Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06022 and MPMX19_06023 are separated by 109 nucleotides MPMX19_06023 and MPMX19_06024 are separated by 5 nucleotides MPMX19_06024 and MPMX19_06025 are separated by 28 nucleotides
MPMX19_06022: MPMX19_06022 - Bicyclomycin resistance protein, at 175,082 to 176,308
_06022
MPMX19_06023: MPMX19_06023 - Putative aliphatic sulfonates-binding protein, at 176,418 to 177,500
_06023
MPMX19_06024: MPMX19_06024 - hypothetical protein, at 177,506 to 177,823
_06024
MPMX19_06025: MPMX19_06025 - 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, at 177,852 to 178,892
_06025
Position (kb) 176
177
178 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 175.745 kb on + strand, within MPMX19_06022 at 175.746 kb on - strand, within MPMX19_06022 at 175.746 kb on - strand, within MPMX19_06022 at 175.754 kb on + strand, within MPMX19_06022 at 175.754 kb on + strand, within MPMX19_06022 at 175.754 kb on + strand, within MPMX19_06022 at 175.754 kb on + strand, within MPMX19_06022 at 175.755 kb on - strand, within MPMX19_06022 at 175.755 kb on - strand, within MPMX19_06022 at 175.755 kb on - strand, within MPMX19_06022 at 175.755 kb on - strand, within MPMX19_06022 at 175.778 kb on + strand, within MPMX19_06022 at 175.778 kb on + strand, within MPMX19_06022 at 175.778 kb on + strand, within MPMX19_06022 at 175.778 kb on + strand, within MPMX19_06022 at 175.778 kb on + strand, within MPMX19_06022 at 175.778 kb on + strand, within MPMX19_06022 at 175.779 kb on - strand, within MPMX19_06022 at 175.779 kb on - strand, within MPMX19_06022 at 175.779 kb on - strand, within MPMX19_06022 at 175.779 kb on - strand, within MPMX19_06022 at 175.779 kb on - strand, within MPMX19_06022 at 175.779 kb on - strand, within MPMX19_06022 at 175.779 kb on - strand, within MPMX19_06022 at 175.779 kb on - strand, within MPMX19_06022 at 175.779 kb on - strand, within MPMX19_06022 at 175.779 kb on - strand, within MPMX19_06022 at 175.779 kb on - strand, within MPMX19_06022 at 175.779 kb on - strand, within MPMX19_06022 at 175.779 kb on - strand, within MPMX19_06022 at 175.820 kb on + strand, within MPMX19_06022 at 175.820 kb on + strand, within MPMX19_06022 at 175.820 kb on + strand, within MPMX19_06022 at 175.820 kb on + strand, within MPMX19_06022 at 175.820 kb on + strand, within MPMX19_06022 at 175.821 kb on - strand, within MPMX19_06022 at 175.821 kb on - strand, within MPMX19_06022 at 175.853 kb on + strand, within MPMX19_06022 at 175.853 kb on + strand, within MPMX19_06022 at 175.853 kb on + strand, within MPMX19_06022 at 175.853 kb on + strand, within MPMX19_06022 at 175.853 kb on + strand, within MPMX19_06022 at 175.853 kb on + strand, within MPMX19_06022 at 175.854 kb on - strand, within MPMX19_06022 at 175.854 kb on - strand, within MPMX19_06022 at 175.854 kb on - strand, within MPMX19_06022 at 175.854 kb on - strand, within MPMX19_06022 at 175.854 kb on - strand, within MPMX19_06022 