 228.782 kb on - strand, within MPMX19_06454 at 228.782 kb on - strand, within MPMX19_06454 at 228.803 kb on + strand, within MPMX19_06454 at 228.803 kb on + strand, within MPMX19_06454 at 228.803 kb on + strand, within MPMX19_06454 at 228.803 kb on + strand, within MPMX19_06454 at 228.803 kb on + strand, within MPMX19_06454 at 228.803 kb on + strand, within MPMX19_06454 at 228.803 kb on + strand, within MPMX19_06454 at 228.803 kb on + strand, within MPMX19_06454 at 228.803 kb on + strand, within MPMX19_06454 at 228.803 kb on + strand, within MPMX19_06454 at 228.803 kb on + strand, within MPMX19_06454 at 228.803 kb on + strand, within MPMX19_06454 at 228.803 kb on + strand, within MPMX19_06454 at 228.804 kb on - strand, within MPMX19_06454 at 228.804 kb on - strand, within MPMX19_06454 at 228.804 kb on - strand, within MPMX19_06454 at 228.804 kb on - strand, within MPMX19_06454 at 228.804 kb on - strand, within MPMX19_06454 at 228.804 kb on - strand, within MPMX19_06454 at 228.948 kb on + strand, within MPMX19_06454 at 228.948 kb on + strand, within MPMX19_06454 at 228.948 kb on + strand, within MPMX19_06454 at 228.949 kb on - strand, within MPMX19_06454 at 228.999 kb on + strand, within MPMX19_06454 at 228.999 kb on + strand, within MPMX19_06454 at 228.999 kb on + strand, within MPMX19_06454 at 228.999 kb on + strand, within MPMX19_06454 at 229.000 kb on - strand, within MPMX19_06454 at 229.000 kb on - strand, within MPMX19_06454 at 229.000 kb on - strand, within MPMX19_06454 at 229.000 kb on - strand, within MPMX19_06454 at 229.000 kb on - strand, within MPMX19_06454 at 229.021 kb on + strand, within MPMX19_06454 at 229.057 kb on - strand, within MPMX19_06454 at 229.136 kb on + strand, within MPMX19_06454 at 229.137 kb on - strand, within MPMX19_06454 at 229.137 kb on - strand, within MPMX19_06454 at 229.137 kb on - strand, within MPMX19_06454 at 229.302 kb on + strand, within MPMX19_06454 at 229.302 kb on + strand, within MPMX19_06454 at 229.302 kb on + strand, within MPMX19_06454 at 229.303 kb on - strand, within MPMX19_06454 at 229.303 kb on - strand, within MPMX19_06454 at 229.303 kb on - strand, within MPMX19_06454 at 229.303 kb on - strand, within MPMX19_06454 at 229.303 kb on - strand, within MPMX19_06454 at 229.303 kb on - strand, within MPMX19_06454 at 229.303 kb on - strand, within MPMX19_06454 at 229.440 kb on + strand, within MPMX19_06454 at 229.441 kb on - strand, within MPMX19_06454 at 229.511 kb on + strand, within MPMX19_06454 at 229.511 kb on + strand, within MPMX19_06454 at 229.511 kb on + strand, within MPMX19_06454 at 229.511 kb on + strand, within MPMX19_06454 at 229.511 kb on + strand, within MPMX19_06454 at 229.511 kb on + strand, within MPMX19_06454 at 229.511 kb on + strand, within MPMX19_06454 at 229.511 kb on + strand, within MPMX19_06454 at 229.511 kb on + strand, within MPMX19_06454 at 229.511 kb on + strand, within MPMX19_06454 at 229.512 kb on - strand, within MPMX19_06454 at 229.512 kb on - strand, within MPMX19_06454 at 229.512 kb on - strand, within MPMX19_06454 at 229.512 kb on - strand, within MPMX19_06454 at 229.512 kb on - strand, within MPMX19_06454 at 229.603 kb on + strand, within MPMX19_06454 at 229.604 kb on - strand, within MPMX19_06454 at 229.604 kb on - strand, within MPMX19_06454
