Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06196 and MPMX19_06197 overlap by 4 nucleotides MPMX19_06197 and MPMX19_06198 are separated by 72 nucleotides MPMX19_06198 and MPMX19_06199 are separated by 57 nucleotides
MPMX19_06196: MPMX19_06196 - Flagellum-specific ATP synthase, at 383,567 to 384,934
_06196
MPMX19_06197: MPMX19_06197 - hypothetical protein, at 384,931 to 385,536
_06197
MPMX19_06198: MPMX19_06198 - hypothetical protein, at 385,609 to 385,992
_06198
MPMX19_06199: MPMX19_06199 - GTPase HflX, at 386,050 to 387,396
_06199
Position (kb) 385
386 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 384.743 kb on + strand, within MPMX19_06196 at 384.743 kb on + strand, within MPMX19_06196 at 384.743 kb on + strand, within MPMX19_06196 at 384.743 kb on + strand, within MPMX19_06196 at 384.743 kb on + strand, within MPMX19_06196 at 384.743 kb on + strand, within MPMX19_06196 at 384.743 kb on + strand, within MPMX19_06196 at 384.743 kb on + strand, within MPMX19_06196 at 384.744 kb on - strand, within MPMX19_06196 at 384.744 kb on - strand, within MPMX19_06196 at 384.744 kb on - strand, within MPMX19_06196 at 384.744 kb on - strand, within MPMX19_06196 at 384.744 kb on - strand, within MPMX19_06196 at 384.744 kb on - strand, within MPMX19_06196 at 384.744 kb on - strand, within MPMX19_06196 at 384.744 kb on - strand, within MPMX19_06196 at 384.744 kb on - strand, within MPMX19_06196 at 384.779 kb on + strand, within MPMX19_06196 at 384.779 kb on + strand, within MPMX19_06196 at 384.780 kb on - strand, within MPMX19_06196 at 384.780 kb on - strand, within MPMX19_06196 at 384.780 kb on - strand, within MPMX19_06196 at 384.942 kb on + strand at 384.943 kb on - strand at 384.943 kb on - strand at 385.100 kb on - strand, within MPMX19_06197 at 385.100 kb on - strand, within MPMX19_06197 at 385.477 kb on + strand at 385.477 kb on + strand at 385.477 kb on + strand at 385.477 kb on + strand at 385.477 kb on + strand at 385.477 kb on + strand at 385.477 kb on + strand at 385.477 kb on + strand at 385.478 kb on - strand at 385.478 kb on - strand at 385.478 kb on - strand at 385.478 kb on - strand at 385.478 kb on - strand at 385.478 kb on - strand at 385.750 kb on + strand, within MPMX19_06198 at 385.750 kb on + strand, within MPMX19_06198 at 385.750 kb on + strand, within MPMX19_06198 at 385.750 kb on + strand, within MPMX19_06198 at 385.750 kb on + strand, within MPMX19_06198 at 385.750 kb on + strand, within MPMX19_06198 at 385.750 kb on + strand, within MPMX19_06198 at 385.750 kb on + strand, within MPMX19_06198 at 385.750 kb on + strand, within MPMX19_06198 at 385.750 kb on + strand, within MPMX19_06198 at 385.751 kb on - strand, within MPMX19_06198 at 385.751 kb on - strand, within MPMX19_06198 at 385.751 kb on - strand, within MPMX19_06198 at 385.751 kb on - strand, within MPMX19_06198 at 385.751 kb on - strand, within MPMX19_06198 at 385.966 kb on + strand at 385.966 kb on + strand at 385.966 kb on + strand at 385.966 kb on + strand at 385.966 kb on + strand at 385.966 kb on + strand at 385.966 