Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06187

Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06186 and MPMX19_06187 are separated by 3 nucleotidesMPMX19_06187 and MPMX19_06188 are separated by 2 nucleotides MPMX19_06186: MPMX19_06186 - Flagellar biosynthetic protein FlhB, at 376,120 to 377,202 _06186 MPMX19_06187: MPMX19_06187 - hypothetical protein, at 377,206 to 377,976 _06187 MPMX19_06188: MPMX19_06188 - Flagellar biosynthesis protein FlhA, at 377,979 to 380,072 _06188 Position (kb) 377 378Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 376.361 kb on + strand, within MPMX19_06186at 376.361 kb on + strand, within MPMX19_06186at 376.361 kb on + strand, within MPMX19_06186at 376.361 kb on + strand, within MPMX19_06186at 376.362 kb on - strand, within MPMX19_06186at 376.362 kb on - strand, within MPMX19_06186at 376.362 kb on - strand, within MPMX19_06186at 376.362 kb on - strand, within MPMX19_06186at 376.362 kb on - strand, within MPMX19_06186at 376.677 kb on + strand, within MPMX19_06186at 376.677 kb on + strand, within MPMX19_06186at 376.677 kb on + strand, within MPMX19_06186at 376.677 kb on + strand, within MPMX19_06186at 376.678 kb on - strand, within MPMX19_06186at 376.678 kb on - strand, within MPMX19_06186at 376.678 kb on - strand, within MPMX19_06186at 376.697 kb on + strand, within MPMX19_06186at 376.697 kb on + strand, within MPMX19_06186at 376.697 kb on + strand, within MPMX19_06186at 376.697 kb on + strand, within MPMX19_06186at 376.697 kb on + strand, within MPMX19_06186at 376.697 kb on + strand, within MPMX19_06186at 376.697 kb on + strand, within MPMX19_06186at 376.697 kb on + strand, within MPMX19_06186at 376.697 kb on + strand, within MPMX19_06186at 376.697 kb on + strand, within MPMX19_06186at 376.697 kb on + strand, within MPMX19_06186at 376.697 kb on + strand, within MPMX19_06186at 376.697 kb on + strand, within MPMX19_06186at 376.698 kb on - strand, within MPMX19_06186at 376.698 kb on - strand, within MPMX19_06186at 376.698 kb on - strand, within MPMX19_06186at 376.698 kb on - strand, within MPMX19_06186at 376.698 kb on - strand, within MPMX19_06186at 376.698 kb on - strand, within MPMX19_06186at 376.698 kb on - strand, within MPMX19_06186at 376.698 kb on - strand, within MPMX19_06186at 376.698 kb on - strand, within MPMX19_06186at 376.698 kb on - strand, within MPMX19_06186at 376.698 kb on - strand, within MPMX19_06186at 376.698 kb on - strand, within MPMX19_06186at 376.698 kb on - strand, within MPMX19_06186at 376.698 kb on - strand, within MPMX19_06186at 376.698 kb on - strand, within MPMX19_06186at 377.321 kb on + strand, within MPMX19_06187at 377.321 kb on + strand, within MPMX19_06187at 377.322 kb on - strand, within MPMX19_06187at 377.322 kb on - strand, within MPMX19_06187at 377.384 kb on + strand, within MPMX19_06187at 377.384 kb on + strand, within MPMX19_06187at 377.384 kb on + strand, within MPMX19_06187at 377.384 kb on + strand, within MPMX19_06187at 377.385 kb on - strand, within MPMX19_06187at 377.501 kb on + strand, within MPMX19_06187at 377.501 kb on + strand, within MPMX19_06187at 377.501 kb on + strand, within MPMX19_06187at 377.501 kb on + strand, within MPMX19_06187at 377.501 kb on + strand, within MPMX19_06187at 377.502 kb on - strand, within MPMX19_06187at 377.531 kb on + strand, within