at 176.323 kb on + strand at 176.323 kb on + strand at 176.323 kb on + strand at 176.323 kb on + strand at 176.324 kb on - strand at 176.391 kb on - strand at 176.391 kb on - strand at 176.391 kb on - strand at 176.391 kb on - strand at 176.580 kb on + strand, within MPMX19_06023 at 176.580 kb on + strand, within MPMX19_06023 at 176.580 kb on + strand, within MPMX19_06023 at 176.580 kb on + strand, within MPMX19_06023 at 176.580 kb on + strand, within MPMX19_06023 at 176.580 kb on + strand, within MPMX19_06023 at 176.580 kb on + strand, within MPMX19_06023 at 176.581 kb on - strand, within MPMX19_06023 at 176.581 kb on - strand, within MPMX19_06023 at 176.581 kb on - strand, within MPMX19_06023 at 176.581 kb on - strand, within MPMX19_06023 at 176.581 kb on - strand, within MPMX19_06023 at 176.581 kb on - strand, within MPMX19_06023 at 176.581 kb on - strand, within MPMX19_06023 at 176.581 kb on - strand, within MPMX19_06023 at 176.581 kb on - strand, within MPMX19_06023 at 176.581 kb on - strand, within MPMX19_06023 at 176.582 kb on + strand, within MPMX19_06023 at 176.582 kb on + strand, within MPMX19_06023 at 176.583 kb on - strand, within MPMX19_06023 at 176.583 kb on - strand, within MPMX19_06023 at 176.583 kb on - strand, within MPMX19_06023 at 176.610 kb on + strand, within MPMX19_06023 at 176.610 kb on + strand, within MPMX19_06023 at 176.610 kb on + strand, within MPMX19_06023 at 176.610 kb on + strand, within MPMX19_06023 at 176.610 kb on + strand, within MPMX19_06023 at 176.610 kb on + strand, within MPMX19_06023 at 176.610 kb on + strand, within MPMX19_06023 at 176.610 kb on + strand, within MPMX19_06023 at 176.610 kb on + strand, within MPMX19_06023 at 176.610 kb on + strand, within MPMX19_06023 at 176.610 kb on + strand, within MPMX19_06023 at 176.610 kb on + strand, within MPMX19_06023 at 176.610 kb on + strand, within MPMX19_06023 at 176.610 kb on + strand, within MPMX19_06023 at 176.610 kb on + strand, within MPMX19_06023 at 176.611 kb on - strand, within MPMX19_06023 at 176.611 kb on - strand, within MPMX19_06023 at 176.611 kb on - strand, within MPMX19_06023 at 176.611 kb on - strand, within MPMX19_06023 at 176.611 kb on - strand, within MPMX19_06023 at 176.611 kb on - strand, within MPMX19_06023 at 176.611 kb on - strand, within MPMX19_06023 at 176.611 kb on - strand, within MPMX19_06023 at 176.611 kb on - strand, within MPMX19_06023 at 176.611 kb on - strand, within MPMX19_06023 at 176.611 kb on - strand, within MPMX19_06023 at 176.611 kb on - strand, within MPMX19_06023 at 176.611 kb on - strand, within MPMX19_06023 at 176.611 kb on - strand, within MPMX19_06023 at 176.727 kb on + strand, within MPMX19_06023 at 176.727 kb on + strand, within MPMX19_06023 at 176.727 kb on + strand, within MPMX19_06023 at 176.727 kb on + strand, within MPMX19_06023 at 176.727 kb on + strand, within MPMX19_06023 at 176.727 kb on + strand, within MPMX19_06023 at 176.727 kb on + strand, within