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 226,774 + MPMX19_06452 0.35 -0.7 226,774 + MPMX19_06452 0.35 -1.3 226,775 - MPMX19_06452 0.35 -2.6 226,775 - MPMX19_06452 0.35 +0.9 226,820 + MPMX19_06452 0.38 +1.3 226,820 + MPMX19_06452 0.38 +1.4 226,821 - MPMX19_06452 0.38 +0.3 226,821 - MPMX19_06452 0.38 -0.1 226,821 - MPMX19_06452 0.38 -0.9 226,821 - MPMX19_06452 0.38 +0.2 226,821 - MPMX19_06452 0.38 +0.5 226,821 - MPMX19_06452 0.38 -1.7 227,000 + MPMX19_06452 0.50 -0.1 227,000 + MPMX19_06452 0.50 -1.7 227,000 + MPMX19_06452 0.50 -0.4 227,001 - MPMX19_06452 0.50 -0.1 227,001 - MPMX19_06452 0.50 -0.6 227,142 + MPMX19_06452 0.60 -0.3 227,142 + MPMX19_06452 0.60 -0.4 227,143 - MPMX19_06452 0.60 +0.5 227,269 + MPMX19_06452 0.68 -1.5 227,403 + MPMX19_06452 0.77 +0.5 227,403 + MPMX19_06452 0.77 -0.4 227,404 - MPMX19_06452 0.77 -0.4 227,404 - MPMX19_06452 0.77 -0.5 227,404 - MPMX19_06452 0.77 -0.5 227,404 - MPMX19_06452 0.77 -1.3 227,404 - MPMX19_06452 0.77 -0.4 227,404 - MPMX19_06452 0.77 +1.4 227,404 - MPMX19_06452 0.77 +0.5 227,613 + -1.1 227,613 + +0.1 227,613 + +0.1 227,613 + -1.1 227,613 + -1.5 227,613 + -1.5 227,613 + -0.6 227,613 + -0.1 227,613 + -0.7 227,613 + +0.7 227,613 + -1.2 227,614 - -0.6 227,614 - -0.6 227,614 - +0.2 227,614 - -1.2 227,614 - +0.7 227,614 - -0.6 227,614 - -2.0 227,614 - -1.5 227,614 - -2.4 227,614 - -0.2 227,614 - -0.5 227,614 - -0.1 227,614 - -1.3 227,634 + -2.5 227,634 + -0.3 227,635 - +1.2 227,635 - +0.4 227,635 - -0.9 227,635 - -2.8 227,707 + +1.2 227,707 + +0.4 227,707 + -1.4 227,707 + -0.5 227,708 - -0.4 227,708 - -0.0 227,708 - +1.5 227,708 - -1.3 227,708 - +1.1 227,708 - +1.5 227,708 - -0.3 227,728 + -0.6 227,728 + -0.6 227,728 + -2.5 227,728 + -1.1 227,729 - +1.4 227,729 - -0.9 227,729 - -1.4 227,729 - -0.2 227,729 - -1.1 227,762 + -0.4 227,762 + -1.0 227,762 + +0.2 227,762 + -0.3 227,762 + +0.3 227,762 + +0.1 227,762 + +0.4 227,762 + -1.6 227,762 + -0.3 227,762 + -0.5 227,763 - -0.5 227,763 - -0.2 227,763 - +0.5 227,763 - +0.1 227,763 - -3.3 227,763 - -0.7 228,009 + MPMX19_06453 0.31 +0.1 228,009 + MPMX19_06453 0.31 +0.0 228,010 - MPMX19_06453 0.31 -0.3 228,278 + MPMX19_06453 0.62 +0.1 228,278 + MPMX19_06453 0.62 -1.0 228,278 + MPMX19_06453 0.62 -0.9 228,278 + MPMX19_06453 0.62 +0.2 228,278 + MPMX19_06453 0.62 +0.4 228,278 + MPMX19_06453 0.62 +0.1 228,278 + MPMX19_06453 0.62 +1.3 228,278 + MPMX19_06453 0.62 -1.5 228,279 - MPMX19_06453 0.62 -0.6 228,279 - MPMX19_06453 0.62 +0.1 228,279 - MPMX19_06453 0.62 -1.1 228,279 - MPMX19_06453 0.62 +1.1 228,279 - MPMX19_06453 0.62 +0.8 228,279 - MPMX19_06453 0.62 +0.4 