MPMX19_06187at 377.531 kb on + strand, within MPMX19_06187at 377.531 kb on + strand, within MPMX19_06187at 377.532 kb on - strand, within MPMX19_06187at 377.532 kb on - strand, within MPMX19_06187at 377.532 kb on - strand, within MPMX19_06187at 377.532 kb on - strand, within MPMX19_06187at 377.532 kb on - strand, within MPMX19_06187at 377.714 kb on + strand, within MPMX19_06187at 377.715 kb on - strand, within MPMX19_06187at 377.715 kb on - strand, within MPMX19_06187at 377.927 kb on + strandat 377.927 kb on + strandat 377.927 kb on + strandat 377.927 kb on + strandat 377.927 kb on + strandat 377.927 kb on + strandat 378.505 kb on + strand, within MPMX19_06188at 378.506 kb on - strand, within MPMX19_06188at 378.628 kb on + strand, within MPMX19_06188at 378.628 kb on + strand, within MPMX19_06188at 378.628 kb on + strand, within MPMX19_06188at 378.628 kb on + strand, within MPMX19_06188at 378.629 kb on - strand, within MPMX19_06188at 378.629 kb on - strand, within MPMX19_06188at 378.629 kb on - strand, within MPMX19_06188at 378.629 kb on - strand, within MPMX19_06188at 378.629 kb on - strand, within MPMX19_06188at 378.814 kb on + strand, within MPMX19_06188at 378.814 kb on + strand, within MPMX19_06188at 378.814 kb on + strand, within MPMX19_06188at 378.814 kb on + strand, within MPMX19_06188at 378.814 kb on + strand, within MPMX19_06188at 378.814 kb on + strand, within MPMX19_06188at 378.814 kb on + strand, within MPMX19_06188at 378.814 kb on + strand, within MPMX19_06188at 378.814 kb on + strand, within MPMX19_06188at 378.814 kb on + strand, within MPMX19_06188at 378.814 kb on + strand, within MPMX19_06188at 378.814 kb on + strand, within MPMX19_06188at 378.814 kb on + strand, within MPMX19_06188at 378.814 kb on + strand, within MPMX19_06188at 378.814 kb on + strand, within MPMX19_06188at 378.814 kb on + strand, within MPMX19_06188at 378.814 kb on + strand, within MPMX19_06188at 378.814 kb on + strand, within MPMX19_06188at 378.814 kb on + strand, within MPMX19_06188at 378.814 kb on + strand, within MPMX19_06188at 378.815 kb on - strand, within MPMX19_06188at 378.815 kb on - strand, within MPMX19_06188at 378.815 kb on - strand, within MPMX19_06188at 378.815 kb on - strand, within MPMX19_06188at 378.815 kb on - strand, within MPMX19_06188at 378.815 kb on - strand, within MPMX19_06188at 378.815 kb on - strand, within MPMX19_06188at 378.815 kb on - strand, within MPMX19_06188at 378.815 kb on - strand, within MPMX19_06188at 378.815 kb on - strand, within MPMX19_06188at 378.815 kb on - strand, within MPMX19_06188at 378.815 kb on - strand, within MPMX19_06188at 378.815 kb on - strand, within MPMX19_06188

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
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376,361 + MPMX19_06186 0.22 +1.3
376,361 + MPMX19_06186 0.22 -1.3
376,361 + MPMX19_06186 0.22 -1.0
376,361 + MPMX19_06186 0.22 -1.4
376,362 - MPMX19_06186 0.22 -0.2
376,362 - MPMX19_06186 0.22 -0.9
376,362 - MPMX19_06186 0.22 -0.7
376,362 - MPMX19_06186 0.22 -1.5
376,362 - MPMX19_06186 0.22 -0.4
376,677 + MPMX19_06186 0.51 +0.0
376,677 + MPMX19_06186 0.51 +1.6
376,677 + MPMX19_06186 0.51 -2.1
376,677 + MPMX19_06186 0.51 +0.0
376,678 - MPMX19_06186 0.52 +1.0
376,678 - MPMX19_06186 0.52 +0.2
376,678 - MPMX19_06186 0.52 -0.3
376,697 + MPMX19_06186 0.53 -0.7
