Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06419 and MPMX19_06420 are separated by 99 nucleotides MPMX19_06420 and MPMX19_06421 are separated by 224 nucleotides
MPMX19_06419: MPMX19_06419 - IS110 family transposase ISHne3, at 189,900 to 190,586
_06419
MPMX19_06420: MPMX19_06420 - hypothetical protein, at 190,686 to 191,078
_06420
MPMX19_06421: MPMX19_06421 - hypothetical protein, at 191,303 to 192,928
_06421
Position (kb) 190
191
192 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 189.725 kb on + strand at 189.725 kb on + strand at 189.725 kb on + strand at 189.725 kb on + strand at 189.725 kb on + strand at 189.726 kb on - strand at 189.726 kb on - strand at 189.726 kb on - strand at 189.901 kb on + strand at 189.901 kb on + strand at 189.901 kb on + strand at 189.901 kb on + strand at 189.901 kb on + strand at 189.901 kb on + strand at 189.901 kb on + strand at 189.902 kb on - strand at 189.902 kb on - strand at 189.902 kb on - strand at 189.902 kb on - strand at 190.048 kb on + strand, within MPMX19_06419 at 190.048 kb on + strand, within MPMX19_06419 at 190.048 kb on + strand, within MPMX19_06419 at 190.048 kb on + strand, within MPMX19_06419 at 190.049 kb on - strand, within MPMX19_06419 at 190.049 kb on - strand, within MPMX19_06419 at 190.118 kb on - strand, within MPMX19_06419 at 190.561 kb on + strand at 190.561 kb on + strand at 190.561 kb on + strand at 190.561 kb on + strand at 190.562 kb on - strand at 190.562 kb on - strand at 190.562 kb on - strand at 190.562 kb on - strand at 190.562 kb on - strand at 190.562 kb on - strand at 190.562 kb on - strand at 190.562 kb on - strand at 190.562 kb on - strand at 190.566 kb on + strand at 190.567 kb on - strand at 190.567 kb on - strand at 190.567 kb on - strand at 190.590 kb on + strand at 190.590 kb on + strand at 190.591 kb on - strand at 190.612 kb on + strand at 190.613 kb on - strand at 190.627 kb on + strand at 190.628 kb on - strand at 190.628 kb on - strand at 190.852 kb on - strand, within MPMX19_06420 at 190.852 kb on - strand, within MPMX19_06420 at 190.852 kb on - strand, within MPMX19_06420 at 190.872 kb on + strand, within MPMX19_06420 at 190.872 kb on + strand, within MPMX19_06420 at 190.872 kb on + strand, within MPMX19_06420 at 190.872 kb on + strand, within MPMX19_06420 at 190.873 kb on - strand, within MPMX19_06420 at 190.873 kb on - strand, within MPMX19_06420 at 190.873 kb on - strand, within MPMX19_06420 at 191.184 kb on + strand at 191.184 kb on + strand at 191.185 kb on - strand at 191.185 kb on - strand at 191.201 kb on + strand at 191.202 kb on - strand at 191.270 kb on - strand at 191.270 kb on - strand at 191.300 kb on + strand at 191.301 kb on - strand at 191.304 kb on + strand at 191.304 kb on + strand at 191.304 kb on + strand at 191.304 kb on + strand at 191.304 kb on + strand at 191.304 kb on + strand at 191.305 kb on - strand at 191.305 kb on - strand at 191.305 kb on - strand at 191.305 kb on - strand at 191.305 kb on - strand at 191.305 kb on - strand at 191.305 kb on - strand at 191.305 kb on - strand at 191.305 kb on - strand at 191.305 kb on - strand