Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06207 and MPMX19_06208 are separated by 114 nucleotides MPMX19_06208 and MPMX19_06209 are separated by 32 nucleotides MPMX19_06209 and MPMX19_06210 are separated by 4 nucleotides MPMX19_06210 and MPMX19_06211 are separated by 73 nucleotides MPMX19_06211 and MPMX19_06212 are separated by 38 nucleotides MPMX19_06212 and MPMX19_06213 are separated by 75 nucleotides
MPMX19_06207: MPMX19_06207 - hypothetical protein, at 393,857 to 394,300
_06207
MPMX19_06208: MPMX19_06208 - tRNA-Val, at 394,415 to 394,489
_06208
MPMX19_06209: MPMX19_06209 - tRNA-Gly, at 394,522 to 394,596
_06209
MPMX19_06210: MPMX19_06210 - tRNA-Asp, at 394,601 to 394,677
_06210
MPMX19_06211: MPMX19_06211 - tRNA-Ala, at 394,751 to 394,826
_06211
MPMX19_06212: MPMX19_06212 - tRNA-Leu, at 394,865 to 394,951
_06212
MPMX19_06213: MPMX19_06213 - Cardiolipin synthase B, at 395,027 to 396,661
_06213
Position (kb) 394
395 Strain fitness (log2 ratio) -2
-1
0
1
2 at 393.751 kb on - strand at 393.751 kb on - strand at 393.751 kb on - strand at 393.751 kb on - strand at 393.751 kb on - strand at 393.751 kb on - strand at 393.751 kb on - strand at 393.788 kb on + strand at 393.788 kb on + strand at 393.788 kb on + strand at 393.788 kb on + strand at 393.789 kb on - strand at 393.789 kb on - strand at 393.809 kb on - strand at 393.822 kb on + strand at 393.822 kb on + strand at 393.822 kb on + strand at 393.822 kb on + strand at 393.822 kb on + strand at 393.822 kb on + strand at 393.823 kb on - strand at 393.823 kb on - strand at 393.823 kb on - strand at 393.823 kb on - strand at 393.823 kb on - strand at 394.034 kb on + strand, within MPMX19_06207 at 394.034 kb on + strand, within MPMX19_06207 at 394.034 kb on + strand, within MPMX19_06207 at 394.047 kb on - strand, within MPMX19_06207 at 394.047 kb on - strand, within MPMX19_06207 at 394.160 kb on + strand, within MPMX19_06207 at 394.160 kb on + strand, within MPMX19_06207 at 394.160 kb on + strand, within MPMX19_06207 at 394.161 kb on - strand, within MPMX19_06207 at 394.501 kb on - strand at 394.501 kb on - strand at 394.503 kb on - strand at 394.696 kb on - strand at 394.696 kb on - strand at 394.698 kb on - strand at 394.698 kb on - strand at 394.698 kb on - strand at 394.786 kb on - strand, within MPMX19_06211 at 394.786 kb on - strand, within MPMX19_06211 at 394.786 kb on - strand, within MPMX19_06211 at 394.799 kb on - strand, within MPMX19_06211 at 394.799 kb on - strand, within MPMX19_06211 at 394.799 kb on - strand, within MPMX19_06211 at 394.799 kb on - strand, within MPMX19_06211 at 394.989 kb on + strand at 394.989 kb on + strand at 394.989 kb on + strand at 394.990 kb on - strand at 394.990 kb on - strand at 394.993 kb on + strand at 394.993 kb on + strand at 394.993 kb on + strand at 395.550 kb on + strand, within MPMX19_06213 at 395.550 kb on + strand, within MPMX19_06213 at 395.550 kb on + strand, within MPMX19_06213 at 395.550 kb on + strand, within MPMX19_06213 at 395.550 kb on + strand, within MPMX19_06213 at 395.550 kb on + strand, within MPMX19_06213 at 395.550 kb on + strand, within MPMX19_06213 at 395.550 kb