376,697 + MPMX19_06186 0.53 +0.3
376,697 + MPMX19_06186 0.53 -0.7
376,697 + MPMX19_06186 0.53 -0.6
376,697 + MPMX19_06186 0.53 +0.9
376,697 + MPMX19_06186 0.53 -0.9
376,697 + MPMX19_06186 0.53 -0.9
376,697 + MPMX19_06186 0.53 +0.5
376,697 + MPMX19_06186 0.53 -0.3
376,697 + MPMX19_06186 0.53 -1.7
376,697 + MPMX19_06186 0.53 -0.8
376,697 + MPMX19_06186 0.53 -2.9
376,697 + MPMX19_06186 0.53 -1.7
376,698 - MPMX19_06186 0.53 -0.2
376,698 - MPMX19_06186 0.53 -0.5
376,698 - MPMX19_06186 0.53 -0.4
376,698 - MPMX19_06186 0.53 -1.0
376,698 - MPMX19_06186 0.53 -1.0
376,698 - MPMX19_06186 0.53 +0.0
376,698 - MPMX19_06186 0.53 -1.0
376,698 - MPMX19_06186 0.53 -0.8
376,698 - MPMX19_06186 0.53 -0.5
376,698 - MPMX19_06186 0.53 +0.6
376,698 - MPMX19_06186 0.53 -2.2
376,698 - MPMX19_06186 0.53 -1.4
376,698 - MPMX19_06186 0.53 -0.9
376,698 - MPMX19_06186 0.53 +0.2
376,698 - MPMX19_06186 0.53 -2.1
377,321 + MPMX19_06187 0.15 -1.2
377,321 + MPMX19_06187 0.15 -1.1
377,322 - MPMX19_06187 0.15 -1.4
377,322 - MPMX19_06187 0.15 -0.4
377,384 + MPMX19_06187 0.23 -1.1
377,384 + MPMX19_06187 0.23 +0.5
377,384 + MPMX19_06187 0.23 +0.9
377,384 + MPMX19_06187 0.23 -0.7
377,385 - MPMX19_06187 0.23 +0.4
377,501 + MPMX19_06187 0.38 -1.5
377,501 + MPMX19_06187 0.38 -1.0
377,501 + MPMX19_06187 0.38 +0.0
377,501 + MPMX19_06187 0.38 -0.8
377,501 + MPMX19_06187 0.38 -1.4
377,502 - MPMX19_06187 0.38 +0.6
377,531 + MPMX19_06187 0.42 -0.5
377,531 + MPMX19_06187 0.42 +0.0
377,531 + MPMX19_06187 0.42 +0.2
377,532 - MPMX19_06187 0.42 +1.4
377,532 - MPMX19_06187 0.42 -1.0
377,532 - MPMX19_06187 0.42 +0.2
377,532 - MPMX19_06187 0.42 -1.2
377,532 - MPMX19_06187 0.42 +0.2
377,714 + MPMX19_06187 0.66 +0.7
377,715 - MPMX19_06187 0.66 -0.7
377,715 - MPMX19_06187 0.66 -0.5
377,927 + -1.8
377,927 + +0.6
377,927 + +0.3
377,927 + +0.3
377,927 + +0.6
377,927 + -0.2
378,505 + MPMX19_06188 0.25 +0.3
378,506 - MPMX19_06188 0.25 +2.0
378,628 + MPMX19_06188 0.31 -0.4
378,628 + MPMX19_06188 0.31 +0.5
378,628 + MPMX19_06188 0.31 -0.8
378,628 + MPMX19_06188 0.31 -1.5
378,629 - MPMX19_06188 0.31 +0.4
378,629 - MPMX19_06188 0.31 -0.8
378,629 - MPMX19_06188 0.31 -2.0
378,629 - MPMX19_06188 0.31 -0.4
378,629 - MPMX19_06188 0.31 -1.5
378,814 + MPMX19_06188 0.40 -1.0
378,814 + MPMX19_06188 0.40 -1.3
378,814 + MPMX19_06188 0.40 -0.1
378,814 + MPMX19_06188 0.40 -0.7
378,814 + MPMX19_06188 0.40 +0.6
378,814 + MPMX19_06188 0.40 -1.0
378,814 + MPMX19_06188 0.40 +0.9
378,814 + MPMX19_06188 0.40 -0.2
378,814 + MPMX19_06188 0.40 +0.5
378,814 + MPMX19_06188 0.40 -0.2
378,814 + MPMX19_06188 0.40 +1.6
378,814 + MPMX19_06188 0.40 -1.8
378,814 + MPMX19_06188 0.40 -0.1
378,814 + MPMX19_06188 0.40 -0.2
378,814 + MPMX19_06188 0.40 -0.5
378,814 + MPMX19_06188 0.40 +0.0
378,814 + MPMX19_06188 0.40 +0.2
378,814 + MPMX19_06188 0.40 -0.5
378,814 + MPMX19_06188 0.40 -1.7
378,814 + MPMX19_06188 0.40 -0.6
378,815 - MPMX19_06188 0.40 -2.2
378,815 - MPMX19_06188 0.40 -1.0
378,815 - MPMX19_06188 0.40 -0.9
378,815 - MPMX19_06188 0.40 -0.3
378,815 - MPMX19_06188 0.40 +0.0
378,815 - MPMX19_06188 0.40 -0.3
378,815 - MPMX19_06188 0.40 +0.2
378,815 - MPMX19_06188 0.40 +0.5
378,815 - MPMX19_06188 0.40 -0.8
378,815 - MPMX19_06188 0.40 -2.0
378,815 - MPMX19_06188 0.40 -0.7
378,815 - MPMX19_06188 0.40 -1.4
378,815 - MPMX19_06188 0.40 -0.6

Or see this region's nucleotide sequence