kb on + strand at 385.966 kb on + strand at 385.966 kb on + strand at 385.967 kb on - strand at 385.967 kb on - strand at 385.967 kb on - strand at 385.967 kb on - strand at 385.967 kb on - strand at 385.967 kb on - strand at 385.967 kb on - strand at 385.967 kb on - strand at 385.967 kb on - strand at 385.967 kb on - strand at 385.990 kb on + strand at 385.990 kb on + strand at 385.990 kb on + strand at 385.991 kb on - strand at 386.171 kb on + strand at 386.171 kb on + strand at 386.171 kb on + strand at 386.172 kb on - strand at 386.172 kb on - strand at 386.172 kb on - strand at 386.721 kb on - strand, within MPMX19_06199 at 386.945 kb on + strand, within MPMX19_06199 at 386.945 kb on + strand, within MPMX19_06199 at 386.945 kb on + strand, within MPMX19_06199 at 386.946 kb on - strand, within MPMX19_06199
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 384,743 + MPMX19_06196 0.86 -0.5 384,743 + MPMX19_06196 0.86 -0.2 384,743 + MPMX19_06196 0.86 -0.7 384,743 + MPMX19_06196 0.86 -3.1 384,743 + MPMX19_06196 0.86 -0.9 384,743 + MPMX19_06196 0.86 +0.0 384,743 + MPMX19_06196 0.86 +0.5 384,743 + MPMX19_06196 0.86 +0.9 384,744 - MPMX19_06196 0.86 +0.7 384,744 - MPMX19_06196 0.86 -0.2 384,744 - MPMX19_06196 0.86 +0.8 384,744 - MPMX19_06196 0.86 +0.0 384,744 - MPMX19_06196 0.86 +0.0 384,744 - MPMX19_06196 0.86 -0.8 384,744 - MPMX19_06196 0.86 +0.3 384,744 - MPMX19_06196 0.86 +0.6 384,744 - MPMX19_06196 0.86 +0.6 384,779 + MPMX19_06196 0.89 -0.8 384,779 + MPMX19_06196 0.89 -1.0 384,780 - MPMX19_06196 0.89 +1.3 384,780 - MPMX19_06196 0.89 +1.3 384,780 - MPMX19_06196 0.89 +0.2 384,942 + -0.0 384,943 - +0.3 384,943 - +0.4 385,100 - MPMX19_06197 0.28 +0.3 385,100 - MPMX19_06197 0.28 -1.1 385,477 + +1.2 385,477 + -0.2 385,477 + -1.6 385,477 + -0.3 385,477 + -0.2 385,477 + -1.5 385,477 + +0.5 385,477 + -0.6 385,478 - +1.0 385,478 - -0.0 385,478 - -0.4 385,478 - -0.9 385,478 - -0.6 385,478 - +1.4 385,750 + MPMX19_06198 0.37 -0.3 385,750 + MPMX19_06198 0.37 +2.1 385,750 + MPMX19_06198 0.37 -1.5 385,750 + MPMX19_06198 0.37 -1.5 385,750 + MPMX19_06198 0.37 -0.8 385,750 + MPMX19_06198 0.37 +0.5 385,750 + MPMX19_06198 0.37 -0.2 385,750 + MPMX19_06198 0.37 -0.5 385,750 + MPMX19_06198 0.37 +0.5 385,750 + MPMX19_06198 0.37 -1.4 385,751 - MPMX19_06198 0.37 +0.9 385,751 - MPMX19_06198 0.37 +0.6 385,751 - MPMX19_06198 0.37 +0.2 385,751 - MPMX19_06198 0.37 +0.4 385,751 - MPMX19_06198 0.37 -0.7 385,966 + -0.6 385,966 + -0.4 385,966 + +0.2 385,966 + -1.0 385,966 + -0.7 385,966 + -1.1 385,966 + -1.7 385,966 + -0.4 385,966 + -1.1 385,967 - +0.5 385,967 - +1.2 385,967 - -1.2 385,967 - +0.2 385,967 - -0.4 385,967 - +0.1 385,967 - -0.4 385,967 - -0.7 385,967 - -0.6 385,967 - -0.1 385,990 + +0.0 385,990 + -1.4 385,990 + +0.1 385,991 - +0.2 386,171 + -1.4 386,171 + -1.0 386,171 + +0.2 386,172 - -0.1 386,172 - +0.2 386,172 - -0.5 386,721 - MPMX19_06199 0.50 -1.5 386,945 + MPMX19_06199 0.66 +0.6 386,945 + MPMX19_06199 0.66 +0.2 386,945 + MPMX19_06199 0.66 +0.2 386,946 - MPMX19_06199 0.67 +0.8
Or see this region's nucleotide sequence