MPMX19_06023 at 176.727 kb on + strand, within MPMX19_06023 at 176.727 kb on + strand, within MPMX19_06023 at 176.727 kb on + strand, within MPMX19_06023 at 176.727 kb on + strand, within MPMX19_06023 at 176.727 kb on + strand, within MPMX19_06023 at 176.728 kb on - strand, within MPMX19_06023 at 176.728 kb on - strand, within MPMX19_06023 at 176.728 kb on - strand, within MPMX19_06023 at 176.728 kb on - strand, within MPMX19_06023 at 176.728 kb on - strand, within MPMX19_06023 at 176.728 kb on - strand, within MPMX19_06023 at 176.728 kb on - strand, within MPMX19_06023 at 176.728 kb on - strand, within MPMX19_06023 at 176.728 kb on - strand, within MPMX19_06023 at 176.728 kb on - strand, within MPMX19_06023 at 176.728 kb on - strand, within MPMX19_06023 at 177.272 kb on + strand, within MPMX19_06023 at 177.272 kb on + strand, within MPMX19_06023 at 177.809 kb on + strand at 177.809 kb on + strand at 177.809 kb on + strand at 177.809 kb on + strand at 177.809 kb on + strand at 177.810 kb on - strand at 177.810 kb on - strand at 177.810 kb on - strand at 177.810 kb on - strand at 177.810 kb on - strand at 177.810 kb on - strand at 177.810 kb on - strand at 177.810 kb on - strand at 177.810 kb on - strand at 177.821 kb on + strand at 177.821 kb on + strand at 177.821 kb on - strand at 177.822 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 175,745 + MPMX19_06022 0.54 -0.5 175,746 - MPMX19_06022 0.54 +1.2 175,746 - MPMX19_06022 0.54 -1.5 175,754 + MPMX19_06022 0.55 -1.3 175,754 + MPMX19_06022 0.55 +1.2 175,754 + MPMX19_06022 0.55 +0.0 175,754 + MPMX19_06022 0.55 +0.2 175,755 - MPMX19_06022 0.55 -1.2 175,755 - MPMX19_06022 0.55 -0.7 175,755 - MPMX19_06022 0.55 -0.6 175,755 - MPMX19_06022 0.55 -0.2 175,778 + MPMX19_06022 0.57 +0.9 175,778 + MPMX19_06022 0.57 -1.0 175,778 + MPMX19_06022 0.57 +0.2 175,778 + MPMX19_06022 0.57 +0.0 175,778 + MPMX19_06022 0.57 -1.0 175,778 + MPMX19_06022 0.57 -0.4 175,779 - MPMX19_06022 0.57 +0.3 175,779 - MPMX19_06022 0.57 +0.1 175,779 - MPMX19_06022 0.57 +1.0 175,779 - MPMX19_06022 0.57 +0.3 175,779 - MPMX19_06022 0.57 -0.7 175,779 - MPMX19_06022 0.57 -0.2 175,779 - MPMX19_06022 0.57 -0.2 175,779 - MPMX19_06022 0.57 -1.0 175,779 - MPMX19_06022 0.57 -1.5 175,779 - MPMX19_06022 0.57 -1.0 175,779 - MPMX19_06022 0.57 +0.2 175,779 - MPMX19_06022 0.57 -2.2 175,779 - MPMX19_06022 0.57 -0.1 175,820 + MPMX19_06022 0.60 -0.5 175,820 + MPMX19_06022 0.60 -0.8 175,820 + MPMX19_06022 0.60 -1.0 175,820 + MPMX19_06022 0.60 +0.0 175,820 + MPMX19_06022 0.60 -1.7 175,821 - MPMX19_06022 0.60 -0.3 175,821 - MPMX19_06022 0.60 -1.6 175,853 + MPMX19_06022 0.63 -2.2 175,853 + MPMX19_06022 0.63 -0.5 175,853 + MPMX19_06022 0.63 -1.4 175,853 + MPMX19_06022 0.63 -1.0 175,853 + MPMX19_06022 0.63 +0.5 175,853 + MPMX19_06022 0.63 -0.1 175,854 - MPMX19_06022 0.63 -1.7 175,854 - MPMX19_06022 0.63 -1.8 175,854 - MPMX19_06022 0.63 +0.0 175,854 - MPMX19_06022 0.63 +2.1 175,854 - MPMX19_06022 0.63 +1.2 