at 191.306 kb on + strand at 191.331 kb on + strand at 191.332 kb on - strand at 191.332 kb on - strand at 191.391 kb on + strand at 191.628 kb on + strand, within MPMX19_06421 at 191.628 kb on + strand, within MPMX19_06421 at 191.628 kb on + strand, within MPMX19_06421 at 191.628 kb on + strand, within MPMX19_06421 at 191.628 kb on + strand, within MPMX19_06421 at 191.629 kb on - strand, within MPMX19_06421 at 191.658 kb on + strand, within MPMX19_06421 at 191.658 kb on + strand, within MPMX19_06421 at 191.658 kb on + strand, within MPMX19_06421 at 191.658 kb on + strand, within MPMX19_06421 at 191.659 kb on - strand, within MPMX19_06421 at 191.659 kb on - strand, within MPMX19_06421 at 191.659 kb on - strand, within MPMX19_06421 at 191.707 kb on + strand, within MPMX19_06421 at 191.707 kb on + strand, within MPMX19_06421 at 191.707 kb on + strand, within MPMX19_06421 at 191.707 kb on + strand, within MPMX19_06421 at 191.707 kb on + strand, within MPMX19_06421 at 191.707 kb on + strand, within MPMX19_06421 at 191.707 kb on + strand, within MPMX19_06421 at 191.707 kb on + strand, within MPMX19_06421 at 191.707 kb on + strand, within MPMX19_06421 at 191.707 kb on + strand, within MPMX19_06421 at 191.708 kb on - strand, within MPMX19_06421 at 191.708 kb on - strand, within MPMX19_06421 at 191.708 kb on - strand, within MPMX19_06421 at 191.708 kb on - strand, within MPMX19_06421 at 191.708 kb on - strand, within MPMX19_06421 at 191.708 kb on - strand, within MPMX19_06421 at 191.708 kb on - strand, within MPMX19_06421 at 191.708 kb on - strand, within MPMX19_06421 at 191.711 kb on + strand, within MPMX19_06421 at 191.711 kb on + strand, within MPMX19_06421 at 191.711 kb on + strand, within MPMX19_06421 at 191.711 kb on + strand, within MPMX19_06421 at 191.711 kb on + strand, within MPMX19_06421 at 191.711 kb on + strand, within MPMX19_06421 at 191.711 kb on + strand, within MPMX19_06421 at 191.711 kb on + strand, within MPMX19_06421 at 191.711 kb on + strand, within MPMX19_06421 at 191.711 kb on + strand, within MPMX19_06421 at 191.711 kb on + strand, within MPMX19_06421 at 191.711 kb on + strand, within MPMX19_06421 at 191.711 kb on + strand, within MPMX19_06421 at 191.711 kb on + strand, within MPMX19_06421 at 191.711 kb on + strand, within MPMX19_06421 at 191.711 kb on + strand, within MPMX19_06421 at 191.711 kb on + strand, within MPMX19_06421 at 191.712 kb on - strand, within MPMX19_06421 at 191.712 kb on - strand, within MPMX19_06421 at 191.712 kb on - strand, within MPMX19_06421 at 191.712 kb on - strand, within MPMX19_06421 at 191.712 kb on - strand, within MPMX19_06421 at 191.712 kb on - strand, within MPMX19_06421 at 191.712 kb on - strand, within MPMX19_06421 at 191.712 kb on - strand, within MPMX19_06421 at 191.712 kb on - strand, within MPMX19_06421 at 191.856 kb on + strand, within MPMX19_06421 at 191.891 kb on - strand, within MPMX19_06421 at 191.919 kb on + strand, within MPMX19_06421 at 191.919 kb on + strand, within MPMX19_06421 at 191.920 kb on - strand, within MPMX19_06421 at 191.920 kb on - strand, within MPMX19_06421 at 191.920 kb on - strand, within MPMX19_06421 at 191.920 kb on - strand, within MPMX19_06421 at 191.920 kb on - strand, within MPMX19_06421 at 191.920 kb on - strand, within MPMX19_06421 at 191.920 kb on - strand, within MPMX19_06421 at 191.920 kb on - strand, within MPMX19_06421 at 191.920 kb on - strand, within MPMX19_06421 at 191.922 kb on + strand, within MPMX19_06421 at 191.922 kb on + strand, within MPMX19_06421 at 191.922 kb on + strand, within MPMX19_06421 at 191.922 kb on + strand, within MPMX19_06421 at 191.923 kb on - strand, within MPMX19_06421 at 191.923 kb on - strand, within MPMX19_06421 at 191.923 kb on - strand, within MPMX19_06421 at 191.923 kb on - strand, within MPMX19_06421 at 191.923 kb on - strand, within MPMX19_06421 at 191.923 kb on - strand, within MPMX19_06421 at 191.923 kb on - strand, within MPMX19_06421 at 191.923 kb on - strand, within MPMX19_06421 at 191.923 kb on - strand, within MPMX19_06421 at 191.923 kb on - strand, within MPMX19_06421 at 191.928 kb on + strand, within MPMX19_06421 at 191.929 kb on - strand, within MPMX19_06421 at 191.982 kb on - strand, within MPMX19_06421 at 191.982 kb on - strand, within MPMX19_06421 at 192.000 kb on + strand, within MPMX19_06421 at 192.000 kb on + strand, within MPMX19_06421 at 192.000 kb on + strand, within MPMX19_06421 at 192.016 kb on + strand, within MPMX19_06421 at 192.016 kb on + strand, within MPMX19_06421
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 189,725 + -2.2 189,725 + +0.1 189,725 + +0.3 189,725 + +0.1 189,725 + -0.1 189,726 - +1.0 189,726 - -0.7 189,726 - +0.3 189,901 + +0.5 189,901 + +0.7 189,901 + -0.8 189,901 + -0.5 189,901 + -2.0 189,901 + -1.5 189,901 + +0.8 189,902 - -0.5 189,902 - -0.1 189,902 - +0.2 189,902 - +0.5 190,048 + MPMX19_06419 0.22 -0.3 190,048 + MPMX19_06419 0.22 -1.2 190,048 + MPMX19_06419 0.22 -1.1 190,048 + MPMX19_06419 0.22 +0.7 190,049 - MPMX19_06419 0.22 -1.0 190,049 - MPMX19_06419 0.22 +0.4 190,118 - MPMX19_06419 0.32 -1.8 190,561 + -0.1 190,561 + -1.5 190,561 + -1.4 190,561 + +0.4 190,562 - +0.5 190,562 - -1.1 190,562 - +0.0 190,562 - +0.4 190,562 - +0.3 190,562 - -0.7 190,562 - -0.2 190,562 - +0.7 190,562 - -1.7 190,566 + -1.5 190,567 - -1.1 190,567 - -0.8 190,567 - -0.3 190,590 + -1.1 190,590 + -2.2 190,591 - +0.0 190,612 + +0.4 190,613 - +0.8 190,627 + -1.0 190,628 - +0.3 190,628 - +0.8 190,852 - MPMX19_06420 0.42 +0.3 190,852 - MPMX19_06420 0.42 -0.1 190,852 - MPMX19_06420 0.42 +0.7 190,872 + MPMX19_06420 0.47 +0.1 190,872 + MPMX19_06420 0.47 +0.2 190,872 + MPMX19_06420 0.47 -1.3 190,872 + MPMX19_06420 0.47 -0.1 190,873 - MPMX19_06420 0.48 +0.9 190,873 - MPMX19_06420 0.48 +0.9 190,873 - MPMX19_06420 0.48 -1.8 191,184 + -1.9 191,184 + -0.2 191,185 - -0.3 191,185 - -0.6 191,201 + -0.9 191,202 - -1.0 191,270 - -0.9 191,270 - -1.1 191,300 + -0.3 191,301 - +0.7 191,304 + -0.5 191,304 + -0.9 191,304 + -2.0 191,304 + +0.9 191,304 + -0.6 191,304 + +0.1 191,305 - -0.2 191,305 - +1.3 191,305 - +0.1 191,305 - +0.5 191,305 - +0.5 191,305 - -1.3 191,305 - -0.5 191,305 - -0.6 191,305 - -2.6 191,305 - -1.3 191,306 + -0.8 191,331 + +0.4 191,332 - -0.3 191,332 - +1.3 191,391 + -0.9 191,628 + MPMX19_06421 0.20 -0.8 191,628 + MPMX19_06421 0.20 -0.7 191,628 + MPMX19_06421 0.20 -0.6 191,628 + MPMX19_06421 0.20 +1.7 191,628 + MPMX19_06421 0.20 -0.8 191,629 - MPMX19_06421 0.20 +0.2 191,658 + MPMX19_06421 0.22 -0.7 191,658 + MPMX19_06421 0.22 -0.0 191,658 + MPMX19_06421 0.22 +0.9 191,658 + MPMX19_06421 0.22 -2.7 191,659 - MPMX19_06421 0.22 -1.1 191,659 - MPMX19_06421 0.22 +0.5 191,659 - MPMX19_06421 0.22 -0.3 191,707 + MPMX19_06421 0.25 -1.6 191,707 + MPMX19_06421 0.25 -1.0 191,707 + MPMX19_06421 0.25 -0.9 191,707 + MPMX19_06421 0.25 -0.0 191,707 + MPMX19_06421 0.25 -2.3 191,707 + MPMX19_06421 0.25 -2.2 191,707 + MPMX19_06421 0.25 +1.1 191,707 + MPMX19_06421 0.25 +1.7 191,707 + MPMX19_06421 0.25 -0.6 191,707 + MPMX19_06421 0.25 -1.3 191,708 - MPMX19_06421 0.25 -1.9 191,708 - MPMX19_06421 0.25 -1.8 191,708 - MPMX19_06421 0.25 -1.3 191,708 - MPMX19_06421 0.25 -0.6 191,708 - MPMX19_06421 0.25 -1.3 191,708 - MPMX19_06421 0.25 +0.2 191,708 - MPMX19_06421 0.25 -0.3 191,708 - MPMX19_06421 0.25 -1.3 191,711 + MPMX19_06421 0.25 -1.1 191,711 + MPMX19_06421 0.25 -1.3 191,711 + MPMX19_06421 0.25 -0.8 191,711 + MPMX19_06421 0.25 -2.2 191,711 + MPMX19_06421 0.25 -1.6 191,711 + MPMX19_06421 0.25 -0.5 191,711 + MPMX19_06421 0.25 -1.1 191,711 + MPMX19_06421 0.25 -0.9 191,711 + MPMX19_06421 0.25 +2.5 191,711 + MPMX19_06421 0.25 -1.6 191,711 + MPMX19_06421 0.25 -1.0 191,711 + MPMX19_06421 0.25 -0.1 191,711 + MPMX19_06421 0.25 +0.3 191,711 + MPMX19_06421 0.25 -1.3 191,711 + MPMX19_06421 0.25 +0.4 191,711 + MPMX19_06421 0.25 -0.2 191,711 + MPMX19_06421 0.25 +0.4 191,712 - MPMX19_06421 0.25 +0.5 191,712 - MPMX19_06421 0.25 -1.9 191,712 - MPMX19_06421 0.25 +0.5 191,712 - MPMX19_06421 0.25 +0.4 191,712 - MPMX19_06421 0.25 -0.3 191,712 - MPMX19_06421 0.25 -0.6 191,712 - MPMX19_06421 0.25 -1.6 191,712 - MPMX19_06421 0.25 +0.1 191,712 - MPMX19_06421 0.25 +0.8 191,856 + MPMX19_06421 0.34 +0.5 191,891 - MPMX19_06421 0.36 -1.1 191,919 + MPMX19_06421 0.38 -1.8 191,919 + MPMX19_06421 0.38 -1.1 191,920 - MPMX19_06421 0.38 +0.4 191,920 - MPMX19_06421 0.38 -0.5 191,920 - MPMX19_06421 0.38 -2.9 191,920 - MPMX19_06421 0.38 -0.3 191,920 - MPMX19_06421 0.38 -0.9 191,920 - MPMX19_06421 0.38 -1.1 191,920 - MPMX19_06421 0.38 -1.1 191,920 - MPMX19_06421 0.38 +0.1 191,920 - MPMX19_06421 0.38 -0.1 191,922 + MPMX19_06421 0.38 -1.8 191,922 + MPMX19_06421 0.38 +0.5 191,922 + MPMX19_06421 0.38 -2.1 191,922 + MPMX19_06421 0.38 -0.6 191,923 - MPMX19_06421 0.38 -0.6 191,923 - MPMX19_06421 0.38 -1.4 191,923 - MPMX19_06421 0.38 -0.4 191,923 - MPMX19_06421 0.38 +0.1 191,923 - MPMX19_06421 0.38 +0.9 191,923 - MPMX19_06421 0.38 -1.3 191,923 - MPMX19_06421 0.38 -0.1 191,923 - MPMX19_06421 0.38 -1.0 191,923 - MPMX19_06421 0.38 -0.9 191,923 - MPMX19_06421 0.38 -0.6 191,928 + MPMX19_06421 0.38 -1.1 191,929 - MPMX19_06421 0.38 -1.3 191,982 - MPMX19_06421 0.42 +0.8 191,982 - MPMX19_06421 0.42 +0.2 192,000 + MPMX19_06421 0.43 -0.5 192,000 + MPMX19_06421 0.43 -1.8 192,000 + MPMX19_06421 0.43 -0.7 192,016 + MPMX19_06421 0.44 +0.5 192,016 + MPMX19_06421 0.44 -0.6
Or see this region's nucleotide sequence