on + strand, within MPMX19_06213 at 395.550 kb on + strand, within MPMX19_06213 at 395.550 kb on + strand, within MPMX19_06213 at 395.550 kb on + strand, within MPMX19_06213 at 395.550 kb on + strand, within MPMX19_06213 at 395.550 kb on + strand, within MPMX19_06213 at 395.550 kb on + strand, within MPMX19_06213 at 395.550 kb on + strand, within MPMX19_06213 at 395.550 kb on + strand, within MPMX19_06213 at 395.550 kb on + strand, within MPMX19_06213 at 395.550 kb on + strand, within MPMX19_06213 at 395.550 kb on + strand, within MPMX19_06213 at 395.550 kb on + strand, within MPMX19_06213 at 395.550 kb on + strand, within MPMX19_06213 at 395.550 kb on + strand, within MPMX19_06213 at 395.550 kb on + strand, within MPMX19_06213 at 395.550 kb on + strand, within MPMX19_06213 at 395.550 kb on + strand, within MPMX19_06213 at 395.550 kb on + strand, within MPMX19_06213 at 395.550 kb on + strand, within MPMX19_06213 at 395.550 kb on + strand, within MPMX19_06213 at 395.550 kb on + strand, within MPMX19_06213 at 395.550 kb on + strand, within MPMX19_06213 at 395.550 kb on + strand, within MPMX19_06213 at 395.550 kb on + strand, within MPMX19_06213 at 395.550 kb on + strand, within MPMX19_06213 at 395.550 kb on + strand, within MPMX19_06213 at 395.550 kb on + strand, within MPMX19_06213 at 395.550 kb on + strand, within MPMX19_06213 at 395.550 kb on + strand, within MPMX19_06213 at 395.550 kb on + strand, within MPMX19_06213 at 395.550 kb on + strand, within MPMX19_06213 at 395.550 kb on + strand, within MPMX19_06213 at 395.550 kb on + strand, within MPMX19_06213 at 395.550 kb on + strand, within MPMX19_06213 at 395.550 kb on + strand, within MPMX19_06213 at 395.550 kb on + strand, within MPMX19_06213 at 395.550 kb on + strand, within MPMX19_06213 at 395.550 kb on + strand, within MPMX19_06213 at 395.550 kb on + strand, within MPMX19_06213 at 395.550 kb on + strand, within MPMX19_06213 at 395.550 kb on + strand, within MPMX19_06213 at 395.550 kb on + strand, within MPMX19_06213 at 395.550 kb on + strand, within MPMX19_06213 at 395.550 kb on + strand, within MPMX19_06213 at 395.550 kb on + strand, within MPMX19_06213 at 395.550 kb on + strand, within MPMX19_06213 at 395.550 kb on + strand, within MPMX19_06213 at 395.551 kb on - strand, within MPMX19_06213 at 395.551 kb on - strand, within MPMX19_06213 at 395.551 kb on - strand, within MPMX19_06213 at 395.551 kb on - strand, within MPMX19_06213 at 395.551 kb on - strand, within MPMX19_06213 at 395.551 kb on - strand, within MPMX19_06213 at 395.551 kb on - strand, within MPMX19_06213 at 395.551 kb on - strand, within MPMX19_06213 at 395.551 kb on - strand, within MPMX19_06213 at 395.551 kb on - strand, within MPMX19_06213 at 395.551 kb on - strand, within MPMX19_06213 at 395.551 kb on - strand, within MPMX19_06213 at 395.551 kb on - strand, within MPMX19_06213 at 395.551 kb on - strand, within MPMX19_06213 at 395.551 kb on - strand, within MPMX19_06213 at 395.551 kb on - strand, within MPMX19_06213 at 395.551 kb on - strand, within MPMX19_06213 at 395.551 kb on - strand, within MPMX19_06213 at 395.551 kb on - strand, within MPMX19_06213 at 395.551 