Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05920

Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_05918 and MPMX19_05919 are separated by 4 nucleotidesMPMX19_05919 and MPMX19_05920 are separated by 9 nucleotidesMPMX19_05920 and MPMX19_05921 are separated by 45 nucleotidesMPMX19_05921 and MPMX19_05922 are separated by 28 nucleotides MPMX19_05918: MPMX19_05918 - Flagellar biosynthetic protein FliP, at 53,273 to 54,163 _05918 MPMX19_05919: MPMX19_05919 - hypothetical protein, at 54,168 to 54,464 _05919 MPMX19_05920: MPMX19_05920 - Flagellar motor switch protein FliG, at 54,474 to 55,502 _05920 MPMX19_05921: MPMX19_05921 - hypothetical protein, at 55,548 to 56,270 _05921 MPMX19_05922: MPMX19_05922 - putative oxidoreductase/MSMEI_2347, at 56,299 to 57,135 _05922 Position (kb) 54 55 56Strain fitness (log2 ratio) -2 -1 0 1at 53.876 kb on - strand, within MPMX19_05918at 54.152 kb on + strandat 54.152 kb on + strandat 54.152 kb on + strandat 54.152 kb on + strandat 54.152 kb on + strandat 54.152 kb on + strandat 54.153 kb on - strandat 54.153 kb on - strandat 54.153 kb on - strandat 54.153 kb on - strandat 54.153 kb on - strandat 54.153 kb on - strandat 54.153 kb on - strandat 54.504 kb on + strandat 54.504 kb on + strandat 54.504 kb on + strandat 54.504 kb on + strandat 54.504 kb on + strandat 54.504 kb on + strandat 54.504 kb on + strandat 54.504 kb on + strandat 54.504 kb on + strandat 54.504 kb on + strandat 54.504 kb on + strandat 54.504 kb on + strandat 54.504 kb on + strandat 54.504 kb on + strandat 54.505 kb on - strandat 54.505 kb on - strandat 54.505 kb on - strandat 54.505 kb on - strandat 54.505 kb on - strandat 54.505 kb on - strandat 54.505 kb on - strandat 54.505 kb on - strandat 54.505 kb on - strandat 54.505 kb on - strandat 54.720 kb on + strand, within MPMX19_05920at 54.720 kb on + strand, within MPMX19_05920at 54.721 kb on - strand, within MPMX19_05920at 54.721 kb on - strand, within MPMX19_05920at 54.721 kb on - strand, within MPMX19_05920at 54.721 kb on - strand, within MPMX19_05920at 54.858 kb on + strand, within MPMX19_05920at 54.858 kb on + strand, within MPMX19_05920at 54.858 kb on + strand, within MPMX19_05920at 54.859 kb on - strand, within MPMX19_05920at 54.859 kb on - strand, within MPMX19_05920at 54.859 kb on - strand, within MPMX19_05920at 54.859 kb on - strand, within MPMX19_05920at 54.859 kb on - strand, within MPMX19_05920at 54.859 kb on - strand, within MPMX19_05920at 54.859 kb on - strand, within MPMX19_05920at 54.859 kb on - strand, within MPMX19_05920at 54.859 kb on - strand, within MPMX19_05920at 54.859 kb on - strand, within MPMX19_05920at 54.859 kb on - strand, within MPMX19_05920at 54.873 kb on + strand, within MPMX19_05920at 54.874 kb on - strand, within MPMX19_05920at 54.874 kb on - strand, within MPMX19_05920at 55.056 kb on + strand, within MPMX19_05920at 55.056 kb on + strand, within MPMX19_05920at 55.057 kb on - strand, within MPMX19_05920at 55.057 kb on - strand, within MPMX19_05920at 55.057 kb on - strand, within MPMX19_05920at 55.373 kb on + strand, within MPMX19_05920at 55.373 kb on + strand, within MPMX19_05920at 55.373 kb on + strand, within MPMX19_05920at 55.373 kb on + strand, within MPMX19_05920at 55.373 kb on + strand, within MPMX19_05920at 55.374 kb on - strand, within MPMX19_05920at 55.374 kb on - strand, within MPMX19_05920at 55.374 kb on - strand, within MPMX19_05920at 55.374 kb on - strand, within MPMX19_05920at 55.497 kb on + strandat 55.497 kb on + strandat 55.497 kb on + strandat 55.498 kb on - strandat 55.498 kb on - strandat 55.498 kb on - strandat 56.162 kb on + strand, within MPMX19_05921at 56.162 kb on + strand, within MPMX19_05921at 56.162 kb on + strand, within MPMX19_05921at 56.163 kb on - strand, within MPMX19_05921at 56.163 kb on - strand, within MPMX19_05921