228,279 - MPMX19_06453 0.62 +0.4 228,279 - MPMX19_06453 0.62 +0.7 228,507 - MPMX19_06453 0.88 -1.9 228,596 + -0.6 228,597 - -0.7 228,597 - -2.3 228,617 + +1.4 228,617 + -0.3 228,617 + -0.6 228,618 - -3.0 228,618 - -2.1 228,618 - -1.5 228,618 - +0.7 228,618 - +0.5 228,618 - +0.8 228,630 + +0.3 228,630 + -0.6 228,630 + +0.1 228,630 + -0.1 228,631 - -0.0 228,631 - +0.5 228,652 + -1.9 228,653 - -1.8 228,653 - -1.1 228,667 + -0.6 228,684 + -0.2 228,684 + +0.1 228,684 + +0.7 228,684 + -0.5 228,685 - -2.3 228,685 - +0.4 228,685 - -1.0 228,685 - -0.4 228,685 - -1.1 228,781 + MPMX19_06454 0.10 -0.3 228,782 - MPMX19_06454 0.10 -0.3 228,782 - MPMX19_06454 0.10 -0.4 228,803 + MPMX19_06454 0.12 +0.2 228,803 + MPMX19_06454 0.12 +0.5 228,803 + MPMX19_06454 0.12 +2.4 228,803 + MPMX19_06454 0.12 -1.1 228,803 + MPMX19_06454 0.12 -0.5 228,803 + MPMX19_06454 0.12 -0.8 228,803 + MPMX19_06454 0.12 -1.1 228,803 + MPMX19_06454 0.12 -0.1 228,803 + MPMX19_06454 0.12 -0.7 228,803 + MPMX19_06454 0.12 -0.3 228,803 + MPMX19_06454 0.12 +0.2 228,803 + MPMX19_06454 0.12 -0.9 228,803 + MPMX19_06454 0.12 -0.9 228,804 - MPMX19_06454 0.12 -2.0 228,804 - MPMX19_06454 0.12 +0.1 228,804 - MPMX19_06454 0.12 +0.2 228,804 - MPMX19_06454 0.12 -0.5 228,804 - MPMX19_06454 0.12 -0.9 228,804 - MPMX19_06454 0.12 -0.2 228,948 + MPMX19_06454 0.20 -0.4 228,948 + MPMX19_06454 0.20 +0.9 228,948 + MPMX19_06454 0.20 -1.2 228,949 - MPMX19_06454 0.20 -0.3 228,999 + MPMX19_06454 0.23 -1.0 228,999 + MPMX19_06454 0.23 -0.4 228,999 + MPMX19_06454 0.23 -0.5 228,999 + MPMX19_06454 0.23 -0.2 229,000 - MPMX19_06454 0.23 -0.5 229,000 - MPMX19_06454 0.23 -1.5 229,000 - MPMX19_06454 0.23 -0.6 229,000 - MPMX19_06454 0.23 -0.2 229,000 - MPMX19_06454 0.23 -0.1 229,021 + MPMX19_06454 0.25 +0.1 229,057 - MPMX19_06454 0.27 -1.2 229,136 + MPMX19_06454 0.31 -2.5 229,137 - MPMX19_06454 0.32 -1.1 229,137 - MPMX19_06454 0.32 -1.2 229,137 - MPMX19_06454 0.32 +0.0 229,302 + MPMX19_06454 0.41 -0.6 229,302 + MPMX19_06454 0.41 -0.3 229,302 + MPMX19_06454 0.41 -0.4 229,303 - MPMX19_06454 0.41 -0.0 229,303 - MPMX19_06454 0.41 -0.3 229,303 - MPMX19_06454 0.41 -1.3 229,303 - MPMX19_06454 0.41 +0.3 229,303 - MPMX19_06454 0.41 +0.4 229,303 - MPMX19_06454 0.41 -0.8 229,303 - MPMX19_06454 0.41 -0.0 229,440 + MPMX19_06454 0.50 -2.8 229,441 - MPMX19_06454 0.50 -1.3 229,511 + MPMX19_06454 0.54 -0.3 229,511 + MPMX19_06454 0.54 -1.0 229,511 + MPMX19_06454 0.54 -1.1 229,511 + MPMX19_06454 0.54 -0.7 229,511 + MPMX19_06454 0.54 +0.6 229,511 + MPMX19_06454 0.54 +1.0 229,511 + MPMX19_06454 0.54 -0.9 229,511 + MPMX19_06454 0.54 +0.1 229,511 + MPMX19_06454 0.54 +0.5 229,511 + MPMX19_06454 0.54 -2.1 229,512 - MPMX19_06454 0.54 +1.8 229,512 - MPMX19_06454 0.54 -0.3 229,512 - MPMX19_06454 0.54 +0.7 229,512 - MPMX19_06454 0.54 -1.5 229,512 - MPMX19_06454 0.54 -0.7 229,603 + MPMX19_06454 0.59 -0.4 229,604 - MPMX19_06454 0.59 +1.7 229,604 - MPMX19_06454 0.59 +1.3
Or see this region's nucleotide sequence