kb on - strand, within MPMX19_06213 at 395.551 kb on - strand, within MPMX19_06213 at 395.551 kb on - strand, within MPMX19_06213 at 395.551 kb on - strand, within MPMX19_06213 at 395.551 kb on - strand, within MPMX19_06213 at 395.551 kb on - strand, within MPMX19_06213 at 395.551 kb on - strand, within MPMX19_06213 at 395.551 kb on - strand, within MPMX19_06213 at 395.551 kb on - strand, within MPMX19_06213 at 395.551 kb on - strand, within MPMX19_06213 at 395.551 kb on - strand, within MPMX19_06213 at 395.551 kb on - strand, within MPMX19_06213 at 395.551 kb on - strand, within MPMX19_06213 at 395.551 kb on - strand, within MPMX19_06213 at 395.551 kb on - strand, within MPMX19_06213 at 395.551 kb on - strand, within MPMX19_06213 at 395.551 kb on - strand, within MPMX19_06213 at 395.551 kb on - strand, within MPMX19_06213 at 395.551 kb on - strand, within MPMX19_06213 at 395.551 kb on - strand, within MPMX19_06213 at 395.551 kb on - strand, within MPMX19_06213 at 395.551 kb on - strand, within MPMX19_06213 at 395.551 kb on - strand, within MPMX19_06213 at 395.551 kb on - strand, within MPMX19_06213 at 395.551 kb on - strand, within MPMX19_06213 at 395.551 kb on - strand, within MPMX19_06213 at 395.551 kb on - strand, within MPMX19_06213 at 395.551 kb on - strand, within MPMX19_06213 at 395.551 kb on - strand, within MPMX19_06213 at 395.551 kb on - strand, within MPMX19_06213 at 395.551 kb on - strand, within MPMX19_06213 at 395.551 kb on - strand, within MPMX19_06213 at 395.551 kb on - strand, within MPMX19_06213 at 395.551 kb on - strand, within MPMX19_06213 at 395.551 kb on - strand, within MPMX19_06213 at 395.551 kb on - strand, within MPMX19_06213 at 395.551 kb on - strand, within MPMX19_06213 at 395.551 kb on - strand, within MPMX19_06213 at 395.551 kb on - strand, within MPMX19_06213 at 395.551 kb on - strand, within MPMX19_06213 at 395.551 kb on - strand, within MPMX19_06213 at 395.551 kb on - strand, within MPMX19_06213 at 395.551 kb on - strand, within MPMX19_06213 at 395.551 kb on - strand, within MPMX19_06213 at 395.551 kb on - strand, within MPMX19_06213 at 395.551 kb on - strand, within MPMX19_06213 at 395.551 kb on - strand, within MPMX19_06213 at 395.769 kb on + strand, within MPMX19_06213 at 395.769 kb on + strand, within MPMX19_06213 at 395.769 kb on + strand, within MPMX19_06213 at 395.769 kb on + strand, within MPMX19_06213 at 395.770 kb on - strand, within MPMX19_06213 at 395.770 kb on - strand, within MPMX19_06213 at 395.784 kb on + strand, within MPMX19_06213 at 395.784 kb on + strand, within MPMX19_06213 at 395.784 kb on + strand, within MPMX19_06213 at 395.784 kb on + strand, within MPMX19_06213 at 395.784 kb on + strand, within MPMX19_06213 at 395.785 kb on - strand, within MPMX19_06213 at 395.785 kb on - strand, within MPMX19_06213 at 395.785 kb on - strand, within MPMX19_06213 at 395.820 kb on + strand, within MPMX19_06213 at 395.820 kb on + strand, within MPMX19_06213 at 395.820 kb on + strand, within MPMX19_06213 at 395.820 kb on + strand, within MPMX19_06213 at 395.820 kb on + strand, within MPMX19_06213 at 395.820 kb on + strand, within MPMX19_06213 at 395.820 kb on + strand, within MPMX19_06213 at 395.820 kb on + strand, within MPMX19_06213 at 395.821 kb on - strand, within MPMX19_06213 at 395.821 kb on - strand, within MPMX19_06213 at 395.821 kb on - strand, within MPMX19_06213