176,323 + -0.4 176,323 + -1.8 176,323 + +0.1 176,323 + -0.3 176,324 - -0.5 176,391 - -1.8 176,391 - -0.1 176,391 - -0.7 176,391 - +0.6 176,580 + MPMX19_06023 0.15 +0.6 176,580 + MPMX19_06023 0.15 +1.0 176,580 + MPMX19_06023 0.15 -0.6 176,580 + MPMX19_06023 0.15 +1.4 176,580 + MPMX19_06023 0.15 -1.1 176,580 + MPMX19_06023 0.15 -0.3 176,580 + MPMX19_06023 0.15 +0.5 176,581 - MPMX19_06023 0.15 -1.2 176,581 - MPMX19_06023 0.15 -0.3 176,581 - MPMX19_06023 0.15 -1.5 176,581 - MPMX19_06023 0.15 +0.7 176,581 - MPMX19_06023 0.15 +0.5 176,581 - MPMX19_06023 0.15 -1.2 176,581 - MPMX19_06023 0.15 +1.6 176,581 - MPMX19_06023 0.15 -0.8 176,581 - MPMX19_06023 0.15 -0.1 176,581 - MPMX19_06023 0.15 +1.3 176,582 + MPMX19_06023 0.15 -0.7 176,582 + MPMX19_06023 0.15 +0.8 176,583 - MPMX19_06023 0.15 +0.2 176,583 - MPMX19_06023 0.15 -1.7 176,583 - MPMX19_06023 0.15 +0.5 176,610 + MPMX19_06023 0.18 -1.7 176,610 + MPMX19_06023 0.18 +0.0 176,610 + MPMX19_06023 0.18 -1.8 176,610 + MPMX19_06023 0.18 +1.4 176,610 + MPMX19_06023 0.18 +0.0 176,610 + MPMX19_06023 0.18 +0.2 176,610 + MPMX19_06023 0.18 -1.0 176,610 + MPMX19_06023 0.18 -1.7 176,610 + MPMX19_06023 0.18 -1.7 176,610 + MPMX19_06023 0.18 -0.9 176,610 + MPMX19_06023 0.18 -0.7 176,610 + MPMX19_06023 0.18 +1.1 176,610 + MPMX19_06023 0.18 -2.0 176,610 + MPMX19_06023 0.18 +0.8 176,610 + MPMX19_06023 0.18 +0.8 176,611 - MPMX19_06023 0.18 -0.1 176,611 - MPMX19_06023 0.18 -0.2 176,611 - MPMX19_06023 0.18 +3.0 176,611 - MPMX19_06023 0.18 -0.3 176,611 - MPMX19_06023 0.18 -0.1 176,611 - MPMX19_06023 0.18 -0.4 176,611 - MPMX19_06023 0.18 +0.3 176,611 - MPMX19_06023 0.18 +0.0 176,611 - MPMX19_06023 0.18 +0.0 176,611 - MPMX19_06023 0.18 -1.4 176,611 - MPMX19_06023 0.18 -0.3 176,611 - MPMX19_06023 0.18 +0.9 176,611 - MPMX19_06023 0.18 -0.8 176,611 - MPMX19_06023 0.18 +0.5 176,727 + MPMX19_06023 0.29 +0.1 176,727 + MPMX19_06023 0.29 +0.1 176,727 + MPMX19_06023 0.29 -0.3 176,727 + MPMX19_06023 0.29 -0.4 176,727 + MPMX19_06023 0.29 -0.2 176,727 + MPMX19_06023 0.29 -0.4 176,727 + MPMX19_06023 0.29 -1.0 176,727 + MPMX19_06023 0.29 -0.3 176,727 + MPMX19_06023 0.29 -1.4 176,727 + MPMX19_06023 0.29 -0.3 176,727 + MPMX19_06023 0.29 +0.3 176,727 + MPMX19_06023 0.29 +0.8 176,728 - MPMX19_06023 0.29 -0.5 176,728 - MPMX19_06023 0.29 -0.7 176,728 - MPMX19_06023 0.29 -0.3 176,728 - MPMX19_06023 0.29 +1.8 176,728 - MPMX19_06023 0.29 -1.2 176,728 - MPMX19_06023 0.29 +0.2 176,728 - MPMX19_06023 0.29 +0.5 176,728 - MPMX19_06023 0.29 -0.8 176,728 - MPMX19_06023 0.29 -0.7 176,728 - MPMX19_06023 0.29 +0.4 176,728 - MPMX19_06023 0.29 -0.2 177,272 + MPMX19_06023 0.79 -0.6 177,272 + MPMX19_06023 0.79 -0.8 177,809 + -0.5 177,809 + +0.9 177,809 + -2.0 177,809 + +0.3 177,809 + -2.5 177,810 - -0.4 177,810 - -0.3 177,810 - +0.6 177,810 - -1.3 177,810 - -1.2 177,810 - +0.5 177,810 - +0.1 177,810 - -1.4 177,810 - +0.3 177,821 + +0.5 177,821 + -1.0 177,821 - +0.6 177,822 - +0.5
Or see this region's nucleotide sequence