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
remove
53,876 - MPMX19_05918 0.68 +0.2
54,152 + +0.2
54,152 + -2.2
54,152 + -0.7
54,152 + +0.4
54,152 + -0.5
54,152 + -1.9
54,153 - -0.2
54,153 - +0.3
54,153 - +0.2
54,153 - +0.6
54,153 - +1.4
54,153 - +1.0
54,153 - -0.3
54,504 + +0.0
54,504 + -0.4
54,504 + -1.2
54,504 + -0.7
54,504 + -0.1
54,504 + +0.2
54,504 + +0.5
54,504 + -1.0
54,504 + +1.0
54,504 + +0.3
54,504 + -1.5
54,504 + -0.2
54,504 + -1.0
54,504 + +1.0
54,505 - +0.6
54,505 - +0.5
54,505 - -0.5
54,505 - -0.9
54,505 - +0.2
54,505 - +0.3
54,505 - +0.0
54,505 - +0.6
54,505 - -1.5
54,505 - -0.4
54,720 + MPMX19_05920 0.24 -0.5
54,720 + MPMX19_05920 0.24 +0.4
54,721 - MPMX19_05920 0.24 -1.0
54,721 - MPMX19_05920 0.24 -2.4
54,721 - MPMX19_05920 0.24 -0.1
54,721 - MPMX19_05920 0.24 +0.0
54,858 + MPMX19_05920 0.37 -0.2
54,858 + MPMX19_05920 0.37 +0.0
54,858 + MPMX19_05920 0.37 +0.8
54,859 - MPMX19_05920 0.37 +0.9
54,859 - MPMX19_05920 0.37 -0.3
54,859 - MPMX19_05920 0.37 -0.5
54,859 - MPMX19_05920 0.37 -2.1
54,859 - MPMX19_05920 0.37 +0.6
54,859 - MPMX19_05920 0.37 +1.0
54,859 - MPMX19_05920 0.37 -1.4
54,859 - MPMX19_05920 0.37 -0.1
54,859 - MPMX19_05920 0.37 +0.1
54,859 - MPMX19_05920 0.37 -1.1
54,859 - MPMX19_05920 0.37 +0.3
54,873 + MPMX19_05920 0.39 +1.0
54,874 - MPMX19_05920 0.39 +0.3
54,874 - MPMX19_05920 0.39 +0.5
55,056 + MPMX19_05920 0.57 +0.5
55,056 + MPMX19_05920 0.57 +1.1
55,057 - MPMX19_05920 0.57 +0.3
55,057 - MPMX19_05920 0.57 +0.4
55,057 - MPMX19_05920 0.57 -0.1
55,373 + MPMX19_05920 0.87 +0.4
55,373 + MPMX19_05920 0.87 +1.3
55,373 + MPMX19_05920 0.87 +0.6
55,373 + MPMX19_05920 0.87 -1.5
55,373 + MPMX19_05920 0.87 -0.1
55,374 - MPMX19_05920 0.87 +1.6
55,374 - MPMX19_05920 0.87 +0.4
55,374 - MPMX19_05920 0.87 -0.2
55,374 - MPMX19_05920 0.87 -1.0
55,497 + -0.1
55,497 + -0.5
55,497 + -0.6
55,498 - -1.5
55,498 - -1.5
55,498 - +0.5
56,162 + MPMX19_05921 0.85 +0.2
56,162 + MPMX19_05921 0.85 -1.1
56,162 + MPMX19_05921 0.85 +0.6
56,163 - MPMX19_05921 0.85 +1.0
56,163 - MPMX19_05921 0.85 +0.4

Or see this region's nucleotide sequence