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 393,751 - +0.7 393,751 - -1.4 393,751 - -0.4 393,751 - -1.1 393,751 - -1.0 393,751 - -0.7 393,751 - -1.0 393,788 + -0.2 393,788 + -1.1 393,788 + +0.2 393,788 + +0.5 393,789 - -1.0 393,789 - -1.2 393,809 - -0.8 393,822 + -0.2 393,822 + -1.3 393,822 + -1.7 393,822 + -0.4 393,822 + -0.8 393,822 + -0.2 393,823 - -0.6 393,823 - -2.6 393,823 - -0.4 393,823 - -0.4 393,823 - -0.4 394,034 + MPMX19_06207 0.40 +0.5 394,034 + MPMX19_06207 0.40 +0.9 394,034 + MPMX19_06207 0.40 -1.7 394,047 - MPMX19_06207 0.43 -1.0 394,047 - MPMX19_06207 0.43 +2.2 394,160 + MPMX19_06207 0.68 +0.5 394,160 + MPMX19_06207 0.68 +0.0 394,160 + MPMX19_06207 0.68 +0.0 394,161 - MPMX19_06207 0.68 -1.0 394,501 - +0.0 394,501 - -0.7 394,503 - +0.2 394,696 - -1.3 394,696 - -0.7 394,698 - +0.6 394,698 - +0.0 394,698 - -0.8 394,786 - MPMX19_06211 0.46 +0.1 394,786 - MPMX19_06211 0.46 -0.9 394,786 - MPMX19_06211 0.46 -0.7 394,799 - MPMX19_06211 0.63 -2.3 394,799 - MPMX19_06211 0.63 -2.6 394,799 - MPMX19_06211 0.63 -0.1 394,799 - MPMX19_06211 0.63 -0.3 394,989 + -0.7 394,989 + -0.2 394,989 + -2.2 394,990 - -0.5 394,990 - -0.8 394,993 + +1.2 394,993 + -1.8 394,993 + +0.0 395,550 + MPMX19_06213 0.32 +0.9 395,550 + MPMX19_06213 0.32 +0.3 395,550 + MPMX19_06213 0.32 +0.6 395,550 + MPMX19_06213 0.32 +1.0 395,550 + MPMX19_06213 0.32 -0.8 395,550 + MPMX19_06213 0.32 +0.4 395,550 + MPMX19_06213 0.32 -0.1 395,550 + MPMX19_06213 0.32 -1.1 395,550 + MPMX19_06213 0.32 +0.6 395,550 + MPMX19_06213 0.32 +1.1 395,550 + MPMX19_06213 0.32 +0.4 395,550 + MPMX19_06213 0.32 +0.3 395,550 + MPMX19_06213 0.32 -1.4 395,550 + MPMX19_06213 0.32 +0.2 395,550 + MPMX19_06213 0.32 -0.2 395,550 + MPMX19_06213 0.32 +0.9 395,550 + MPMX19_06213 0.32 -1.7 395,550 + MPMX19_06213 0.32 +0.6 395,550 + MPMX19_06213 0.32 -0.4 395,550 + MPMX19_06213 0.32 -0.5 395,550 + MPMX19_06213 0.32 -0.1 395,550 + MPMX19_06213 0.32 -0.6 395,550 + MPMX19_06213 0.32 -1.7 395,550 + MPMX19_06213 0.32 -0.4 395,550 + MPMX19_06213 0.32 -0.1 395,550 + MPMX19_06213 0.32 +0.0 395,550 + MPMX19_06213 0.32 +0.5 395,550 + MPMX19_06213 0.32 -2.1 395,550 + MPMX19_06213 0.32 -0.8 395,550 + MPMX19_06213 0.32 -0.9 395,550 + MPMX19_06213 0.32 +0.2 395,550 + MPMX19_06213 0.32 -0.1 395,550 + MPMX19_06213 0.32 -0.8 395,550 + MPMX19_06213 0.32 -2.6 395,550 + MPMX19_06213 0.32 -1.4 395,550 + MPMX19_06213 0.32 +0.1 395,550 + MPMX19_06213 0.32 +0.6 395,550 + MPMX19_06213 0.32 -1.8 395,550 + MPMX19_06213 0.32 +0.3 395,550 + MPMX19_06213 0.32 +1.0 395,550 + MPMX19_06213 0.32 +0.1 395,550 + MPMX19_06213 0.32 +1.2 395,550 + MPMX19_06213 0.32 -1.2 395,550 + MPMX19_06213 0.32 -0.1 395,550 + MPMX19_06213 0.32 -0.7 395,550 + MPMX19_06213 0.32 -0.9 395,550 + MPMX19_06213 0.32 -1.3 395,550 + MPMX19_06213 0.32 -0.7 395,550 + MPMX19_06213 0.32 +0.2 395,550 + MPMX19_06213 0.32 -0.6 395,550 + MPMX19_06213 0.32 +0.3 395,550 + MPMX19_06213 0.32 +0.5 395,550 + MPMX19_06213 0.32 -1.4 395,550 + MPMX19_06213 0.32 +0.0 395,550 + MPMX19_06213 0.32 -0.1 395,551 - MPMX19_06213 0.32 +0.2 395,551 - MPMX19_06213 0.32 -1.2 395,551 - MPMX19_06213 0.32 +0.4 395,551 - MPMX19_06213 0.32 -0.7 395,551 - MPMX19_06213 0.32 -0.9 395,551 - MPMX19_06213 0.32 -0.4 395,551 - MPMX19_06213 0.32 -0.2 395,551 - MPMX19_06213 0.32 -0.1 395,551 - MPMX19_06213 0.32 -0.7 395,551 - MPMX19_06213 0.32 -0.8 395,551 - MPMX19_06213 0.32 -1.0 395,551 - MPMX19_06213 0.32 -1.7 395,551 - MPMX19_06213 0.32 +1.3 395,551 - MPMX19_06213 0.32 +0.7 395,551 - MPMX19_06213 0.32 -1.0 395,551 - MPMX19_06213 0.32 +0.8 395,551 - MPMX19_06213 0.32 -2.3 395,551 - MPMX19_06213 0.32 -1.6 395,551 - MPMX19_06213 0.32 -2.0 395,551 - MPMX19_06213 0.32 -1.2 395,551 - MPMX19_06213 0.32 -0.2 395,551 - MPMX19_06213 0.32 -1.5 395,551 - MPMX19_06213 0.32 -0.7 395,551 - MPMX19_06213 0.32 +0.1 395,551 - MPMX19_06213 0.32 +0.4 395,551 - MPMX19_06213 0.32 +0.9 395,551 - MPMX19_06213 0.32 -0.4 395,551 - MPMX19_06213 0.32 +0.3 395,551 - MPMX19_06213 0.32 -0.8 395,551 - MPMX19_06213 0.32 -0.4 395,551 - MPMX19_06213 0.32 -0.2 395,551 - MPMX19_06213 0.32 -0.2 395,551 - MPMX19_06213 0.32 -0.1 395,551 - MPMX19_06213 0.32 +0.3 395,551 - MPMX19_06213 0.32 -0.6 395,551 - MPMX19_06213 0.32 -1.8 395,551 - MPMX19_06213 0.32 -0.4 395,551 - MPMX19_06213 0.32 +0.0 395,551 - MPMX19_06213 0.32 -0.4 395,551 - MPMX19_06213 0.32 -0.3 395,551 - MPMX19_06213 0.32 +0.8 395,551 - MPMX19_06213 0.32 -0.5 395,551 - MPMX19_06213 0.32 +0.4 395,551 - MPMX19_06213 0.32 +1.2 395,551 - MPMX19_06213 0.32 -0.3 395,551 - MPMX19_06213 0.32 +0.1 395,551 - MPMX19_06213 0.32 -0.2 395,551 - MPMX19_06213 0.32 -0.2 395,551 - MPMX19_06213 0.32 -0.5 395,551 - MPMX19_06213 0.32 -0.5 395,551 - MPMX19_06213 0.32 +0.0 395,551 - MPMX19_06213 0.32 -0.5 395,551 - MPMX19_06213 0.32 -0.4 395,551 - MPMX19_06213 0.32 -0.7 395,551 - MPMX19_06213 0.32 -0.2 395,551 - MPMX19_06213 0.32 +0.4 395,551 - MPMX19_06213 0.32 -2.0 395,551 - MPMX19_06213 0.32 -0.2 395,551 - MPMX19_06213 0.32 -0.6 395,551 - MPMX19_06213 0.32 -0.1 395,551 - MPMX19_06213 0.32 +0.5 395,551 - MPMX19_06213 0.32 -1.2 395,551 - MPMX19_06213 0.32 -0.0 395,551 - MPMX19_06213 0.32 +0.0 395,551 - MPMX19_06213 0.32 -0.1 395,551 - MPMX19_06213 0.32 -1.0 395,769 + MPMX19_06213 0.45 -0.5 395,769 + MPMX19_06213 0.45 -0.7 395,769 + MPMX19_06213 0.45 +0.4 395,769 + MPMX19_06213 0.45 -1.4 395,770 - MPMX19_06213 0.45 -0.3 395,770 - MPMX19_06213 0.45 -0.6 395,784 + MPMX19_06213 0.46 +0.1 395,784 + MPMX19_06213 0.46 -1.8 395,784 + MPMX19_06213 0.46 -0.4 395,784 + MPMX19_06213 0.46 +1.0 395,784 + MPMX19_06213 0.46 +0.6 395,785 - MPMX19_06213 0.46 -1.4 395,785 - MPMX19_06213 0.46 +0.5 395,785 - MPMX19_06213 0.46 -0.5 395,820 + MPMX19_06213 0.49 -0.8 395,820 + MPMX19_06213 0.49 -0.7 395,820 + MPMX19_06213 0.49 -1.2 395,820 + MPMX19_06213 0.49 -0.7 395,820 + MPMX19_06213 0.49 -1.0 395,820 + MPMX19_06213 0.49 +0.5 395,820 + MPMX19_06213 0.49 +0.3 395,820 + MPMX19_06213 0.49 -0.8 395,821 - MPMX19_06213 0.49 +0.6 395,821 - MPMX19_06213 0.49 -1.3 395,821 - MPMX19_06213 0.49 -1.3
Or see this region's nucleotide sequence